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Name ______________________ Date __________ Per. ________ RNA Structure, tRNA, and Protein Building RNA is produced in the nucleus of a cell and moves out of the nucleus to the cell’s ribosomes. This RNA is a specific sequence of bases copied from the DNA, which carries the chromosomal genetic message to the cytoplasm. Thus, it is called messenger RNA (mRNA). At the ribosomes, mRNA directs the building of proteins. Proteins are made up of smaller molecules called amino acids. How does a cell construct the proper amino acids into protein molecules? The mRNA takes the message to the site of protein synthesis or the ribosome that is located in the cytoplasm of the cell. Ribosomes are two part units that are made of protein and a form of RNA called ribosomal RNA (rRNA). The mRNA attaches between the two halves of the ribosome. Formation of proteins involves another kind of RNA, it is called transfer RNA (tRNA). The tRNA brings specific amino acids (the building blocks of proteins) to mRNA according to the code sequence of bases found on mRNA and they are joined by peptide bonds to form proteins. In this investigation you will: use paper models to show how base shapes in mRNA match only with specific base shapes of DNA use paper models to show how base shapes in mRNA match only with specific base shapes of tRNA use paper models to show how tRNA molecules bring specific amino acid molecules to the ribosome where building of proteins occurs. Learn to transcribe a DNA code to a mRNA message and translate the mRNA to the tRNA-amino acid code Study the molecular basis for mutations Part A RNA Structure Besides ensuring the exact replication of chromosomes, the sequence (order) and pairings of bases are genetic code of the instructions for the entire cell. How does a cell read the chemical message coded in its DNA in the form of specific base sequences? Part of the answer lies with a second molecule in the nucleus of cells called ribonucleic acid (RNA). RNA is similar to DNA in that its molecules are also formed from nucleotides. However deoxyribose and thymine are not found in RNA. Two other molecules, ribose and uracil, are present. Ribose replaces deoxyribose, and uracil replaces thymine. 1. Which base is replaced in RNA by uracil? __________________________________ 2. What chemical replaces deoxyribose in RNA? _______________________________ 3. To which base in DNA do the following RNA bases pair? Guanine to __________________ Adenine to __________________ Cytosine to ____________________ Uracil to ____________________ RNA is a single-stranded (or ½ ladder) molecule. Thus, the series of RNA nucleotides formed from DNA represents an RNA molecule. After its formation, this RNA leaves the nucleus of the cell and goes to the ribosomes. It carries the DNA message of base sequences in the exact same order. Therefore, the formation of this series of RNA nucleotides is called TRANSCRIPTION. Part B RNA Transcription Cut out the six RNA nucleotide models. (Cut only along solid lines) Match the six RNA nucleotides to the left side of the glued DNA molecule. Remove the RNA nucleotide series from the DNA pattern. (DNA molecules “unzip” temporarily during RNA production.) Place the mRNA model in the cytoplasm and glue it to your paper 1. Do the mRNA half-rung bases pair exactly as they would if this were DNA replication? ______________________________________________________________ Copy the following table and use check marks to indicate to which molecule each characteristic applies. DNA 2. Deoxyribonucleic acid 3. Ribonucleic acid 4. Ribose present 5. Deoxyribose present 6. Phosphoric acid present 7. Adenine present 8. Thymine present 9. Uracil present 10. Guanine present 11. Cytosine present 12. Formed from nucleotides 13. Double stranded 14. Single stranded 15. Remains in the nucleus 16. Moves out of the nucleus 17. Contains a chemical message or code RNA Part B Structure of tRNA Recall that molecules of mRNA leave the cell nucleus and move out to the cell’s ribosomes. Meanwhile, transfer RNA (tRNA) is present in the cell cytoplasm. Models of mRNA are composed of many base nucleotides. However, tRNA has a three base sequence (triplet) called an anticodon that can match up with the bases of mRNA (the three bases in the mRNA are called codons). Cut out the two models of tRNA. Cut only along solid lines. 4. Name the four nucleotide bases present in tRNA? ____________________________ 5. Do these bases differ from those found in mRNA? ____________________________ 6. How does the tRNA molecule differ from mRNA in shape? ______________________________________________ Join the tRNA molecules to the model of mRNA. 7. a. b. c. What base in mRNA can only join with the adenine base of tRNA? ___________________ uracil base of tRNA? _____________________ guanine base of tRNA ____________________ 8. a. b. c. d. What order of bases on mRNA will match a sequence on tRNA of UUA (uracil, uracil, adenine) ? ________________________________________ UCA (uracil, cytosine, adenine)? ______________________________________ UGA (uracil, guanine, adenine)? ______________________________________ AAA (adenine, adenine, adenine)? _____________________________________ Transfer RNA (tRNA) picks up amino acids in a series of chemical steps. A tRNA molecule only picks up a certain amino acid. The amino acid is attached to the tRNA at the end opposite the three bases that will attach to mRNA. Cut out the two remaining models of amino acids, serine and aspartic acid, from the page provided. Join these models to their proper tRNA models. Only specific amino acid will fit along the top of each tRNA model. Remember that each tRNA model has a three sequence base (triplet) called an anticodon. 9. What amino acid connects to a tRNA molecule with a triplet of (look at model) a. AGC? ___________________________________________ b. CUG ___________________________________________ 10. How many base molecules or nucleotides of mRNA are responsible for the coding of one amino acid? __________________________________________________________ Part C Forming a Protein Molecule During Translation When many amino acid molecules are brought to the mRNA by tRNA, the amino acids join to form a protein molecule. When tRNA molecules with their attached amino acids join to the bases of the mRNA, the formation of a protein molecule is begun. This entire process is called translation. The DNA message has been translated into a protein molecule.Depending on the type and order of amino acids, an almost endless variety of proteins can be produced. Because of the repeated matching of base sequences, the base sequence in the DNA of chromosomes codes for and controls the formation of protein molecules at ribosomes. 11. A ribosome receives the following mRNA message: AAA – CGA – GAA – GUU. What will the sequence of tRNA bases joining to the mRNA molecule be? _____________________________________________________________________ ANALYSIS 1. What is the function of mRNA? _____________________________________________________________________ ___________________________________________________________________ 2. What is the function of tRNA? ________________________________________________________________________ ________________________________________________________________________ 3. How do tRNA and mRNA differ in their location within the cell? ________________________________________________________________________ ________________________________________________________________________ 4. Briefly describe translation. ________________________________________________________________________ ________________________________________________________________________ 5. What is being translated? _________________________________________________ Copy the chart by using check marks to indicate to which molecule each characteristic applies. Similarities and Differences Between mRNA and tRNA MRNA tRNA Deoxyribose present Ribose present Phosphoric acid present Adenine present Thymine present Uracil present Guanine present Cytosine present Contains a chemical message or code Carries an amino acid to a ribosome