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Humans and Microbes • Since Leeuwenhoek’s discovery of microorganisms in 17th century led people to suspect they might cause diseases, most research and funding has gone towards understanding pathogens. • Robert Koch (1876) offered proof of what is now considered germ theory of disease; showed Bacillus anthracis causes anthrax • Today, we now know that most of the bacteria we associate with are not pathogens, and many are critical for our health. Bacteria Are Ubiquitous We contact numerous microorganisms daily • Breathe in, ingest, pick up on skin • Vast majority do not make us sick, or cause infections • Some colonize body surfaces; or slough off with dead epithelial cells • Most that are swallowed die in stomach or are eliminated in feces • Relatively few are pathogens that cause damage Microbes, Health, and Disease Most microbes are harmless • Many are beneficial • Normal microbiota (normal flora) are organisms that routinely reside on body’s surfaces • Relationship is a balance, and some can cause disease under certain conditions-- opportunistic infections • Weaknesses in innate or adaptive defenses can leave individuals vulnerable to invasion – malnutrition, cancer, AIDS or other disease, surgery, wounds, genetic defects, alcohol or drug abuse, and immunosuppressive therapy The Anatomical Barriers as Ecosystems Skin, mucous membranes are barriers • Also host complex ecosystem of microorganisms • Example of symbiosis, or “living together” • Mutualism: both partners benefit – In large intestine, bacteria synthesize vitamin K and B’s, which host can absorb; bacteria are supplied with warmth, energy sources • Commensalism: one partner benefits, other is unharmed – Many microbes living on skin neither harmful nor helpful, but obtain food and necessities from host • Parasitism/pathogenicity: one organism benefits at expense of other – pathogens and parasites Human commensals and mutalistic microbes Resident microbiota inhabit sites for extended periods Transient microbiota inhabit temporarily • Important to human health • Relatively little is known • Human Microbiome Project aimed at studying http://en.wikipedia.org/wiki/Huma n_Microbiome_Project Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Nose Staphylococcus Corynebacterium Mouth Streptococcus Fusobacterium Actinomyces Leptotrichia Veillonella Throat Streptococcus Moraxella Corynebacterium Haemophilus Neisseria Mycoplasma Skin Staphylococcus Propionibacterium Urethra Streptococcus Mycobacterium Escherichia Bacteroides Large intestine Bacteroides Escherichia Proteus Klebsiella Lactobacillus Streptococcus Candida Clostridium Pseudomonas Enterococcus Vagina Lactobacillus The Normal Microbiota The Protective Role of the Normal Microbiota • Significant contribution is protection against pathogens • Covering of binding sites prevents attachment • Consumption of available nutrients • Production of compounds toxic to other bacteria • When killed or suppressed (e.g., during antibiotic treatment), pathogens may colonize, cause disease • Some antibiotics inhibit Lactobacillus (predominate vagina of mature females, suppress growth of Candida albicans); results in vulvovaginal candidiasis • Oral antibiotics can inhibit intestinal microbiota, allow overgrowth of toxin-producing Clostridium difficile The Normal Microbiota The Protective Role of the Normal Microbiota (continued…) • Stimulation of adaptive immune system-CRITICAL • Mice reared in microbe-free environment have greatly underdeveloped mucosal-associated lymphoid tissue (MALT); antibodies against normal microbiota bind to pathogens as well • Important in development of oral tolerance • Immune system learns to lessen response to many microbes that routinely inhabit gut as well as food – Basis of hygiene hypothesis, which proposes insufficient exposure to microbes can lead to allergies The Normal Microbiota The Dynamic Nature of the Normal Microbiota • Healthy human fetus sterile until just before birth • Exposure during birth and through contact with people, food, and environment lead to microbes becoming established on • find that families often share similar microbial populations, and important gut microbes are acquired from the mother • Critical for proper gut development—first colonizers from mom • Composition of normal microbiota is dynamic • Changes occur over the life of a person. Younger people tend to have different compositions than older people. • Responses to physiological changes (e.g., hormonal changes), activities and diet (e.g., consuming food) Microbiota alter the chemistry of your gut Ruth Ley, Peter Turnbaugh, Jeffrey Gordon and colleagues at Washington University link between the microbiota and obesity by studying a special strain -Obese mice had 50% fewer Bacteroidetes and 50% more Firmicutes in their bowels than their lean counterparts. The link between the microbiota and obesity became even clearer when Gordon looked at a special strain of mice with no microbiota of their own. When the team transplanted the microbiota from fat and lean mice into the germ-free strains, those colonized by microbiota from fat donors packed on far more weight than those paired with lean donors. Comparisons of microbiota of fat and lean mice at a genetic level: --fat mice showed much stronger activation of genes for carbohydrate-destroying enzymes, which break down otherwise indigestible starches and sugars. As a result, these mice were extracting more energy from their food than their lean cousins. The bacteria were also manipulating the animals’ own genes, --triggered biochemical pathways that store fats in the liver and muscles, rather than metabolize them. Fat Bacteria More Firmicutes --break down carbohydrates better --trigger biochemical pathways to store fat Thin bacteria More Bacteroidetes Principles of Infectious Disease Key Terms. Colonization--microbe establishes on body surface internal or external • Infection usually refers to pathogen • subclinical: no or mild symptoms • Infectious disease shows noticeable impairment – Symptoms are subjective effects experienced by patient (e.g., pain and nausea) – Signs are objective evidence (e.g., rash, pus formation, swelling) • Initial infection is primary infection – Damage can predispose individual to developing a secondary infection (e.g., respiratory illness impairing mucociliary escalator) Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Fig. 24.1 Clostridium difficile Parotid salivary gland •Oral cavity Gr+,containing rod, spore forming, obligate anaerobe. Mumps tongue and teeth Produces cytotoxins Dental caries disease of gut microbiome, in Salivary •Periodontal Member low glands numbers, Esophagus Esophagitis --It most commonly occurs in patients in hospitals on antibiotic therapy. •Liver Can also be acquired Hepatitis Stomach Gastritis Gastric ulcer Pancreas Difficult to kill with disinfectants (spores) Organ Function Oral cavity Obtains and processes food Salivary glands Secrete saliva Esophagus Transports food to stomach Stomach Stores food; mechanical digestion; breaks down some proteins Pancreas Secretes digestive enzymes Liver Produces bile to assist in fat digestion Gallbladder Pancreatitis Small intestine Enteritis Duodenal ulcer • Mild to severe symptoms including Large colitis intestine Dysentery (inflammation of the colon). Appendix Colitis Appendicitis Rectum • Treatment: Often stopping the antibiotics, Anus if possible, alleviates the problem. Food molecules This is a secondary infection Capillaries Lymphatic vessel Small intestine Site of most digestion and absorption of nutrients Large intestine Absorbs some water and minerals; prepares waste Villus Epithelial cells Microvilli Gallbladder Stores bile until needed Smooth muscle Nerve fibers Upper digestive tract Lower digestive tract Principles of Infectious Disease Pathogenicity • Primary pathogen is microbe or virus that causes disease in otherwise healthy individual • Diseases such as plague, malaria, measles, influenza, diphtheria, tetanus, tuberculosis, etc. • Opportunistic pathogen (opportunist) causes disease only when body’s innate or adaptive defenses are compromised or when introduced into unusual location • Can be members of normal microbiota or common in environment (e.g., Pseudomonas; E. coli; C. difficile) • Virulence refers to degree of pathogenicity • Virulence factors are traits that allow microorganism to cause disease 16.3. Principles of Infectious Disease Characteristics of Infectious Disease • Communicable or contagious diseases easily spread • Infectious dose is number of microbes necessary to establish infection • ID50 is number of cells that infects 50% of population • Shigellosis results from ~10–100 ingested Shigella • Salmonellosis results from as many as 106 ingested Salmonella enterica serotype Enteritidis – Difference partially reflects ability to survive stomach acid Course of Infectious Disease • Incubation period: time between infection and onset • Illness: signs and symptoms of disease • May be preceded by prodromal phase (vague symptoms) • Convalescence: recuperation, recovery from disease • Carriers may harbor and spread infectious agent for long periods of time Incubation period Illness Convalescence Acute. Illness is short term because the pathogen is eliminated by the host defenses; person is usually immune to reinfection. Incubation period Illness (long lasting) Chronic. Illness persists over a long time period. Incubation period Illness Latent. Illness may recur if immunity weakens. Convalescence Latency Recurrence Acute and Persistent Infections Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • Acute: • Persistent/chronic: • May develop slowly, Continue for years or lifetime • May or may not have symptoms Infectious virions Disease Influenza State of Virus Virus disappears after disease ends. Time (days) (a) Chronic infection (hepatitis B) Appearance of symptoms and infectious virions • Rapid onset • Short duration Appearance of symptoms and infectious virions Acute infection (influenza) Hepatitis B Days State of Virus After initial infection with or without disease symptoms, infectious virus is released from host with no symptoms. Release of virus Time Years (b) • Latent infections: never completely eliminated; may reactivate Appearance of symptoms and infectious virions Latent infection (cold sores) Cold sores Virus activation Non-infectious Days Time Cold sores State of Virus After initial infection, virus is maintained in neurons in non-infectious state. Virus activated to produce new disease symptoms. Years (c) These apply to both viruses and bacteria (Mycobacterium tuberculosis, M. leprae, S. typhae (Typhoid Mary)) Distribution of Pathogen • Localized infection: microbe limited to small area (e.g., boil caused by Staphylococcus aureus) • Systemic infection: agent disseminated throughout body (e.g., measles) • Suffix -emia means “in the blood” • Bacteremia: bacteria circulating in blood – Not necessarily a disease state (e.g., can occur transiently following vigorous tooth brushing • Toxemia: toxins circulating in bloodstream • Viremia: viruses circulating in bloodstream • Septicemia or sepsis: acute, life-threatening illness caused by infectious agents or products in bloodstream Koch’s Postulates Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 1 2 The microorganism must be present in every case of the disease, but not in healthy hosts. The microorganism must be grown in pure culture from diseased hosts. Koch’s Postulates continued 3 4 The same disease must be produced when a pure culture of the microorganism is introduced The same microorganism must be recovered from the experimentally infected hosts. Establishing the Cause of Infectious Disease Koch’s Postulates (continued…) • There are limitations • Some organisms don’t grow in lab medium (e.g., causative agent of syphilis) • Infected individuals do not always have symptoms (e.g., cholera, polio) • Some diseases are polymicrobial (e.g., periodontal) • Suitable animal hosts not always available for testing Molecular Koch’s Postulates (kinda the same but using genes) • Virulence factor gene or product found in pathogenic strains of organism • Mutating gene to disrupt function should reduce virulence • Reversion or replacement of gene should restore Mechanisms of Pathogenesis—how do pathogens make us sick? General patterns • Produce toxins that are ingested • E.g., Clostridium botulinum, Staphylococcus aureus • Colonize mucous membranes, produce toxins • E.g., Vibrio cholerae, E. coli O157:H7, Corynebacterium diphtheriae • Invade host tissues, avoid defenses – E.g., Mycobacterium tuberculosis, Yersinia pestis, Salmonella enterica • Invade host tissues, produce toxins • E.g., Shigella dysenteriae, Clostridium tetani • Pathogens and hosts usually evolve toward balanced pathogenicity (e.g., myxoma virus and rabbits) Establishing Infection Adherence • Adhesins attach to host cell receptor • Often on tips of pili (or fimbriae) • Can be component of capsules or various cell wall proteins • Binding highly specific; exploits host cell receptor Colonization Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Bacterial cell • Growth in biofilms • Siderophores-bind iron • Avoidance of secretory IgA • Rapid pili turnover-shed the IgA, antigenic variations—avoid detection, IgA proteases—cut IgA • Compete with normal microbiota, tolerate toxins Pili with adhesins Receptor Host cell Invasion—Breaching the Anatomical Barriers Penetrating the Skin Borrelia burgdorferi (Lyme’s disease) • Difficult barrier to penetrate; bacteria rely on injuries • Staphylococcus aureus enters via cut or wound; Yersinia pestis is injected by fleas, Lyme’s disease by tick bite Penetrating Mucous Membranes-respiratory and gut tracts Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • CommoneEntry point pathogens • Directed Uptake by Cells • Pathogen induces cells to engulf via endocytosis – Salmonella uses type III secretion system to inject effector proteins; actin molecules rearrange, yield membrane ruffling Ruffle M-cell surface 10 µm Bacterial cell Courtesy of Mark A. Jepson, from Trends in Microbiology v6, issue 1:359-365, 1 Sept 1998, "Studying M cells and their role in infection"; M.A. Jepson and M.A. Clark, Elsevier Press Invasion—Penetrating mucus membranes Delivering Effector Proteins to Host Cells • Secretion systems in Gram-negatives • Several types discovered; some can inject molecules other than proteins • Type III secretion system Effector Bacterial (injectisome) cytoplasm – Effector proteins induce changes (e.g., altering of cell’s Bacterial periplasm cytoskeleton structure) – Can induce uptake of bacterial cells Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Recall from CH 24 pathogens Shigella, Salmonella, E. coli Host cell Courtesy of Chihiro Sasakawa, University of Tokyo Salmonella attach to cells at the end of the small intestine T3SS injects effectors and the cells are taken into cell in phagosomes. These are transported across the cell and exported (exocytosis) where they are picked up by macrophage which are often destroyed. The infection remains localized. Inflammatory response results in fluid secretion. Invasion—Penetrating mucus membranes 3 Within an epithelial cell, Shigella cells cause Exploiting Antigen-Sampling Processes of the Pyer’s patches (Mucosal-associated lymphoid tissue (MALT) and their M cells) the host actin to polymerize. This propels the bacterial cell, sometimes with enough force to push it into the next cell. Lumen of the intestine Mucous membrane Shigella M cell • Shigella survives phagocytosis by macrophages; induces apoptosis; binds to base of mucosal epithelial cells and induces uptake. Salmonella typhae also. • Some invade by alveolar(lung) macro-phages (e.g., Mycobacterium tuberculosis produces surface proteins, directs uptake, Tissue Macrophages 2 Shigella cells attach to the base of the epithelial cells and induce these cells to engulf them. 1 Macrophages in the Peyer’s patches engulf material that passes through M cells. Shigella cells survive and replicate, causing the phagocytes to undergo apoptosis. Avoiding the Host Defenses Hiding Within a Host Cell • Allows avoidance of complement proteins, phagocytes, and antibodies • Shigella directs transfer from intestinal epithelial cell to adjacent cells by causing host cell actin polymerization • Listeria monocytogenes (meningitis) does the same Avoiding Killing by Complement System Proteins • Serum resistant bacteria resist Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Alternative pathway Lectin pathway Classical pathway Triggered by Triggered by Triggered by C3b binding to microbial invaders Mannose-binding lectin (MBL) binding to microbial invaders Antibodies binding to microbial invaders C3b MBL Antibody Formation of C3 convertase Splits C3 C3 Inflammatory response C3a and C5a induce changes that contribute to local vascular permeability and attract phagocytes. C3a Opsonization C3b binds to microbial cells, functioning as an opsonin. C3b C3b C5 The complement system revisitedpathogens have ways to avoid binding to the C3b, deactivating C5a and C5b to avoid attracting phagocytes or being attacked by the membrane attack complex (MACs). The MAC attack. C5a Combines with C3 convertase to form an enzyme that splits C5 C5b C5b Lysis of foreign cells C5b combines with complement C6 C9 proteins C6, C7, C8, and C9 C7 C9 C9 C9 to form membrane attack C8 complexes that insert into cell membranes. MAC Avoiding Destruction by Phagocytes Preventing Encounters with Phagocytes •C5a peptidase: degrades chemoattractant C5a (Streptococcus pyogenes) Microbes •Membrane-damaging toxins: kill phagocytes, S. pyogenes makes streptolysin O Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 1 Prevent encounters with phagocytes • C5a peptidase • Cytolytic toxins C5a 2 Avoid recognition and attachment • Capsules • M protein • Fc receptors Pseudopod C3b receptors on phagocyte C3b Phagocyte Lysosomes C3b Phagosome Phagolysosome Digestive enzymes 3 Survive within phagocytes • Escape from the phagosome • Prevent phagosomelysosome fusion • Survive within the phagosome Avoiding Destruction by Phagocytes • Avoid Recognition and Attachment • Capsules: interfere with opsonization; some bind host’s regulatory proteins that inactivate C3b – E.g., Streptococcus pneumoniae • M protein: cell wall of Streptococcus pyogenes binds regulatory protein that inactivates C3b --So does Neisseria gonorrhoerae. Regulation of the complement system Neisseria gonorrhoeae hijacks host system, binds complement regulatory proteins to avoid activation of membrane attack complex Avoid recognition by antibodies Fc receptors: bind Fc region of antibodies Staphylococcus aureus, Streptococcus pyogenes Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Antigenbinding site Variable region Fab region Light chain Fc region Constant region Heavy chain (a) (b) (c) What can happen when antibody binds antigen. Opsonization Bacterium Complement System Activation Neutralization Phagocyte Complement system protein Virus Toxin Bacterium Opsonization by C3b Inflammatory response Lysis of foreign cells Antibody-Dependent Cellular Cytotoxicity (ADCC) Infected “self” cell Immobilization and Prevention of Adherence Natural killer cell Cross-Linking Bacterium Bacterium Kills cell Flagellum Fc receptors: bind Fc region of antibodies Staphylococcus aureus, Streptococcus pyogenes Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Bacterium Fab region of the antibody (binds to antigen) Antibody (a) Fc receptor on bacterium (binds the Fc region of an antibody) Fc region of the antibody (phagocytes recognize and bind this region as an initial step in phagocytosis) (b) Avoiding Destruction by Phagocytes • Surviving Within Phagocytes • Escape from phagosome: prior to fusion with lysosomes Listeria monocytogenes -- pores in membrane; Shigella species lyse phagosome • Prevent phagosome-lysosome fusion: Salmonella produce protein that blocks fusion process • Survive within phagolysosome: few can survive Phagocyte destructive environment. • Coxiella burnetii (Q fever) Phagosome Phagolysosome Digestive enzymes Lysosomes Capsules and biofilms also help bacteria hide from the immune syetem Avoiding Destruction by Phagocytes, continued… Avoiding Antibodies • IgA protease: cleaves IgA, found in mucus, secretions – Neisseria gonorrhoeae and others produce • Antigenic variation: alter structure of surface antigens, stay ahead of antibody production – Neisseria gonorrhoeae varies antigenic structure of pili (recall the gene swapping that N. gon. does through transformation by DNA uptake) • Mimicking host molecules: cover surface with molecules similar to those found in host cell, appear to be “self” – Streptococcus pyogenes form capsule from hyaluronic acid, a polysaccharide found in tissues Damage to the Host Exotoxins: proteins with damaging effects • Secreted or leak into tissue following bacterial lysis • Foodborne intoxication results from consumption (Botulism) • Destroyed by heating; most exotoxins heat-sensitive • Can act locally or systemically • Proteins, so immune system can generate antibodies • Many fatal before immune response mounted • Vaccines therefore critical: toxoids are inactivated toxin • Antitoxin is suspension of neutralizing antibodies to treat • Neurotoxins damage nervous system • Enterotoxins cause intestinal disturbance • Cytotoxins damage variety of cell types Damage to the Host Direct or indirect effects • Direct (e.g., toxins produced) • Indirect (e.g., immune response) Three main categories of Exotoxins based on structure and mechanisms (Table 16.1 lists many examples) 1) A-B toxins 2) Membrane damaging toxins 3) Superantigens Exo- vs Endotoxin : Exotoxin is a protein made by the cell in the cytoplasm, may be exported. Endotoxin refers to the part of the cell membrane of Gram Negative bacrteria—usually the lipid A 16.8. Damage to the Host 16.8. Damage to the Host Exotoxins (continued…) • A-B toxins have two parts • A subunit is toxic, usually an enzyme • B subunit binds to cell, dictates cell type to be infected – Structure allows novel approaches for vaccines and therapies; can use Active subunit A B Binding subunit B subunit to deliver medically useful compounds to specific Binding site cell type Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. RECALL these from intestinal diseases-CH 24 1 B subunit binds to a specific molecule on the host cell. 2 Toxin is taken up by endocytosis. 3 Toxin subunits separate allowing the A subunit to enter the cytoplasm. A-B toxin Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. B binds to cell A enters V. cholerae bacterium 1 The A-B toxin’s B subunit attaches to receptors on cell membrane; the A subunit enters the cell. B 2 The A subunit locks a G protein in the “active” mode, turning on adenylate cyclase. 4 A OFF 10 µm Plasma membrane of intestinal cell A G protein ON cAMP activates ion transport channels in the membrane causing Cl– and other electrolytes to pour out of the cell. ATP Cl– 3 Adenylate cyclase causes the conversion of ATP to cAMP. Adenylate cyclase K+ Na+ ● HCO3– H2O cAMP 5 Water follows electrolytes out of the cell by osmosis. © VeronikaBurmeister/Visuals Unlimited 16.8. Damage to the Host Exotoxins (continued…) • Membrane-Damaging Toxins • Cytotoxins that disrupt plasma membranes, lyse cells • Hemolysins lyse red blood cells • Some insert into membranes, form pores – E.g., streptolysin O from Streptococcus pyogenes • Phospholipases hydrolyze phospholipids of membranes – α-toxin of Clostridium perfringens (gas gangrene) Exotoxins (continued…) • Superantigens: simultaneously bind MHC class II and T-cell receptor Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. • T-cell interprets as antigen recognition • Toxic effect is from massive cytokine release from TH • Include toxic shock syndrome toxin (TSST) and several by Staphylococcus aureus, Streptococcus pyogenes Antigen-presenting cell Antigen-presenting cell MHC class II molecule Peptide recognized by T-cell receptor Peptide not recognized by T-cell receptor Superantigen T-cell receptor Helper T cell a Helper T cell that recognizes peptide is activated; it proliferates and releases cytokines. Helper T cell b Helper T cell that does not recognize peptide is activated because of superantigen; it proliferates and releases cytokines. Adapted from Arousing the Fury of the Immune System, 1998 Howard Hughes Medical Institute. Effector functions of Cytotoxic T cells Exotoxins (continued…) • Other Toxic Proteins • Some damaging proteins are not A-B toxins, membranedamaging toxins, or superantigens • E.g., exfoliatin from Staphylococcus aureus causes scalded skin syndrome – Destroys material that binds together skin layers – Bacteria may be growing in small lesion, but toxin spreads systemically • Various hydrolytic enzymes including proteases, lipases, and collagenases break down connective tissue – Destroy tissues, some help bacteria spread Damage to the Host Endotoxin, Other Bacterial Cell Wall Components • Endotoxin is lipopolysaccharide (LPS) • Lipid A triggers inflammatory response – When localized, response helps clear – When systemic, causes widespread response: septic shock or endotoxic shock • Lipid A typically released following cell lysis – Phagocytosis, MAC formation, certain antibiotics • Activates innate and adaptive defenses – Toll-like receptors (monocytes, macrophages, others) induce cytokine production; also T-independent antigen response of B-cells at high concentrations • Heat-stable; autoclaving does not destroy • Peptidoglycans, other components also trigger Damaging Effects of the Immune Response • Damage Associated with Inflammation • Phagocytic cells can release enzymes and toxic products • Damage Associated with Adaptive Immunity • Immune complexes: antigen-antibody complexes can form, settle in kidneys and joints, and activate complement system leading to inflammation – E.g., acute glomerulonephritis following skin, throat infections of S. pyogenes • Cross-reactive antibodies: may bind to body’s own tissues, promote autoimmune response – E.g., acute rheumatic fever following S. pyogenes infection