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Chapter 26 • The Tree of Life Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Changing Life on a Changing Earth • Life is a continuum extending from the earliest organisms to the great variety of species that exist today Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Geological events that alter environments – Change the course of biological evolution • Conversely, life changes the planet that it inhabits Figure 26.1 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Conditions on early Earth made the origin of life possible • Hypothesis: – Chemical and physical processes on early Earth produced very simple cells through a sequence of stages Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Earth formed ~ 4.6 billion years ago • Earth’s early atmosphere – Contained water vapor + many chemicals released by volcanic eruptions – Little or no O2 reducing atmosphere Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Miller – Urey experiment • Lab simulations of early Earth atmosphere: EXPERIMENT Miller and Urey set up a closed system in their laboratory to simulate conditions thought to have existed on early Earth. A warmed flask of water simulated the primeval sea. The strongly reducing “atmosphere” in the system consisted of H2, methane CH4), ammonia (NH3), and water vapor. Sparks were discharged in the synthetic atmosphere to mimic lightning. A condenser cooled the atmosphere, raining water and any dissolved compounds into the miniature sea. Water vapor CH4 Electrode RESULTS As material circulated through the apparatus, Miller and Urey periodically collected samples for analysis. They Condenser identified a variety of organic molecules, including amino acids such as alanine and glutamic acid that are common in the proteins of organisms. They also found many other amino acids and complex, oily hydrocarbons. Cold water CONCLUSION Organic molecules, a first step in the origin of life, can form in a strongly reducing atmosphere. Cooled water containing H2O Figure 26.2 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings organic molecules Sample for chemical analysis • First organic cmpds. may have formed near submerged volcanoes and deep-sea vents Figure 26.3 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Some organic cmpds. may have come from space • Carbon cmpds. have been found in some of the meteorites Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Possibly, life is not restricted to Earth Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Abiotic synthesis • Small organic molecules – Polymerize when they are concentrated on hot sand, clay, or rock Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Protobionts – Aggregates of abiotically produced molecules surrounded by membrane Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Protobionts could have formed spontaneously from abiotically produced organic cmpds • e.g., small membrane-bounded droplets called liposomes form when lipids are added to water Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Glucose-phosphate 20 m Glucose-phosphate Phosphorylase Starch Amylase Phosphate Maltose Maltose Figure 26.4a, b (a) Simple reproduction. This liposome is “giving birth” to smaller liposomes (LM). Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings (b) Simple metabolism. If enzymes—in this case, phosphorylase and amylase—are included in the solution from which the droplets self-assemble, some liposomes can carry out simple metabolic reactions and export the products. The “RNA World” and the Dawn of Natural Selection • The first genetic material – probably RNA, not DNA Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • RNA molecules (ribozymes) catalyze many different reactions, including – Self-splicing – Making copies of short stretches of their own sequence Ribozyme (RNA molecule) 3 Template Nucleotides Figure 26.5 Complementary RNA copy Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings 5 5 • Early protobionts with self-replicating, catalytic RNA – used resources and increased in number through natural selection Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • The fossil record chronicles life on Earth • Study of fossils – Window into the lives of organisms that existed long ago, information about the evolution of life over billions of years Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Fossil dating • Sedimentary strata – Reveal the relative ages of fossils Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Index fossils – Similar fossils found in the same strata in different locations – Strata at one location correlates w/ strata f/ another location Figure 26.6 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Absolute ages of fossils Ratio of parent isotope to daughter isotope – Determined by radiometric dating Accumulating “daughter” isotope 1 2 Remaining “parent” isotope 1 Figure 26.7 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings 14 18 2 Time (half-lives) 3 1 16 4 • Magnetic reversals of the north and south magnetic poles – Have occurred repeatedly in the past – record on rocks throughout the world Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Geologic record divided into – Three eonsand many eras and periods • Time periods – Mark major changes in the composition of fossil species Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Table 26.1 • Geologic record Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Mass Extinctions – Rapid global environmental changes a majority of species were swept away Millions of years ago 600 400 500 300 200 100 0 2,500 100 Number of taxonomic Permian mass families extinction 80 2,000 Extinction rate ( 60 1,500 40 1,000 Cretaceous mass extinction Number of families ( ) Extinction rate ) 500 20 Paleozoic Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Mesozoic Paleogene Cretaceous Jurassic Triassic Permian Carboniferous Devonian Ordovician Silurian Cambrian Proterozoic eon Figure 26.8 Cenozoic Neogene 0 0 Major mass extinctions • The Permian extinction – Claimed 96% of marine animal species and 8 out of 27 orders of insects – Possibly caused by enormous volcanic eruptions Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Cretaceous (KT) extinction – Doomed many marine and terrestrial organisms, notably dinosaurs – Likely/ possibly caused by the impact of a meteor NORTH AMERICA Yucatán Peninsula Chicxulub crater Figure 26.9 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • After mass extinctions adaptive radiations into newly vacated ecological niches Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Analogy of a clock – places major events in the Earth’s history in the context of the geological record Cenozoic Humans Land plants Origin of solar system and Earth Animals 4 1 Proterozoic Archaean Eon Eon Billions of years ago 2 3 Multicellular eukaryotes Figure 26.10 Single-celled eukaryotes Prokaryotes Atmospheric oxygen Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • As prokaryotes evolved, they exploited and changed young Earth • Oldest known fossils are stromatolites – Rocklike structures w/ many layers of bacteria and sediment – 3.5 billion years old Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings (a) Lynn Margulis (top right), of the University of Massachussetts, and Kenneth Nealson, of the University of Southern California, are shown collecting bacterial mats in a Baja California lagoon. The mats are produced by colonies of bacteria that live in environments inhospitable to most other life. A section through a mat (inset) shows layers of sediment that adhere to the sticky bacteria as the bacteria migrate upward. (b) Some bacterial mats form rocklike structures called stromatolites, such as these in Shark Bay, Western Australia. The Shark Bay stromatolites began forming about 3,000 years ago. The inset shows a section through a fossilized stromatolite that is about Figure 26.11a, b 3.5 billion years old. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Prokaryotes were Earth’s sole inhabitants – From 3.5 to about 2 billion years ago Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Electron transport systems of a variety of types – Essential to early life – Some aspects that possibly precede life itself Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Photosynthesis and the Oxygen Revolution • Earliest types of photosynthesis – Did not produce O2 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Oxygenic photosynthesis – Evolved ~ 3.5 bya in cyanobacteria Figure 26.12 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • O2 began to accumulate in the atmosphere ~ 2.7 bya – Challenge for life – Opportunity to gain energy f/ light – Allowed organisms to exploit new ecosystems Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Eukaryotic cells arose from symbioses and genetic exchanges between prokaryotes • Question?? how eukaryotic cells evolved from much simpler prokaryotes Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Oldest fossils of eukaryotic cells – 2.1 billion years Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Endosymbiosis – Mitochondria and plastids were formerly small prokaryotes living within larger host cells Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Probably undigested prey or internal parasites Cytoplasm DNA Plasma membrane Ancestral prokaryote Infolding of plasma membrane Endoplasmic reticulum Nucleus Nuclear envelope Engulfing of aerobic heterotrophic prokaryote Cell with nucleus and endomembrane system Mitochondrion Mitochondrion Engulfing of photosynthetic prokaryote in some cells Ancestral heterotrophic eukaryote Figure 26.13 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Plastid Ancestral Photosynthetic eukaryote • Eventually host and endosymbionts would have become a single organism Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Supporting evidence: – Similar inner membrane structures and functions – Both have their own circular DNA (genes) – Own ribosomes Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Eukaryotic Cells as Genetic Chimeras • Additional endosymbiotic events and horizontal gene transfers – large genomes and complex structures Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Eukaryotic flagella and cilia – May have evolved f/ symbiotic bacteria, 50 m Figure 26.14 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Multicellularity evolved several times Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Molecular clocks date the common ancestor of multicellular eukaryotes to 1.5 billion years • Oldest known fossils of eukaryotes ~ 1.2 bya Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Chinese paleontologists recently described 570-million-year-old fossils – probably animal embryos Figure 26.15a, b (a) Two-cell stage Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings 150 m (b) Later stage 200 m • The first multicellular organisms were colonies – Collections of autonomously replicating cells Figure 26.16 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings 10 m • Some cells in the colonies – Became specialized for different functions • The first cellular specializations – Had already appeared in the prokaryotic world Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The “Cambrian Explosion” • Most of the major phyla of animals – Appear ‘suddenly’ in the fossil record that was laid down during the first 20 million years of the Cambrian period Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • 2 animal phyla, Cnidaria and Porifera Early Paleozoic era (Cambrian period) Millions of years ago 542 Late Proterozoic eon Figure 26.17 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Arthropods Molluscs Annelids Brachiopods Chordates Echinoderms Cnidarians 500 Sponges – Are older, dating from the late Proterozoic • Molecular evidence – Suggests that many animal phyla originated and began to diverge much earlier, between 1 billion and 700 million years ago Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Plants, fungi, and animals – Colonized land about 500 million years ago Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Symbiotic relationships between plants and fungi – Are common today and date from this time Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Continental Drift • Earth’s continents are not fixed – They drift across our planet’s surface on great plates of crust that float on the hot underlying mantle Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Often, these plates slide along the boundary of other plates – Pulling apart or pushing against each other Eurasian Plate North American Plate Juan de Fuca Plate Caribbean Plate Philippine Plate Arabian Plate Indian Plate Cocos Plate Pacific Plate Nazca Plate South American Plate Scotia Plate Figure 26.18 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings African Plate Australian Plate Antarctic Plate • Many important geological processes – Occur at plate boundaries or at weak points in the plates themselves Volcanoes and volcanic islands Oceanic ridge Trench Figure 26.19 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • The formation of the supercontinent Pangaea during the late Paleozoic era India collided with Eurasia just 10 million years ago, forming the Himalayas, the tallest and youngest of Earth’s major mountain ranges. The continents continue to drift. Eurasia 65.5 Millions of years ago – And its breakup during the Mesozoic era explain many biogeographic puzzles Cenozoic 0 Africa South America Antarctica Laurasia Mesozoic 135 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Paleozoic 251 Figure 26.20 India Madagascar By the end of the Mesozoic, Laurasia and Gondwana separated into the present-day continents. By the mid-Mesozoic, Pangaea split into northern (Laurasia) and southern (Gondwana) landmasses. At the end of the Paleozoic, all of Earth’s landmasses were joined in the supercontinent Pangaea. • New information has revised our understanding of the tree of life • e.g. Molecular (e.g. DNA, protein) Data – insights to deepest branches of the tree of life Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Early classification systems had two kingdoms – Plants and animals Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Robert Whittaker’s system with five kingdoms – Monera, Protista, Plantae, Fungi, and Animalia Plantae Fungi Protista Figure 26.21 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Monera Animalia Reconstructing the Tree of Life: A Work in Progress • A three domain system – Has replaced the five kingdom system – Includes the domains Archaea, Bacteria, and Eukarya • Each domain – Has been split by taxonomists into many kingdoms Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Figure 26.22 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Domain Archaea Domain Bacteria Universal ancestor Domain Eukarya Charophyceans Chlorophytes Red algae Cercozoans, radiolarians Stramenopiles (water molds, diatoms, golden algae, brown algae) Chapter 27 Alveolates (dinoflagellates, apicomplexans, ciliates) Euglenozoans Diplomonads, parabasalids Euryarchaeotes, crenarchaeotes, nanoarchaeotes Korarchaeotes Gram-positive bacteria Cyanobacteria Spirochetes Chlamydias Proteobacteria • One current view of biological diversity Chapter 28 Figure 26.21 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Plants Fungi Animals Bilaterally symmetrical animals (annelids, arthropods, molluscs, echinoderms, vertebrates) Cnidarians (jellies, coral) Chapter 32 Sponges Chapter 31 Choanoflagellates Club fungi Sac fungi Chapter 28 Arbuscular mycorrhizal fungi Zygote fungi Chytrids Chapter 30 Amoebozoans (amoebas, slime molds) Angiosperms Gymnosperms Seedless vascular plants (ferns) Bryophytes (mosses, liverworts, hornworts) Chapter 29 Chapters 33-49