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Chapter 27 Prokaryotes and the Origins of Metabolic Diversity PowerPoint Lectures for Biology, Seventh Edition Neil Campbell and Jane Reece Lectures by Chris Romero Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Overview – They’re Almost Everywhere! • Most prokaryotes are microscopic – But what they lack in size they more than make up for in numbers • The number of prokaryotes in a single handful of fertile soil – Is greater than the number of people who have ever lived Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Adaptive Ability of Prokaryotes • Prokaryotes thrive almost everywhere including places too acidic, too salty, too cold, or too hot for most other organisms Figure 27.1 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Bacteria and Archaea • Bacteria and Archaea are the two main branches of prokaryotic evolution. • Traditionally: – Prokaryotes were classified as Monera • New Scheme – 3 Domains: – Bacteria & Archaea – Archaea differ from bacteria structurally, biochemically, and physiologically. – Archaea tend to live in extreme environments. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Three Domains of Life Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Genetic Diversity of Prokaryotes • Biologists are discovering – That these organisms have an astonishing genetic diversity • Structural, functional, and genetic adaptations contribute to prokaryotic success • Most prokaryotes are unicellular – Although some species form colonies Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Common Prokaryotic Shapes • Prokaryotic cells have a variety of shapes – The three most common of which are spheres (cocci), rods (bacilli), and spirals (spirilla). 1 m Figure 27.2a–c (a) Spherical (cocci) 2 m (b) Rod-shaped (bacilli) Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings 5 m (c) Spiral Cell-Surface Structures • One of the most important features of nearly all prokaryotic cells – Is their cell wall, which maintains cell shape, provides physical protection, and prevents the cell from bursting in a hypotonic environment • Using a technique called the Gram stain – Scientists can classify many bacterial species into two groups based on cell wall composition, Gram-positive and Gramnegative Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Gram Positive v/s Gram Negative Bacteria Lipopolysaccharide Cell wall Peptidoglycan layer Cell wall Outer membrane Peptidoglycan layer Plasma membrane Plasma membrane Protein Protein Grampositive bacteria Gramnegative bacteria 20 m (a) Gram-positive. Gram-positive bacteria have a cell wall with a large amount of peptidoglycan that traps the violet dye in the cytoplasm. The alcohol rinse does not remove the violet dye, which masks the added red dye. Figure 27.3a, b Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings (b) Gram-negative. Gram-negative bacteria have less peptidoglycan, and it is located in a layer between the plasma membrane and an outer membrane. The violet dye is easily rinsed from the cytoplasm, and the cell appears pink or red after the red dye is added. Pathogenic Bacteria • Among pathogenic bacteria, gram-negative species are generally more threatening than gram-positive species. – They are commonly more resistant to antibiotics than gram positive species, and the lipopolysaccharides on their walls are often toxic. • Many antibiotics inhibit the synthesis of peptidoglycan in bacteria and thus prevent the formation of a functional cell wall – particularly in gram-positive species. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Protective Capsule • The cell wall of many prokaryotes is covered by a capsule, a sticky layer of polysaccharide or protein 200 nm Capsule Figure 27.4 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Attachment in Prokaryotes • Some prokaryotes have fimbriae and pili which allow them to stick to their substrate or other individuals in a colony Fimbriae 200 nm Figure 27.5 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Motility • Most motile bacteria propel themselves by flagella which are structurally and functionally different from eukaryotic flagella Flagellum Filament 50 nm Cell wall Hook Basal apparatus Figure 27.6 Plasma membrane Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Taxis • In a heterogeneous environment, many bacteria exhibit taxis – The ability to move toward or away from certain stimuli • Chemitaxis • Phototaxis • Magnetitaxis Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Internal and Genomic Organization • Prokaryotic cells usually lack complex compartmentalization although some prokaryotes do have specialized membranes that perform metabolic functions 0.2 m 1 m Respiratory membrane Thylakoid membranes Figure 27.7a, b (a) Aerobic prokaryote Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings (b) Photosynthetic prokaryote The Prokaryotic Genome • The typical prokaryotic genome is a ring of DNA that is not surrounded by a membrane and that is located in a nucleoid region Chromosome Figure 27.8 1 m Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Plasmids • Some species of bacteria also have smaller rings of DNA called plasmids – Plasmids are separate from the bacterial chromosome Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Reproduction and Adaptation • Prokaryotes reproduce quickly by binary fission – And can divide every 1–3 hours – No mitosis or meiosis Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Reproduction and Adaptation • Prokaryotes have three mechanisms that transfer genes between individuals: – Transformation – Transduction – Conjugation • Rapid reproduction and horizontal gene transfer – Facilitate the evolution of prokaryotes to changing environments Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Endospore • Many prokaryotes form endospores which can remain viable in harsh conditions for centuries Endospore 0.3 m Figure 27.9 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Major Nutritional Modes of Prokaryotes • A great diversity of nutritional and metabolic adaptations have evolved in prokaryotes • Examples of all four models of nutrition are found among prokaryotes – Photoautotrophy – Chemoautotrophy – Photoheterotrophy – Chemoheterotrophy Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Major Nutritional Modes of Prokaryotes Table 27.1 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Nutritional Diversity Among Chemoheterotrophs • The majority of known prokaryotes are chemoheterotrophs: – Saprobes (decomposers that absorb their nutrients from dead organic matter) – Parasites (absorb nutrients from the body fluids of living hosts) Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Metabolic Relationships to Oxygen • Prokaryotic metabolism also varies with respect to oxygen • Obligate aerobes – Require oxygen • Facultative anaerobes – Can survive with or without oxygen • Obligate anaerobes – Are poisoned by oxygen Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Nitrogen Metabolism • Prokaryotes can metabolize nitrogen in a variety of ways • In a process called nitrogen fixation some prokaryotes convert atmospheric nitrogen (N2) to ammonia (NH4) – Nitrogen fixation is the only biological mechanism that makes atmospheric nitrogen available to organisms for incorporation into organic compounds. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Thermophiles • Some archaea – Live in extreme environments • Extreme thermophiles – Thrive in very hot environments Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Halophiles • Extreme halophiles – Live in high saline environments Figure 27.14 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Mehtanogens • Methanogens – Live in swamps and marshes – Produce methane as a waste product – Important decomposers in sewage treatment – Can convert garbage and dung to methane Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Prokaryotes and the Biosphere • Prokaryotes play crucial roles in the biosphere • Prokaryotes are so important to the biosphere that if they were to disappear – The prospects for any other life surviving would be dim Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Chemical Recycling • Prokaryotes play a major role – In the continual recycling of chemical elements between the living and nonliving components of the environment in ecosystems • Chemoheterotrophic prokaryotes function as decomposers – Breaking down corpses, dead vegetation, and waste products • Nitrogen-fixing prokaryotes** – Add usable nitrogen to the environment Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Symbiotic Relationships • Many prokaryotes – Live with other organisms in symbiotic relationships such as mutualism and commensalism Figure 27.15 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Prokaryotic Interactions • Other types of prokaryotes – Live inside hosts as parasites • Prokaryotes have both harmful and beneficial impacts on humans • Some prokaryotes are human pathogens – But many others have positive interactions with humans Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Pathogenic Prokaryotes • Prokaryotes cause about half of all human diseases – Lyme disease is an example Figure 27.16 5 µm Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Pathogenenic Prokarytoes • Pathogenic prokaryotes typically cause disease by releasing exotoxins or endotoxins – Exotoxins are proteins secreted by prokaryotes that can produce disease symptoms even in the absence of the bacterium: • Botulism • Cholera – Endotoxins are components of the outer membranes of gram-negative bacteria • Salmonella • Many pathogenic bacteria – Are potential weapons of bioterrorism Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Prokaryotes in Research and Technology • Experiments using prokaryotes – Have led to important advances in DNA technology Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Bioremediation • Prokaryotes are the principal agents in bioremediation – The use of organisms to remove pollutants from the environment – Sewage treatment, oil spill clean ups, commercial products Figure 27.17 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Human Uses of Prokaryotes • Prokaryotes are also major tools in – Mining – The synthesis of vitamins – Production of antibiotics, hormones, and other products Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings