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CHAPTER 9 Proteins and Their Synthesis Copyright 2008 © W H Freeman and Company CHAPTER OUTLINE 9.1 9.2 9.3 9.4 9.5 9.6 Protein structure Colinearity of gene and protein The genetic code tRNA: the adapter Ribosomes The proteome Surface of the ribosome from the bacterium Haloarcula marismortui Chapter 9 Opener The binding of a drug molecule to the ribosome prevents translation Figure 9-1 Protein structure The peptide bond Figure 9-2a The peptide bond Figure 9-2b Levels of protein structure Figure 9-3 Levels of protein structure Figure 9-3a Levels of protein structure Figure 9-3b Levels of protein structure Figure 9-3c Levels of protein structure Figure 9-3d Colinearity of gene and protein Gene and protein sequences are colinear Figure 9-4 The genetic code Overlapping versus nonoverlapping genetic codes Figure 9-5 The genetic code Figure 9-6 tRNA: the adapter The structure of transfer RNA Figure 9-7 An aminoacyl-tRNA synthetase attaches an amino acid to its tRNA Figure 9-8 Two superimposed tRNAs Figure 9-9 Wobble allows one tRNA to recognize two codons Figure 9-10 Table 9-1 Table 9-2 Ribosomes Protein and RNA molecules compose the two subunits of a ribosome Figure 9-11 rRNA folds up by intramolecular base pairing Figure 9-12 Key sites of interaction in the ribosome Figure 9-13 Key sites of interaction in the ribosome Figure 9-13a Key sites of interaction in the ribosome Figure 9-13b Shine–Dalgarno sequence Figure 9-14 Translation initiation in prokaryotes Figure 9-15 Translation initiation in prokaryotes Figure 9-15 part 1 Translation initiation in prokaryotes Figure 9-15 part 2 Translation initiation in eukaryotes Figure 9-16 Translation initiation in eukaryotes Figure 9-16 part 1 Translation initiation in eukaryotes Figure 9-16 part 2 Steps in translation elongation Figure 9-17 Termination of translation Figure 9-18 A suppressor counteracts the effects of a nonsense mutation Figure 9-19 The proteome Alternative splicing produces related but distinct protein isoforms Figure 9-20 Phosphorylation and dephosphorylation of proteins Figure 9-21 All protein interactions in an organism compose the interactome Figure 9-22 Ubiquitinization targets a protein for degradation Figure 9-23 Signal sequences target proteins for secretion Figure 9-24