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Membranes and Cell Organelles Chapter 2: Pages 32 - 59 1 Chapter 2 - Membranes and cell organelles APOPTOSIS: LIFE OR DEATH OF A CELL Apoptosis: the natural death of cells, also known as ‘programmed cell death’ Details: Natural feature of cells Death and cell reproduction equal in mature organsisms Cancer occurs when ‘apoptosis’ is prevented Auto Immune Disease occurs when too much apoptosis occurs (i.e Alzheimers’ disease) Signals initiating apoptosis may come from either inside or outside a cell. Proteins are suspected of controlling Apoptosis 2 Chapter 2 - Membranes and cell organelles 3 Chapter 2 - Membranes and cell organelles LOOKING AT CELLS 4 Chapter 2 - Membranes and cell organelles (Definition) Cells: basic structural and functional units of all living organisms (Definition) Organelles: structural unit in cells that performs a key function in cellular metabolism organelle (ôr g -n l ) A structure or part that is enclosed within its own membrane inside a cell and has a particular function. Organelles are found only in eukaryotic cells and are absent from the cells of prokaryotes such as bacteria. The nucleus, the mitochondrion, the chloroplast, the Golgi apparatus, the lysosome, and the endoplasmic reticulum are all examples of organelles. Some organelles, such as mitochondria and chloroplasts, have their own genome (genetic material) separate from that found in the nucleus of the cell. Such organelles are thought to have their evolutionary origin in symbiotic bacteria or other organisms that have become a permanent part of the cell. 5 Chapter 2 - Membranes and cell organelles Living cells can be divided into 2 distinct groups according to the organisation of their internal structures. Prokaryotic Cells – Lack of a nucleus or clear structure to house their DNA. (ie bacteria) Eukaryotic Cells - Contain structures called organelles and the DNA is enclosed inside a membrane bound nucleus. (ie plants, animals, fungi & protists) 6 Chapter 2 - Membranes and cell organelles 7 Chapter 2 - Membranes and cell organelles 8 Chapter 2 - Membranes and cell organelles Comparing Prokaryotic and Eukaryotic Cells 9 This particular eukaryotic cell happens to be an animal cell, but the cells of plants, fungiStructure and protists are also eukaryotic. Chapter 2 - Cells: & Function Prokaryotic Cells Are smaller than eukaryotic cells Have no nucleus to house their DNA Often have a protective cell wall on the outside of their plasma membrane Include all bacteria and Archae 10 Chapter 2 - Membranes and cell organelles Typical Sizes of Cells 11 Chapter 2 - Membranes and cell organelles Image courtesy of WebPath The light microscope The light microscope has a limit of resolution of about 200 nm (0.2 µm). This limit is due to the wavelength of light (0.40.7 µm). Cells observed under a light microscope can be alive, or fixed and stained 12 Chapter 2 - Membranes and cell organelles Image courtesy of WebPath The Transmission Electron Microscope (TEM) The Transmission Electron Microscope (TEM) has a limit of resolution of about 2nm. This is due to limitations of the lens used to focus electrons onto the sample. A TEM looks at replicas of dead cells, after fixation and heavy metal ion staining. Electrons are scattered as they pass through a thin section of the specimen, and then detected and projected onto an image on a13fluorescent screen. Chapter 2 - Membranes and cell organelles Image courtesy of CIPE The Scanning Electron Microscope (SEM) The Scanning Electron Microscope (SEM) also has a limit of 2nm. Like the TEM, the SEM allows you to look at replicas of dead cells, after fixation and heavy metal ion staining. With this technique, electrons are reflected off the surface of the specimen. 14 Chapter 2 - Membranes and cell organelles CELL MEMBRANES 15 Chapter 2 - Membranes and cell organelles The Cell Membrane The boundary of all living cells is the cell membrane. It controls entry of dissolved substances into and out of the cell. also known as the Plasma Membrane OR Liquid Lipid Bilayer Surrounds the cytoplasm of the cell Is partially (or semi) permeable The cell membrane is ultra thin (thickness <0.01 micrometers). A cell membrane contains both lipids and protein and carbohydrates . 16 Chapter 2 - Membranes and cell organelles The Cell Membrane Fig 2.4 – Fluid Mosaic Model p25 17 Chapter 2 - Membranes and cell organelles A phospholipid molecule This is a simple representation of a phospholipid. the yellow structure represents the hydrophillic or water loving section of the phospholipid. The blue tails that come off of the sphere represent the hydrophobic or water fearing end of the Phospholipid. Below 18 Chapter 2 - Cells: Structure & Function If you mix phospholipids in water they will form these double layered structures. The hydrophillic ends will be in contact with water. The hydrophibic ends will face inwards touching each other 19 Chapter 2 - Cells: Structure & Function Membrane Proteins Floating around in the cell membrane are different kinds of proteins. These are generally globular proteins. They are not held in any fixed pattern but instead float around in the phospholipid layer. Generally these proteins structurally fall into three catagories... 20 Chapter 2 - Cells: Structure & Function There are carrier proteins that regulate transport and diffusion Marker proteins that identify the cell to other cells And receptor proteins that allow the cell to receive instructions 21 Chapter 2 - Cells: Structure & Function & Embedded Cholesterol Steroids are sometimes a component of cell membranes in the form of cholesterol. When it is present it increases the fluidity of the membrane. Not all membranes contain cholesterol. Q. In what kinds of environment would cholesterol be a vital membrane commponent? 22 Chapter 2 - Cells: Structure & Function Role of Cell Membranes 1. Identification 2. Communication 3. Regulation of movement of substances into/ out of cell 23 Chapter 2 - Membranes and cell organelles 1. Recognising Self or Non-self (also known as protein markers) On its outer surface, a plasma membrane has substances, often called Antigens (or MHC Markers) that identify the cell as belonging to one particular organism. Usually consist of proteins mixed with carbohydrates 24 Chapter 2 - Membranes and cell organelles 2. Communication Between Cells: Receptor Proteins These proteins are used in intercellular communication. In this animation you can see the a hormone binding to the receptor. This causes the receptor protein release a signal to perform some action. 25 Chapter 2 - Cells: Structure & Function 3. Control Movement In and Out of Cells In order to survive, cells need to take in and expel substances. Cells generally let in particular dissolved substance. It is therefore said to be partially permeable. Dissolved substances that pass across the cell membrane, does so by two processes – Diffusion & Active Transport. 26 Chapter 2 - Cells: Structure & Function TYPES OF MOVEMENT INTO & OUT OF CELLS PASSIVE (Without energy) a. b. c. 27 Diffusion Osmosis Facilitated diffusion 1. Channel mediated 2. Carrier Mediated ACTIVE (With energy – ATP) D. E. Active Transport with– 1. Carrier proteins 2. Ion pumps Active Transport with 1. Endocytosis 2. Exocytosis: a.Phagocytosis/ b.Pinocytosis Chapter 2 - Cells: Structure & Function Passive Transport a. – Diffusion 28 Diffusion is the net movement of a substance (solution), from a region of high concentration to a region of low concentration. Diffusion does not require energy. Net: means overall movement (because movement does continue both ways!) Chapter 2 - Cells: Structure & Function b. Passive Transport - Osmosis One special case of diffusion is known as osmosis. Osmosis is the movement of water molecules from an area of low solute (high water) concentration to an area of high solute (low water) concentration. 29 Chapter 2 - Cells: Structure & Function c. Facilitated Diffusion Solid particles (ie molecules) and those that cannot enter via the lipid layer, enter the cell through a specific carrier protein in the membrane. This is known as facilitated diffusion. Fig 2.9a – Facilitated diffusion Facilitated diffusion travels from an area of high concentration to an area of low concentration. Two forms of passive facilitated diffusion: Channel Mediated & Carrier Mediated (see page 41) 30 Chapter 2 - Cells: Structure & Function Examples of Facilitated Diffusion cont… 3a. Channel Mediated Passive Transport Channel proteins extend through the bilipid layer. They form a pore through the membrane that can move molecules in several ways. In some cases the channel proteins simply act as a passive pore. Molecules will randomly move through the opening in a process called diffusion. This requires no energy, molecules move from an area of high concentration to an area of low concentration nd is known as passive transport Direction: with the concentration gradient 31 Chapter 2 - Cells: Structure & Function Examples of Facilitated Diffusion cont.. 3b. Carrier Mediated Passive Transport out In this case a molecule that is moving naturally into the cell through diffusion is used to drag another molecule into the cell. This hitching of a ride doesn’t use energy. The molecule is facilitated by one that is moving from a high concentration to a low concentration. in Protein channel Phospholipid 32 Chapter 2 - Cells: Structure & Function ACTIVE TRANSPORT Active transport is the net movement of dissolved substances into or out of the cell against a concentration gradient (opposite to facilitated diffusion). Active transport requires energy (ATP) to perform. Active transport enables cells to maintain stable internal conditions in spite of extreme external surroundings. 33 Chapter 2 - Cells: Structure & Function EXAMPLES OF ACTIVE TRANSPORT Cont… Bulk Transport – Cytosis into & out of cells MOVEMENT INTO CELL MOVEMENT OUT OF CELL Endocytosis Exocytosis i. Phagocytosis “cell eating” ii. Pinocytosis “cell drinking” 34 Chapter 2 - Cells: Structure & Function Bulk Transport – into cells When bulk material is taken into a cell as a solid, the process is termed Phagocytosis’. When bulk fluid is taken into a cell as fluid, the process is termed ‘Pinocytosis’. 35 Chapter 2 - Cells: Structure & Function Bulk Transport - Endocytosis Unicellular protists (Amoeba) obtain their energy in the form of relatively large food particles that they engulf. The food gathers at the lipid layer of the membrane and is drawn in and enclosed within a sac where the food is digested. This process of bulk material into a cell is known as endocytosis. 36 Chapter 2 - Cells: Structure & Function Bulk Transport - Endocytosis Fig 2.11a – Example of Endocytosis 37 Chapter 2 - Cells: Structure & Function Bulk Transport - Endocytosis Fig 2.11b – Example of Endocytosis 38 Chapter 2 - Cells: Structure & Function Bulk Transport - Exocytosis Bulk transport out of cells (export or waste material) is called exocytosis. In exocytosis, vesicles formed within a cell fuse with the plasma membrane before the contents of the vesicles are released from the cell. 39 Chapter 2 - Cells: Structure & Function Bulk Transport - Exocytosis 40 Fig 2.13 – Exocytosis Chapter 2 - Cells: Structure & Function Cell Organelles Cell Walls The cell membrane forms the exterior of animal cells. However, in plants, fungi and bacteria, a rigid cell wall lies outside the cell membrane. The cell wall varies in composition between plants, fungi and bacteria. 41 Chapter 2 - Cells: Structure & Function Cell Walls 42 Chapter 2 - Cells: Structure & Function Structure of Cells Wall Plants have rigid cell walls. the primary cell wall of adjacent cells are held together tightly by a layer of pectin, a sticky carbohydrate (polysaccharide). Secondary cell walls are layed down (inside) on the cytosol side of the primary wall, causing quite a gap between two sides. 43 Chapter 2 - Membranes and cell organelles STRUCTURE OF PLANT CELL WALL 44 Chapter 2 - Cells: Structure & Function Nucleus The control centre of the cells of animals, plants, algae and fungi is the nucleus. forms a distinct spherical structure that is enclosed within a double membrane known as the nuclear envelope. Cells that have a membrane bound nucleus are called eukaryote cells. Some cells have more than one nucleus (WBC!); whilst 45others have none Chapter 2 - Cells: Structure & Function (mature RBC) Nucleus - function This organelle has two major functions: 1. it stores the cell's hereditary material, or DNA, and 2. it coordinates the cell's activities, which include growth, intermediary metabolism, protein synthesis, and reproduction (cell division). 46 Chapter 2 - Cells: Structure & Function The nucleus is of primary importance in the cell because it is the control center that oversees the metabolic functioning of the cell and ultimately determines the cell's characteristics. Within the nucleus, there are masses of threads called chromatin, which is indistinct in the nondividing cell, but it condenses to chromosomes at the time of cell division. This is where the DNA resides. The nucleolus is the specialized part of chromatin in which the ribosomal RNA (rRNA), is produced. 47 Chapter 2 - Cells: Structure & Function Nucleolus The nucleus also contains one or more large inclusions known an nucleoli which are composed of ribonucleic acid (RNA). 48 Chapter 2 - Cells: Structure & Function Mitochondrion Note: Sketch diagrams rod-shaped organelles that can be considered the power generators of the cell, converting oxygen and nutrients into adenosine triphosphate (ATP). Contains DNA 49 Chapter 2 - Cells: Structure & Function Ribosomes 50 All living cells contain ribosomes, They are tiny organelles composed of approximately 60 percent RNA and 40 percent protein. They are not membrane bound In eukaryotes, ribosomes are made of four strands of RNA. In prokaryotes, they consist of three strands of RNA Chapter 2 - Cells: Structure & Function Ribosomes (don’t copy) Ribosomes are mainly found bound to the endoplasmic reticulum and the nuclear envelope, as well as freely scattered throughout the cytoplasm, depending upon whether the cell is plant, animal, or bacteria. The organelles serve as the protein production machinery for the cell and are consequently most abundant in cells that are active in protein synthesis, such as pancreas and brain cells. Some of the proteins synthesized by ribosomes are for the cell's own internal use, especially those that are produced by free ribosomes. Many of the proteins produced by bound ribosomes, however, are transported outside of the cell. 51 Chapter 2 - Cells: Structure & Function Endoplasmic Reticulum The endoplasmic reticulum is a network of sacs that manufactures, processes, and transports chemical compounds for use inside and outside of the cell. It is connected to the double-layered nuclear envelope, providing a pipeline between the nucleus and the cytoplasm. 52 Chapter 2 - Cells: Structure & Function 53 Chapter 2 - Cells: Structure & Function Smooth ER A network of interconnected membranes forming channels within the cell. A site for synthesis and metabolism of lipids. Also contains enzymes for detoxifying chemicals including drugs and pesticides 54 Chapter 2 - Cells: Structure & Function Golgi Complex A series of stacked membranes. Vesicles (small membrane surrounded bags) carry materials from the RER to the Golgi apparatus. Vesicles move between the stacks while the proteins are "processed" to a mature form. Vesicles then carry newly formed membrane and secreted proteins to their final destinations including secretion (pinocytosis) or membrane localization. 55 Chapter 2 - Cells: Structure & Function Golgi Complex 56 Chapter 2 - Cells: Structure & Function Lysosomes A membrane bound organelle that is responsible for degrading (break down) proteins and membranes in the cell, and also helps degrade materials ingested by the cell. 57 Chapter 2 - Cells: Structure & Function Chloroplasts Surrounded by a double membrane, containing stacked thylakoid membranes. Responsible for photosynthesis, the trapping of light energy for the synthesis of sugars. Contains DNA, and like mitochondria is believed to have originated as a captured bacterium. 58 Chapter 2 - Cells: Structure & Function 59 Chapter 2 - Cells: Structure & Function VACUOLES 60 Chapter 2 - Cells: Structure & Function Functions of vacuoles Removing unwanted structural debris Isolating materials that might be harmful to the cell Containing waste products Maintaining internal hydrostatic pressure (turgor pressure) within the cell Maintaining an acidic internal pH Containing small molecules Exporting unwanted substances from the cell. Enabling the cell to change shape. Movement in some cells 61 Chapter 2 - Cells: Structure & Function CILIA & FLAGELLUM Cilia and flagellum are structures that aide cell movement Scanning electron micrograph of ciliate A sperms flagellum 62 Chapter 2 - Cells: Structure & Function Cytoskeleton • • • • 63 Each cell has an internal framework of protein microtubules & microfilaments. These supply the inner strength and support for the cell. They are also important in cell division. This supporting structure is called the Cytoskeleton. Chapter 2 - Cells: Structure & Function Connections between animal cells Although some cells like blood cells, are free to move as individuals around the body, most cells remain as a group. To assist this ‘ community’ of cells are three types of junctions (joins) including: Occluding junctions: simply where one cell comes into contact with another (no movement of material between them) Communicating junctions (gap junctuions): also known as gap junctions. Consist of protein lined pores between the membrane of adjacent cells. The proteins are aligned like a series of rods with a gap (pore) in the middle of them. This bridge between cells enables the passage of ions, sugars, amino acids, other small particles and even electrical signals between the two cells. (example: electrical impulse in the heart) 64 Anchoring Junctions (desmosomes): most common form of junction in epithelial cells (skin, uterus, lining cells!). Dense proteins protrude from the cytosol of one cell into the other to ‘anchor’ the cells together. Chapter 2 - Membranes and cell organelles Communicating Junctions right .. Anchoring junctions below 65 Chapter 2 - Membranes and cell organelles Connections between plant cells Plasmodesmata (singular: plasmodium) is the name given for the structure that joins plant cells. Because of the way in which cell walls are built, the gap or pore between two cells is continuos and lined with cell membrane. The structure that bridges the gap is continuos with smooth endoplamsic reticulum. 66 Chapter 2 - Membranes and cell organelles Cells in Multicellular organisms In a unicellular organism, one cell carries out all of the functions of life. In contrast, most cells in a multicellular organism are specialized to perform one or a few functions – more efficiently. Because of cell specialization, the cells of multicellular organisms depend on other cells in the organism for their survival. 67 Chapter 2 - Cells: Structure & Function Surface Area to Volume A few types of cells are large enough to be seen by the unaided eye. The human egg (ovum) is the largest cell in the body, and can (just) be seen without the aid of a microscope. Most cells are small for two main reasons: a). The cell’s nucleus can only control a certain volume of active cytoplasm. b). Cells are limited in size by their surface area to volume ratio. A group of small cells has a relatively larger surface area than a single large cell of the same volume. This is important because the nutrients, oxygen, and other materials a cell requires must enter through it surface. As a cell grows larger at some point its surface area becomes too small to allow these materials to enter the cell quickly enough to meet the cell's need. (= Fick’s Law – something you need to learn well). 68 Rate of diffusion α Surface Area x Concentration Difference Distance Chapter 2 - Cells: Structure & Function 69 Chapter 2 - Cells: Structure & Function Tissue, Organs and Organ Systems In most Multicellular Organisms, we find the following organization: Cellular Level: The smallest unit of life capable of carrying out all the functions of living things. Tissue Level: A group of cells that performs a specific function in an organism. Organ Level: Several different types of tissue that function together for a specific purpose. Organ System Level: Several organs working together to perform a function. The different organ systems in a multicellular organism interact to carry out the processes of life 70 Chapter 2 - Cells: Structure & Function 71 Chapter 2 - Cells: Structure & Function Chapter Revision 72 Chapter 2 - Membranes and cell organelles BioChallenge & Chapter Review 73 Chapter 2 - Membranes and cell organelles