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Evolution and Diversity, Biol 1010 Section C, Final Exam Fall 2009, Steven M. Thompson 1. Organisms that obtain energy by eating nutrients that make up other organisms are called: A. Autotrophs B. Heterotrophs C. Chemolithotrophs D. Producers E. Photosynthetic 2. Which of the following is not true about a hypothesis? A. It can be proven to be false B. It can be proven to be true C. It is a tentative explanation D. It is based on previous knowledge E. It must be testable to be useful 3. A theory differs from a hypothesis in that a theory: A. Has less supportive evidence than a hypothesis B. Is narrower in scope than a hypothesis C. Ties together many existing observations D. Has no predictive power E. Is just an educated guess 4. The entire collection of genes and all their alleles is an entire population is its: A. Genotype B. Gene pool C. Phenotype D. Dominant traits E. Recessive traits 5. An organism's phenotype: A. Is the organism’s observable properties B. Is impossible to ascertain without genetic testing C. Is the organism’s place and role in its environment D. Is never influenced by the organism’s environment E. Is completely independent of the organism’s genotype 6. Natural selection where one extreme phenotype is fittest and the environment selects against the others is called: A. Directive (a type of positive) selection B. Disruptive (a.k.a. diversifying, also a type of positive) selection C. Stabilizing (a.k.a. normalizing or purifying, and a type of negative) selection D. Artificial selection E. Convergent evolution 7. "Balanced polymorphism," also known as "heterozygote advantage" means that: A. Multiple alleles of a gene persist indefinitely in a population due to some selective advantage B. Many genes that affect the same trait persist indefinitely in a population due to some selective advantage C. Only the dominant allele exists for each trait in a population due to some selective advantage D. Only the recessive allele exists for each trait in a population due to some selective advantage E. Many traits persist in a population that are controlled by only a single allele 8. Alleles conferring red plumage to male cardinal birds are common because of: A. Sexual selection – red plumage is preferred by female cardinals in regards to choosing a mate B. Predation pressure – red plumage makes males less susceptible to predation C. Chance – it’s just the ‘luck of the draw’ and has nothing to do with selection D. What the male cardinal eats E. Human preference 1 9. The process by which new species originate: A. Is extinction B. Occurred only once in Earth's history C. Is germination D. Is speciation E. Occurred for millions of years but is no longer occurring 10. The type of reproductive isolation in which two populations live in the same habitat but remain isolated from one another due to one being active only during the daytime and the other only being active during the night is: A. Mechanical isolation B. Temporal isolation C. Gametic isolation D. Solitary confinement E. Post-zygotic isolation 11. Polyploidy, having three or more sets of chromosomes, is: A. Common in both plant and animal species B. Common in animal species C. Common in plant species D. Common in Bacteria E. Common in Archaea 12. The idea that evolution proceeds as long periods of stasis with relatively brief bursts of fast evolutionary change is: A. Uniformatarianism B. Punctuated equilibrium C. Catastrophism D. Gradualism E. Temporal equilibrium 13. The impact of a large meteorite, comet, or asteroid with Earth can cause mass extinctions by: A. Creating huge clouds of dust that block sunlight for many months, ala nuclear winter, killing much plant life B. Causing a great prolonged rise in the earth's temperature, ala extreme, long-term global warming C. Boiling the oceans, thereby cooking all the organisms in them D. Opening up vast new habitats for adaptive radiation to occur E. Never happening — this is an extremely unlikely situation 14. If similarities between two structures or sequences in different organisms reflect common ancestry, these structures or sequences are: A. Vestigeal B. Analogous C. Homologous D. Homeotic E. Systematic 15. If similarities between two structures or sequences in different organisms reflect independent, convergent evolution, these structures or sequences are: A. Vestigeal B. Analogous C. Homologous D. Homeotic E. Systematic 16. A group consisting of a common ancestor and all of its descendants is a: A. Species B. Genus C. Clade D. Phylum E. Order 2 17. Human cytochrome c and the cytochrome c of some other organisms were aligned. An evolutionary model was used to determine the following evolutionary distances, from human to: Rhesus monkey - 1%; Pigeon - 12%; Fruit fly - 24%; Yeast - 42%. Using this information, which of the following in not true: A. Humans are more closely related to Rhesus monkeys than to any of the other organisms compared B. Humans are more closely related to yeast than to fruit flies C. Humans are more closely related to pigeons than to yeast D. Humans are more closely related to pigeons than to fruit flies E. Humans are most distantly related to yeasts of all the organisms compared 18. On average most mutations in an organism's DNA neither help nor hurt the organism, nor it's ability to reproduce. This is known as: A. Positive natural selection B. Negative natural selection C. Artificial selection D. Neutral evolution E. Convergent evolution 19. A phylogenetic inference method that determines the optimal tree based on optimizing the minimum number of changes along all of its branches is called: A. Parsimony B. Distance (phenetics) C. Maximum Likelihood D. Bayesian inference E. A guess 20. A phylogenetic tree with only four tips (species, genes, etc), can have how many possible bifurcating, unrooted arrangements? A. One B. Two C. Three D. Four E. Five 21. Stanley Miller's first prebiotic simulation experiment showed that under the right conditions, Oparin's ancient reducing, ammonia and methane-rich atmosphere could allow for the formation of: A. Living cells B. Viruses C. DNA molecules D. Amino acids E. Lipids 22. Carl Woese named an ancient, self-replicating entity, perhaps the Last Universal Common Ancestor of all life (LUCA) or its ancestor, composed of RNA (and perhaps DNA), proteins and lipids a: A. Cell B. Molecule C. Progenote D. Archeon E. Domain 23. The "Cambrian explosion" refers to: A. The huge impact event that caused the mass extinction of the dinosaurs at the end of the Cretaceous B. The bombing of Hiroshima at the end of World War II C. The relatively fast appearance of all the major phyla of animals during the Cambrian D. The origination of life during the precambrian E. A human caused global warming 24. The three groups in the primate lineage are: A. Prosimians (e.g lemurs), simians (monkeys), and hominoids (apes) B. Prosimians (e.g lemurs), simians (monkeys), and gibbons C. Simians (monkeys), gibbons, and orangutans D. Gorillas, bonobos, and chimpanzees E. Chimpanzees, gorillas, and humans 3 25. Hominids (the Great Apes) in the human family tree do not include: A. The Australopithecus fossil group B. The Homo fossil group C. Gorillas D. Chimpanzees E. Baboons 26. Biofilms are organized communities of Bacteria and/or Archaea that: A. Protect each other and communicate through chemical signals with one another B. Are seldom found in nature C. Are easily killed with antibiotics D. Have no environmental or industrial relevance E. Are never medically relevant 27. Bacteria and/or Archaea can not live in: A. Ice B. High in the atmosphere in clouds C. Thermal vents at the bottom of the ocean D. Animal intestines E. They can live in all these places 28. A type of horizontal gene transfer in Bacteria and/or Archaea in which a cell receives genetic material, usually in the form of a plasmid, from another cell through sex pili is: A. Conjugation B. Duplication C. Replication D. Translation E. Fixation 29. Bacteria and Archaea are: A. All in the same kingdom of life, the Prokaryotes, sometimes called the Monera B. All basically the same, with little variety of metabolism or lifestyle C. A single phylogenetically cohesive group D. Multicellular organisms with nuclei E. Unicellular organisms without nuclei 30. Bacterial genomes consist of: A. Several discrete linear DNA chromosomes B. A single circular DNA chromosome and, perhaps, one or more smaller plasmids C. Several discrete linear RNA chromosomes D. A single circular RNA chromosome and, perhaps, one or more smaller plasmids E. Bacteria do not have a genome 31. The original organisms on earth capable of producing oxygen through photosynthesis were: A. Primitive moss and fern-like plants B. Cyanobacteria-like Bacteria C. Methane-producing Archaea D. Phytoplankton algae E. Viruses 32. The Endosymbiotic Theory asserts that mitochondria were originally: A. Archaeal thermophilic cells B. Eukaryotic protist cells C. Aerobic Proteobacterial cells D. Anaerobic Firmicutes Bacterial cells E. Photosynthetic Cyanobacterial cells 4 33. The Endosymbiotic Theory asserts that chloroplasts were originally: A. Archaeal thermophilic cells B. Eukaryotic protist cells C. Aerobic Proteobacterial cells D. Anaerobic Firmicutes Bacterial cells E. Photosynthetic Cyanobacterial cells 34. All Bacteria and Archaea: A. Lack a cell membrane B. Lack membrane-bound organelles C. Lack ribosomes D. Have nuclei E. Have identical metabolisms 35. Modern Bacterial and Archaeal taxonomic methodology greatly relies on: A. The molecular methods of sequence analysis, including ribosomal RNA and complete genomes B. The microscopic appearance of the organism C. The metabolic requirements of the organism D. The symptoms of the disease caused by the organism E. The inaccuracy of the methodology 36. Carl Woese: A. Was the first person to realize that Archaea were not Bacteria B. Used complete genomes in his original analysis C. Had his conclusions immediately accepted D. Never received any awards for his work E. Realized that ribosomal RNA was worthless for phylogenetics 37. Bacteria and/or Archaea in the human large intestine: A. Always cause disease B. Constitute an insignificant portion of our fecal material C. Constitute around half the weight of our fecal material D. Are only a few species E. Encourage the growth of more harmful species 38. Bacterial and Archaeal 16S ribosomal RNA molecules are: A. Worthless as a phylogenetic marker B. The original molecule Carl Woese used in his ground-breaking research C. A linear molecule used to transfer genetic information to the ribosome D. A circular molecule that often carries sex and antibiotic-resistance genes E. Entirely unique to Bacteria and Archaea and have no Eukaryotic homologue 39. According to most molecular phylogenetic studies, which of the following is not true: A. All Bacteria are a single clade, the Bacteria domain B. All Archaea are a single clade, the Archaea domain C. All Eukaryota are a single clade, the Eukaryota domain D. Bacteria are more closely related to Eukaryotes than Archaea are E. Archaea are more closely related to Eukaryotes than Bacteria are 40. An aquatic microbial mat: A. Has the same organismal composition throughout B. Has the same oxygen levels throughout C. Usually contains Cyanobacteria D. Is inconsequential to the environment E. Is a very rare occurence 41. All Archaea are: A. Extremophiles B. Methanogens C. Found in animal intestines D. Found in hydrothermal vents E. United by similar ribosomal RNA sequences and cellular biochemistry 5 42. Most of the Bacterial phyla (could be considered kingdoms) closest to the root of the “Tree of Life”: A. Live in very hot conditions B. Live in temperate conditions C. Live in very cold conditions D. Live in ultra salty conditions E. Have no temperature or salinity preference 43. The original source of the heat stable DNA polymerase (Taq) required for the polymerase chain reaction (PCR) was: A. An Asciomycetes Fungi named Penicillium B. A thermophilic Bacteria named Thermus aquaticus C. An Apicomplexan protist named Plasmodium D. A carnivorous plant named Pitcher Plant E. A Monotreme mammal named Echidna 44. Enteric Bacteria: A. All cause disease B. Are all aerobic C. Are all anaerobic D. Can never swap genes E. Live in animals’ large intestine 45. The very first cellular organism that evolved on the Earth must have been a(n): A. Eukaryote B. Bacteria or Archaea C. Protist D. Slime mold E. Virus 46. The exchange of genetic material between bacteria: A. Only occurs between the same species B. Always requires sex pili C. Is used in the laboratory for ‘genetic engineering’ D. Has never naturally occurred between Bacteria and Eukaryotes E. Involves fertilization 47. By far most Bacteria: A. Cause disease in humans B. Are essential to life on earth C. Are too small to see with anything but an electron microscope D. Live all by themselves rather than as a community with other types of life E. Came from outer space 48. The evolution of antibiotic resistance in Bacteria can occur if: A. You do not complete your entire antibiotic prescription regime B. Supplementing animal feeds with antibiotics is discontinued C. Viral infections are not treated with antibiotics D. All bacteria in your body are killed by antibiotics E. The natural genetic variability of Bacteria is eliminated 49. Nitrogen fixation by Rhizobium: A. Converts ammonia to nitrogen gas B. Occurs in legume plant root nodules C. Occurs in ruminant herbivores’ guts D. Has no effect on the environment E. Is an example of parasitism 50. Symbiotic Bacteria and Archaea in your body: A. Suppress pathogenic bacteria by competing for limited resources B. Have nothing to do with food digestion C. Have nothing to do with the production of vitamins D. Have nothing to do with the formation of blood vessels E. Always cause disease 6 51. Eukaryotes are organisms that: A. All have their primary genome contained within a membrane-bound nucleus B. Are all heterotropohic C. Are always multicellular D. Are all visible with the ‘naked’ eye. E. Can only reproduce within a host species 52. Protists (according to my working definition given in lecture): A. Are a monophyletic ‘kingdom’ of life B. Are primarily unicellular (though sometimes colonial) eukaryotes C. Do not have a nucleus D. Do not have membrane-bounded organelles E. Are all parasitic 53. The microscopic photosynthetic food that supports the base of the ocean's vast food webs is: A. Pytoplankton B. Coral C. Jellyfish D. Organic compounds released by thermal vents in the ocean floor E. Only composed of Archaea and Bacteria 54. Ornate silica cell walls are characteristic of a protist group called the: A. Euglenoids B. Dinoflagellates C. Ciliates D. Diatoms E. Slime molds 55. The engulfment of food particles by a cell is: A. Phagocytosis B. Chemotaxis C. Organotaxis D. Pseudopodia E. Cytokinesis 56. The malaria Apicomplexan protist, Plasmodium, is transmitted by: A. The bite of a mosquito B. The bite of a bat C. The bite of a dog D. The bite of a kissing bug E. Ingesting contaminated food or water 57. The organelle that contains chlorophyll and carries out photosynthesis in plants is the: A. Mitochondria B. Chloroplast C. Central vacuole D. Cell membrane E. Golgi body 58. The main groups of land plants (the Embryophytes) do not include the: A. Bryophytes B. Seedless vascular plants including the ferns C. Gymnosperms D. Angiosperms E. Green algae 7 59. Which of the following is not a characteristic of the conifers? A. Needlelike leaves B. Cones C. Flowers D. Scale-like leaves E. Most are referred to as "evergreens" 60. The two main phylogenetic groups that make up the angiosperms are: A. Mosses and club mosses B. Ginkgos and cycads C. Monocotyledons and Eudicotyledons D. Horsetails and ferns E. Conifers and gnetophytes 61. Flowers and fruits are unique to: A. Bryophytes B. Angiosperms C. Gymnosperms D. Conifers E. Cycads 62. In the ecosystems of the world fungi act primarily as: A. Decomposers B. Producers C. Primary consumers D. Secondary consumers E. Tertiary consumers 63. Yeasts are: A. Multi-celled autotrophs B. Single-celled autotrophs C. Multi-celled heterotrophs D. Single-celled heterotrophs E. None of the above are correct 64. In fungi a mass of aggregated hyphae that form visible strands and is often underground is called a: A. Conidia B. Gill C. Spore D. Mycelium E. Ascus 65. Leaf-cutter ants of South America and their fungal gardens are an example of: A. Parasitism B. Predation C. Mutualism D. Interspecific competition E. Commensalism 66. A dual organism that forms when a fungus harbors green algae is a: A. Lichen B. Gnetophyte C. Micorrhizae D. Cyanobacteria E. Club moss 67. If an animal is an invertebrate, this means that the animal: A. Has a backbone B. Has a complete digestive tract C. Does not have a backbone D. Does not have a complete digestive tract E. Does not have true tissues 8 68. Snails, oysters, clams, octopi and squids belong to the phylum: A. Cnidaria B. Porifera C. Platyhelminthes D. Mollusca E. Annelida 69. The largest phylum of animals, of which insects, crustaceans, spiders, and scorpions belong to, is the phylum: A. Cnidaria B. Arthropoda C. Echinodermata D. Annelida E. Mollusca 70. Amphioxus, a.k.a. a lancelet, has a notochord and is the closest relative of the vertebrates; it is an example of a(n): A. Tunicate B. Cephalochordate C. Hagfish D. Amphibian E. Reptile 71. Which of the following is not a cartilaginous fish, that is, within the group Chondrichthyes? A. Tuna B. Mako shark C. Sting Ray D. Barndoor Skate E. Hammerhead shark 72. Which of the following is not a ray-finned fish, that is, within the group Actinopterygii? A. Salmon B. Trout C. Lungfish D. Catfish E. Eels 73. The first four legged terrestrial vertebrates (to have evolved onto land) were: A. Reptiles B. Tortoises C. Monotremes D. Amphibians E. Marsupials 74. Birds, phylogenetically speaking, are actually a type of: A. Ectotherm B. Dinosaur C. Squamata D. Synapsid E. Anapsid 75. Artiodactyls (the even-toed hoofed mammals) closest extant relatives are: A. All extinct B. The Cetacea (the whales, porpoises, and dolphins) C. The Perrissodactyla (the odd-toed mammals) D. The Hyracoidea (the hyraxes) E. The Proboscidea (the elephants) 9 76. By far our most potent weapon in the fight against viruses is: A. Antibiotics B. Sulfa drugs C. Vaccinations D. Tamiflu E. Gene therapy 77. A group of organisms of one species occupying a geographical location at the same time such that they have the potential to interbreed is a(n): A. Community B. Ecosystem C. Flock D. Population E. Herd 78. The physical, geographic and climatic, location where members of a population live is termed its: A. Biome B. Range C. Habitat D. Community E. Ecosystem 79. All of the organisms together, regardless of species, in a given location or area is termed a: A. Community B. Peer group C. Flock D. Population E. Herd 80. A growth pattern where the number of new individuals is proportional to the size of the population at any given time: A. Is exponential (doubling) growth, and when plotted over time yields a J-shaped curve B. Is logistic growth (plateauing), and when plotted over time yields a S-shaped curve C. Is the carrying capacity of an ecosystem for a population D. Is a population experiencing extinction E. Doesn’t ever exist 81. A population growth curve that depicts the leveling off of a population in response to environmental resistance: A. Is exponential (doubling) growth, and when plotted over time yields a J-shaped curve B. Is logistic growth (plateauing), and when plotted over time yields a S-shaped curve C. Is the carrying capacity of an ecosystem for a population D. Is a population experiencing extinction E. Doesn’t ever exist 82. All the organisms plus the nonliving components of a defined area is a(n): A. Population B. Community C. Habitat D. Niche E. Ecosystem 83. A genetic change in one species that selects for a subsequent change in a different species is termed: A. Genetic dispersion B. Coevolution C. Gene dynamics D. Competitive exclusion E. Evolutionary dynamics 10 84. A relationship between different species in which one species lives in or on another is: A. Resource partitioning B. Coevolution C. Symbiosis D. Predation E. Niche sharing 85. A food chain is a series of organisms that: A. Share the same niche B. Successively eat one another C. Exhibit mutualism with each other D. Share the same energy source E. Succeed one another as a climax community develops 86. The "net primary productivity" is: A. The amount of energy available for consumers to eat B. The amount of energy used in metabolism by producers C. The amount of energy given off as heat by producers D. The total amount of energy trapped by the autotrophs of an ecosystem E. The amount of energy coming from the Sun 87. Biomagnification usually happens for chemicals that: A. Quickly degrade in the environment B. Are not readily degraded in the environment C. Dissolve in water D. Do not dissolve in fat E. Do not enter the food chain 88. Which of the following in not a way that carbon returns to the atmosphere: A. As carbon dioxide B. From plant respiration C. From animal respiration D. By the burning of fossil fuels E. By the formation of fossil fuels 89. Nitrogen-fixing bacteria convert N2 into _____________________. A. Ammonia B. Oxygen C. Water D. Carbon dioxide E. Methane 90. Producers in hydrothermal vent ecosystems: A. Use water as their source of energy B. Use sunlight as their source of energy C. Are corals D. Are tube worms E. Are chemolithotrophic Archaea and Bacteria 91. The rain shadow associated with mountains: A. Has no effect on local weather patterns B. Causes it to be darker on one side of a mountain than the other C. Has a wetter climate than the other side of the mountain D. Is on the upwind (windward) side E. Is on the downwind (leeward) side 92. Which of the following is not characteristic of a tropical rain forest biome? A. Nutrient rich soil B. Warm and wet climate C. A year-round growing season for plants D. A tremendous diversity of animal life E. They are positioned near the equator 11 93. Which of the following is not a characteristic of the polar tundra biome? A. High latitude B. Conifers C. Permafrost D. Mosses E. Short growing season for plants 94. Older lakes that are nutrient rich and have high productivity are termed: A. Eutrophic B. Oligotrophic C. Polytrophic D. Benthic E. Pelagic 95. The area where the fresh water of a river meets the salty ocean is a(n): A. Intertidal zone B. Estuary C. Continental shelf D. Pelagic zone E. Benthic zone 96. In the Planet Earth Jungle episode when the huge old tree fell and lots of plants quickly grew illustrates: A. Primary succession B. Coevolution C. Competition D. Symbiosis E. Biomagnification 97. MicroRNAs are: A. Usually encoded within exons B. Processed into transfer RNAs C. Important in the negative regulation of protein coding genes D. Important in the positive regulation of protein coding genes E. A part of the ribosome 98. In the Passionate Eye video on global warming where human causes are documented: A. Polar bears are seen to be thriving in warmer polar regions B. Low lying islands are under no threat of flooding C. Coral reefs are seen to be “bleaching” D. Glaciers are getting larger E. Hurricanes are getting less frequent and less severe 99. What did you fill in on the side of the computerized answer sheet? A. My name (last name first), the course and section number, and the date B. Nothing! C. Something illegible! D. Only my name! E. None of the above are correct. 100. What did you fill in on the very end of the computerized answer sheet: A. My VSU student ID, printed and bubbled in B. Nothing! C. The wrong VSU student ID! D. Only the printed number, no bubbles! E. None of the above are correct Have a great Holiday Break and thanks for taking my class. I hope you learned a lot! 12