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Supplementary Materials The model used in this article incorporates the mass distribution elements proposed by GuΜ nther and colleagues [13] into a phenomenological Hill-type muscle model. The symbols and parameters used by the model are listed in Table S1. To distribute the muscleβs mass throughout its tissue, the total muscle mass M is divided among N in-series point masses of equal mass m. Between each point mass is a force-producing contractile segment that contains an activation-dependent contractile element (CE) and a parallel elastic element (PEE). The number of segments is equivalent to one less than the number of point masses. Initially, each point mass is distributed evenly along the x-axis of this 1-dimensional model, such that the initial segment length is equal to the initial muscle length divided by the number of segments. The position of the first point mass is fixed throughout all simulations, and the last point mass is attached to an external load Fe that was varied for each simulation. (a) Forces in each contractile segment The normalized force of each contractile element πΉΜCE is the product of its normalized activation state πΜ, normalized active force-strain πΉΜa (πs ), and normalized force-strain-rate πΉΜ (πΜs ) characteristics, where: πΉΜCE = πΜπΉΜa (πs )πΉΜ (πΜs ) (S1) π πΉΜa (πs ) = π (π +1)π€ β1 β| s | π (S2) 1 π€ is the skewness, π is the roundness, π is the width of the active force-length relationship, and πs is the segment strain [S1]. Additionally: πΉΜ (πΜs ) = πΜ (1β s ) πΜ 0 , πΜ (1+ sΜ ) for πΜs < 0 (S3a) for πΜs β₯ 0 (S3b) ππ0 πΉΜ (πΜs ) = 1.5 β 0.5 πΜ (1+ s ) πΜ 0 7.56πΜ s (1β ) ππΜ 0 , where πΜs is the strain-rate of the segment, πΜ0 is the maximum unloaded strain-rate of the segment, and π is the curvature of the force-strain-rate relationship [S2]. Both πΜ0 and π vary depending on the fibre-type composition of the muscle. The normalized force of each parallel elastic element πΉΜPEE is due only to its normalized passive force-strain πΉΜπ (πs ) behaviour, where: πΉΜPEE = πΉΜπ (πs ) = π (π1 +π2(πs +1)) (S4) both c1 and c2 are constants derived from experimental data [S3]. The values of the constants used in equations S3-S4 can be found in Table S1. The force of each contractile segment πΉs is the sum of the normalized forces πΉΜCE and πΉΜPEE , scaled by the maximum isometric force of the muscle πΉ0 : πΉs = πΉ0 (πΉΜCE + πΉΜPEE ). (S5) (b) Equations of motion for the point masses In the current model, each point mass has position xn, and its acceleration is dependent on the forces applied to it on both its left and right sides: π₯π = 0 , π2 πΉs,π β πΉs,πβ1 = π β ππ‘ 2 (π₯π ) , for π=1 (S6a) for 1<π<π (S6b) 2 π2 πΉe β πΉs,π = π β ππ‘ 2 (π₯π ) , for π=π (S6c) where π is the point mass number, π is the total number of point masses, π‘ is time, and Fe is the external force that is applied to the distal end of the muscle on the right-hand point mass. The equations for whole system were determined by substituting equations S1-S5 into equations S6a-S6c, and the set of equations was solved for all point masses in the system. (c) Model scaling The base model had dimensions to represent the plantaris muscle in the rat (optimal muscle length L0 of 34 mm, cross-sectional area 29 mm2, density of 1060 kg m-3, and thus a mass of 1.05 g, maximum isometric stress 200 k Pa; [14]). This model was geometrically scaled to larger sizes, with the linear dimensions being scaled by a factor of 25, the forces by a factor of 252, and masses by a factor of 253. The largest muscle had a mass of 16.33 kg, which reasonably approximates the mass of an elephant leg muscle [15]. (d) Activation state The normalized activation constant πΜ, which varied between 0.2 and 1.0, represents the relative activation of the contractile elements within the muscle. This activation constant thus affects the balance between the contractile forces and the inertial forces within the muscle. The contractile forces scale with the square of the linear dimension, whereas the inertial forces scale with the cube of the linear 3 dimensions. Thus, the effect of the inertial forces would be expected to dominate at large muscle sizes, as well as at low activation levels. (e) Fibre-type properties Two distinct fibre-type variants were examined in the present model. When the model is designated as slow or fast, it is assumed that the muscle being modelled is composed of a homogeneous population of contractile elements. The maximum unloaded strain-rate of the contractile elements πΜ0 and the curvature of the forcestrain-rate relationship π for the slow and fast muscle were designated as -5 and -10 s-1, and 0.18 and 0.29, respectively [S4]. Both πΜ0 and π are held constant throughout each simulation. (f) Comparison to experimental data One of the purposes of this study was to test previous experimental findings [12] that the activation-dependent differences in the maximum shortening velocity of the rat plantaris could be explained by inertial effects, even when they resulted from contractions with different fibre-types active. In this current study each model was assumed to be of a single, homogeneous fibre-type: but the fibre-type differences influence only the active forces, and not the passive forces from each contractile segment. Thus this model can simulate situations [12] when a single fibre-type is activated, provided the intrinsic properties of that fibre-type are represented in the active force-strain-rate properties described in equations S3aS3b. 4 The rat plantaris consists of many muscle fibres that act in parallel, and is thus typical of mammalian muscle. Traditional Hill-type muscle models consider whole muscles to act as if they were scaled-up muscle fibres [6-9]. We have recently demonstrated that Hill-type models that have fast and slow contractile elements acting in parallel can result in improved force predictions over traditional models [S4-S5]. However, even in such formulations the length and thus the velocity of the fast and slow contractile elements that are in parallel are assumed to be the same. The current model represents the muscle as a scaled-up muscle fibre that is subdivided into contractile segments and point masses that are arranged in series. Each contractile segment can be considered to represent the action of a set of myofilaments or even muscle fibres acting in parallel, provided that they all have the same length that is set by the spacing between the adjacent point masses. Thus this model can represent whole muscles, even when they contain parallel fibres within the context of this simplified Hill-type model representation. However, inhomogeneity in fibre strains that may exist between parallel elements would require a more detailed modelling approach, such as using the finite-element method [e.g. S6-S10], however such models have not accounted for the inertial mass distribution to date. (g) Model output measurements The forces acting on and thus the accelerations of the point masses vary along the muscle. During contraction the right-hand masses (Fig. 1) experience greater accelerations and faster speeds than masses on the left, and this is 5 highlighted in Fig. S1. The overall muscle length L was the sum of all the segment lengths (Table S1), and the maximum velocity of the whole muscle was determined for each contraction. This velocity was expressed in terms of a strain-rate for the whole muscle πΜm to aid in the comparison between different muscle scales. The maximum strain-rate for the muscle was determined for each muscle size, activation level and fibre-type and this maximum strain-rate was calculated for: (I) the first set of simulations that started with the segments at their optimal lengths to give πΜmax,I ; and (II) for the second set of simulations that started with stretched segments and that achieved maximum velocities when the whole muscle was at its optimal length to give πΜmax,II . (h) Neglected forces and model assumptions In order to isolate the effects of the inertial mass on the contractile performance of whole muscles possible internal forces within the muscle, other than those described in equations S1-S6c, have been neglected. Similar to previous approaches [9], this model has treated the whole muscle as a scaled-up muscle fibre and as such ignored the effects of inhomogeneity in tissue strains and material properties that may occur in parallel across the muscle, and also the effect of muscle architecture. Thus forces that may occur between parallel fibres such as drag or friction due to movement of fibres relative to surrounding tissue, changes in fibre pennation angle, heterogeneous fibre-type populations and compartmentalization of activities are not considered. Series elasticity, such as that arising from the tendon, and the effects of time-varying activation are also ignored. Nonetheless, this simple 6 representation of the muscle as a series of point masses separating the contractile segments is sufficient to capture the salient features of sub-maximal activation of different fibre-types in a whole muscle [12], and predicts a substantial effect of muscle size on the contraction speed of the muscle. Supplementary Material References S1. Otten E. 1985. The jaw mechanism during growth of a generalized Haplochromis species: H. elegans Trewavas 1933 (Pisces, Cichlidae). Neth. J. Zool. 33, 55-98. (doi:10.1163/002829683X00048) S2. Hodson-Tole EF, Wakeling JM. 2010. The influence of strain and activation on the locomotor function of rat ankle extensor muscles. J. Exp. Biol. 213, 318 β 330. (doi:10.1242/jeb.031872) S3. Lee SS, de Boef Miara M, Arnold AS, Biewener AA, Wakeling JM. 2011 EMG analysis tuned for determining the timing and level of activation in different motor units. J. Electromyogr. Kines. 21, 557 β 565. (doi:10.1016/j.jelekin.2011.04.003) S4. Wakeling JM, Lee SSM, Arnold AS, de Boef Miara M, Biewener AA. 2012 A muscleβs force depends on the recruitment patterns of its fibres. Ann. Biomed. Eng. 40, 1708 β 1720. (doi:10.1007/s10439-012-0531-6) S5. Lee SSM, Arnold AS, de Boef Miara M, Biewener AA Wakeling JM. 2013 Accuracy of gastrocnemius forces in walking and running goats predicted by one-element and two-element Hill-type models. J. Biomech. 46, 2288 β 2295. (doi:10.1016/j.jbiomech.2013.06.001) 7 S6. Bol M, Reese S. 2008 Micromechanical modelling of skeletal muscles based on the finite element method. Comp. Meth. Biomech. Biomed. Eng. 11, 489 β 504. (doi:10.1080/10255840701771750) S7. Yucesoy CA, Koopman BH, Huijing PA, Grootenboer HJ. 2002 Three- dimensional finite element modeling of skeletal muscle using a two-domain approach: linked fiber-matrix mesh model. J. Biomech. 35, 1253 β 1262, 2002. (doi:10.1016/S0021-9290(02)00069-6) S8. Blemker SS, Pinsky PM, Delp SL. 2005 A 3D model of muscle reveals the causes of nonuniform strains in the biceps brachii. J. Biomech. 38, 657 β 665. (doi:10.1016/j.jbiomech.2004.04.009) S9. Rahemi H, Nigam N, Wakeling JM. 2014 Regionalizing muscle activity causes changes to the magnitude and direction of the force from whole muscles. Frontiers Physiol. 5, 298. (doi:10.3389/fphys.2014.00298) S10. Yucesoy CA, Koopman BH, Baan GC, Grootenboer HJ, Huijing PA. 2003 Extramuscular myofascial force transmission: experiments and finite element modeling. Arch. Physiol. Biochem. 111, 377 β 388. (doi:10.3109/13813450312331337630) 8 Table S1. Model parameters. Parameter Definition Description N Total number of point masses n Point mass number M Muscle mass m = π π Mass of each point mass x Position t Time ls Segment length l0 Optimal segment length πs πΜs = πs β π0 π0 Segment strain = π (π ) ππ‘ s Strain-rate of segment πΜ0 Maximum unloaded strain-rate of contractile element L Muscle length L0 πΜm = (π β 1)π0 = π πΏ β πΏ0 ( ) ππ‘ πΏ0 Optimal muscle length Strain-rate of muscle πΜmax,I Maximum strain-rate of muscle for simulations I πΜmax,II Maximum strain-rate of muscle for simulations II πΉΜCE Normalized, active force of contractile element within segment πΉΜPEE Normalized, passive force from parallel elastic element within segment Fs,n Force of segment n 9 F0 Maximum isometric force of segment Fe External force applied to point mass n=N πΜ Normalized activation (0-1) w = 0.6 Skewness of active force-strain relationship r = 2.3 Roundness of active force-strain relationship s = 0.3 Width of active force-strain relationship k Curvature of force-strain rate relationship c1 = -13.816 Constant of passive force-strain relationship c2 = 9.210 Constant of passive force-strain relationship Figure S1. Displacement (A), velocity (B) and acceleration (C) of point masses as a function of time within a single model for N=16. The simulation shown is for a fast muscle with total mass of 1.05 g contracting at 20% activation against an isotonic external force of 0.01 Fe. The motion of the last point mass n=N is displayed as a dashed line. 10