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The Bacteria Phylogenetic tree of the major lineages of Bacteria based on 16S ribosomal RNA Sequence comparisons The Purple Bacteria, also called Proteobacteria is the largest and most physiological diverse of all bacteria Bacteria Purple and Green (Anoxygenic Phototrophic Bacteria) Cyanobacteria Prochlorophytes Chemolithotrophs: Nitrifying Bacteria Chemolithotrophs: Sulfur- and Iron-Oxidizing Bacteria Chemolithotrophs: Hydrogen-Oxidizing Bacteria Methanotrophs and Methylotrophs Sulfate and Sulfur-Reducing Bacteria Homoacetogenic Bacteria Budding and Appendaged (Prosthecate) Bacteria Spirilla Spirochetes Gliding Bacteria Sheathed Bacteria Bacteria Pseudomonads Free-Living Aerobic Nitrogen-Fixing Bacteria Acetic Acid Bacteria Zymomonas and Chromobacterium Vibrio and Related Genera Facultatively Aerobic Gram-Negative Rods Neisseria and other Gram-Negative Cocci Rickettsias Clamydias Gram-Positive Bacteria: Cocci Lactic Acid Bacteria Endospore-Forming Gram-Positive Rods and Cocci Mycoplasmas High GC Gram-Positive Bacteria: “Actinomycetes” Coryneform Bacteria Propionic Acid Bacteria Mycobacteria Filamentoud Actinomycetes Sulfate- and Sulfur-Reducing Bacteria Representative Sulfate-reducing and sulfur-reducing bacteria Most are Delta Purple Bacteria Desulfovibrio desulfuricans Desulfonema limicola Desulfosarcina variabilis Desulfobacter postgatei Desulfobulbus propionicus Sulfur-reducing bacteria Desulfuromonas acetoxidans Sulfate-Reducing Bacteria Strict anaerobes, Divided into two broad physiological subgroups: Genera in Group I (Desulfovibrio, Desulfomonas, Desulfotomaculum, Desulfobulbus) • utilize lactate, pyruvate, ethanol, or certain fatty acids as carbon and energy sources, reducing sulfate to hydrogen sulfide Genera in Group II (Desulfococcus, Desulfosarcina, Desulfonema, Desulfonema) • specialize in the oxidation of fatty acids, particularly acetate, reducing sulfate to sulfide Growth and reduction of sulfate by Desulfotomaculum in certain canned foods leads to a type of spoilage called sulfide stinker, Habitants of anoxic aquatic and terrestrial environments Sulfur-Reducing Bacteria Able to reduce elemental sulfur to sulfide Unable to reduce sulfate to sulfide Obligate anaerobes Utilize only sulfur as an electron acceptor Also referred to as dissimilatory sulfurreducing bacteria Members of the genus Desulfuromonas can grow anaerobically by coupling the oxidation of substrates such as acetate to ethanol to the reduction of elemental sulfur to hydrogen sulfide Homoacetogenic Bacteria Obligate anaerobes Gram-positive CO2 as a terminal electron acceptor Acetate as the sole product of anaerobic respiration Acetyl-CoA pathway convert CO2 to acetate Typical species: Acetobacterium woodii and Clostridium aceticum Homoacetogenic Bacteria Mechanism of autotrophy in homoacetogenic, sulfate-reducing and methanogenic bacteria Reactions of the Acetyl-CoA Pathway Budding and Appendaged (Prosthecate) Bacteria Asticcacaulis biprosthecum Ancalomicrobium adetum Ancalochloris perfilievii Stella Budding and Appendaged (Prosthecate) Bacteria Contain various kinds of cytoplasmic extrusions: Stalk Hyphae Appendages These kinds of extrusions, which are smaller in diameter than mature cell, contain cytoplasma, and are bounded by the cell wall, are called prosthecae (singular prostheca) Unequal cell growth, such as polar growth Majority is purple bacteria except Planctomyces and Pirella which are unusual as their cell walls consist mainly of protein Most are aquatic, many live attach to surfaces using prosthecae A stalk is usually a prostheca except in Planctomyces Budding and Appendaged (Prosthecate) Bacteria Contrast between cell division in conventional bacteria and in budding and stalked bacteria Budding and Appendaged (Prosthecate) Bacteria A Caulobacter rosette. The five cells are attached by their stalks (prosthecae) Budding and Appendaged (Prosthecate) Bacteria Stages in the Hyphomicrobium cell cycle Budding and Appendaged (Prosthecate) Bacteria Physiology and Ecology Hyphomicrobium is a methylotrophic bacteria, widespread in freshwater, marine and terrestrial habitates. Photomicrographs of cells of Hyphomicrobium Spirillum volutans Spirilla Intestinal spirillum Spirillum volutans Spirosoma linguale Purple bacteria Gram-negative The genus Spirillum includes only S. volutans Spirillum volutans is a large bacteria, microaerobic Azospirillum lipoferum is a nitrogen-fixing organism. It can form a loose symbiotic relationship with tropical grasses and grain crops Aquaspirillum magnetotacticum has magnetotaxis ability Spirilla Auqasirillum magnetotacticum Aquaspirillum magnetotacticum contains particles of Fe3O4 (magnetite) called magnetosomes arranged in a chain Spirilla: Bdellovibrio Bdellovibrio bacteriovorus Spirilla: Bdellovibrio Preying on other bacteria Attack and develop intraperiplasmically A wide variety of gram-negative bacteria can be attacked by a single Bdellovibrio species Gram-positive cells are not attacked Obligate aerobe, purple bacteria (delta group) Spirilla: Bdellovibrio bacteriovorus Developmental Cycle Spirochetes Typically slender, flexuous, helical in shape, often rather long Axial fibrils or axial filaments are attached to the cell poles and wrapped around the coiled protoplasmic cylinder. Both the axial fibrils and the protoplasmic cylinder are surrounded by a three-layered membrane called the outer sheath or outer cell envelope Treponema pallidum causes syphilis diseases Spirochaeta stenostrepta Spirochaeta plicatilis Spirochetes Arrangement of the protoplasmic cylinder, axial fibrils, and external sheath The manner in which the rotation of the rigid axial fibril can generate rotation. Spirochaeta zuelzerae Spirochetes: Classification Six genera (based on habitat, pathogenicity, and morphological, physiological characteristics): Spirochaeta Cristispira Treponema (Host in human, causes sexual disease syphilis) Leptospira (L. Interrogans causes nephritis and jaundice) Leptonema Borrelia (B. recurrentis causes relapsing fever) Cristispira Spirochetes Morphology of Treponema saccharophilum Treponema saccharophilum Gliding Bacteria No flagella but can move when in contact with surfaces Gram-negative, purple bacteria, some are Bacteroides-Flavobacterium Myxobacteria can form multicellular structures called fruiting bodies Beggiatoa Filamentou sulfur-oxidizing bacteria in a small stream Thioploca Sulfur-oxidizing bacteria Gliding Bacteria: Leucothrix Chemoorganotrophic, requires both H2S and an organic compounds for growth Form gonidia under unfavorable conditions May aggregate to form rosette when gonidia have high concentration Leucothrix mucor Gliding Bacteria: Fruiting Myxobacteria Myxococcus fulvus Myxococcus stipitatus Exhibit the most complex behavioral patterns and life cycles of all known prokaryotes Mellitangium erectum Stigmatella aurantiaca Chondromyces crocatus Gliding Bacteria: Fruiting Myxobacterium Have rather large chromosome size Rely on lysis of other bacteria for nutritions Myxospores are more resistant to drying, sonic vibration, UV and heat. Usually colored by carotenoid pigments Gliding myxobacterium Stigmatella aurantiaca Gliding Bacteria Gliding Bacteria Myxobacteria have distinct growth morphology Myxococcus xanthus on agar Myxococcus fulvus slime tracks on agar Fruiting body of stigmatella aurantiaca Gliding Bacteria Fruiting body formation in Chondromyces crocatus Early stage Stalk formation Three stages in head formation Mature fruiting bodies Sheathed Bacteria Filamentous organisms with a unique life cycle involving formation of flagellated swarmer cells within a long tube or sheath Under unfavorable conditions, the swarmer cells move out and become dispersed to new environments, leaving behind the empty sheath Active growth stage Sphaerotilus natans Swarmer cell Swarmer cells leaving the sheath Pseudomonads Purple bacteria (Proteobacteria), gram-negative Polar flagella, aerobic, grow at neutral pH mesophilically Chemoorganotrophic, never show a fermentative metabolism P. aeruginosa is opportunistic pathogen, some are plant pathogens Pseudomonas have broad substrate utilization, some produce polyhydroxybutyrate and some synthesize mediumchain-length polyhydroxyalkanoates, have been studied in our lab The Entner-Doudoroff pathway, the major means of glucose catabolism in pseudomonads Free-Living Aerobic Nitrogen-Fixing Bacteria Large, gram-negative, obligately aerobic rods, capable of fixing N2 nonsymbiotically Azotobacter has the highest respiratory rate of any living organism (purple bacteria) Azotobacter cells are very large, almost the size of yeasts, produce cysts Cysts Azotobacter cysts have low endogenous respiration and are resistant to desiccation, mechanical disintegration, and UV as well as ionizing radiation however, they are not especially heat-resistant Vegatative cells of Azotobacter vinelandii Free-Living Aerobic Nitrogen-Fixing Bacteria Major genera: Azotobacter, Azomonas, Azospirillum and Beijerinckia, Derxia Derxia gummosa encased in slime Colonies of Beijerinckia species growing on a carbohydrate-containing medium Free-Living Aerobic Nitrogen-Fixing Bacteria Acid-tolerant, free-living N2-fixing Bacteria Derxia gummosa Beijerinckia indica PHB Acid-tolerant, free-living N2-fixing bacteria Acetic Acid Bacteria Purple bacteria, gram-negative, aerobic, motile rods, tolerance to low pH Carry out incomplete oxidation of alcohols, leading to the accumulation of organic acids as end products With ethanol as a substrate, acetic acid is produced Classified as Gluconobacter Can carry out incomplete oxidation of higher alcohol and sugars: Glucose Gluconic acid Galactose Galactonic acid Arabinose Arabonic acid Sorbitol Sorbose Ascobic acid Acetobacter aceti on calcium carbonate agar containing ethanol as energy source. The clearing around the colonies due to the dissolution of calcium carbonate by the acetic acid produced by the bacteria Zymomonas and Chromobacterium Facultatively aerobic gram-negative rods, beta purple bacteria Chromobacterium violaceum produces a purple pigment violacein, a water-insoluble pigment that has antibiotic properties and is produced only from tryptophan Zymomonas carries out fermentation of sugar to ethanol, used in beverage industry. Pigment violacein produced by various species of the genus Chromobacterium A large colony of Chromobacterium violaceum growing among other colonies on an agar plate Vibrio and Related Genera Gram-negative, facultatively aerobic rods and curved rods that possess a fermentative metabolism Most are aquatic. The Group contains Vibrio, Aeromonas, Photobacterium and Plesiomonas Some can emit light (luciferase luciferase), these are associated with fish.