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Health Policy Advisory Committee on Technology Technology Brief BreastNext™: a 14-gene sequencing panel for the diagnosis of hereditary breast/ovarian cancer May 2013 © State of Queensland (Queensland Health) 2013 This work is licensed under a Creative Commons Attribution Non-Commercial No Derivatives 2.5 Australia licence. In essence, you are free to copy and communicate the work in its current form for non-commercial purposes, as long as you attribute the authors and abide by the licence terms. You may not alter or adapt the work in any way. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/2.5/au/. For further information, contact the HealthPACT Secretariat at: HealthPACT Secretariat c/o Clinical Access and Redesign Unit, Health Service and Clinical Innovation Division Department of Health, Queensland Lobby 2, Level 2, Citilink Business Centre 153 Campbell Street, Bowen Hills QLD 4006 Postal Address: GPO Box 48, Brisbane Qld 4001 Email: [email protected] Telephone: +61 7 3131 6969 For permissions beyond the scope of this licence contact: Intellectual Property Officer, Queensland Health, GPO Box 48, Brisbane Qld 4001, email [email protected], phone (07) 3234 1479. Electronic copies can be obtained from: http://www.health.qld.gov.au/healthpact DISCLAIMER: This brief is published with the intention of providing information of interest. It is based on information available at the time of research and cannot be expected to cover any developments arising from subsequent improvements to health technologies. This brief is based on a limited literature search and is not a definitive statement on the safety, effectiveness or costeffectiveness of the health technology covered. The State of Queensland acting through Queensland Health (“Queensland Health”) does not guarantee the accuracy, currency or completeness of the information in this brief. Information may contain or summarise the views of others, and not necessarily reflect the views of Queensland Health. This brief is not intended to be used as medical advice and it is not intended to be used to diagnose, treat, cure or prevent any disease, nor should it be used for therapeutic purposes or as a substitute for a health professional's advice. It must not be relied upon without verification from authoritative sources. Queensland Health does not accept any liability, including for any injury, loss or damage, incurred by use of or reliance on the information. This brief was commissioned by Queensland Health, in its role as the Secretariat of the Health Policy Advisory Committee on Technology (HealthPACT). The production of this brief was overseen by HealthPACT. HealthPACT comprises representatives from health departments in all States and Territories, the Australian and New Zealand governments and MSAC. It is a sub-committee of the Australian Health Ministers’ Advisory Council (AHMAC), reporting to AHMAC’s Hospitals Principal Committee (HPC). AHMAC supports HealthPACT through funding. This brief was prepared by Linda Mundy from the HealthPACT Secretariat. Technology, Company and Licensing Register ID WP152 Technology name BreastNext™: gene sequencing panel for the diagnosis of hereditary breast/ovarian cancer Patient indication For use in women with a genetic predisposition to breast and/or ovarian cancer who have tested negative to BRCA1 and BRCA2 Description of the technology BreastNext™ is a 14-gene sequencing panel intended for use in individuals who are considered to have a genetic predisposition to developing breast cancer due despite testing negative to BRCA1 and BRCA2. Individuals would be considered to be at an increased risk of breast cancer if they have a diagnosis of multiple primary breast cancers or bilateral cancer or male breast cancer, a diagnosis of breast cancer at a young age (<50 years), and/or three or more close relatives with a diagnosis of breast cancer. The test uses next-generation sequencing to detect the presence of mutations in the 14 genes listed in Table 1, which may indicate an increased risk of breast cancer. The breast cancer risk of mutations associated with the genes in the BreastNext™ panel is described in Figure 1. Ambry Genetics Corporation provide two other panels, OvaNext™ and CancerNext™, that test for mutations in the same genes as BreastNext™, in addition to several other genes.1 Many of the genes included in BreastNext™ are not just associated with breast cancer (Table 1) and therefore a mutation in one of these genes may indicate an elevated risk of a number of different cancers, making a specific management and surveillance strategy difficult. Figure 1 Breast cancer risk versus the mutation frequency of the genes in the general 2 population (composition not stated) BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 1 Table 1 Genes Genes included in various hereditary cancer panels provided by Ambry Genetics Cancer site associated ATM Ovaries, breast, pancreas BARD1 Ovaries, breast BRIP1 Ovaries, breast CDH1 Breast, gastric, colorectal CHEK2 Ovaries, breast, colorectal, uterine Ovaries, breast MRE11A MUTYH NBN Breast, duodenum, colorectal Ovaries, breast PALB2 Ovaries, breast, pancreas PTEN Breast, thyroid, endometrial, colorectal, kidney RAD50 Ovaries, breast RAD51C Ovaries, breast STK11 Ovaries, breast, pancreas, duodenum, colorectal Tp53 Breast, colorectal, brain BreastNext OvaNext CancerNext • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • • MLH1 MSH2 MSH6 Ovaries, endometrial, colorectal, urinary tract, stomach, hepatobiliary tract EPCAM PMS2 APC BMPR1A SMAD4 1, 3 Stage of development in Australia Yet to emerge Established Experimental Established but changed indication or modification of technique Should be taken out of use Investigational Nearly established BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 2 Australian Therapeutic Goods Administration approval Yes ARTG number (s) No Not applicable Licensing, reimbursement and other approval BreastNext™ is not listed on the ARTG. As of 1 July 2010, the new TGA regulatory framework requires all new in vitro diagnostic medical devices (IVDs) to be listed on the Australian Register of Therapeutic Goods (ARTG). IVDs encompass pathology tests. BreastNext™ would be classified as a Class III IVD and as such be required to be registered on the ARTG, however IVDs developed “in-house” are only required to have approval and yearly validation from NATA1. Australian companies that collect samples to be sent to overseas companies for analysis do not have to be listed on the ARTG, however all equipment used to collect and transport samples need be registered (personal communication TGA). BreastNext™, as a laboratory-developed test, is not required to have Food and Drug Administration approval. In the United States, genetic testing may be conducted by clinical laboratories that are licensed and accredited under the US Clinical laboratory Improvement Act (CLIA approval) 4 Technology type Diagnostic Technology use Diagnostic Patient Indication and Setting Disease description and associated mortality and morbidity Breast cancer occurs when abnormal cells grow and multiply out of control. Breast tissue consists mainly of fat, glandular tissue (arranged in lobes), ducts and connective tissue (Figure 2). Breast cancer originates in the ducts of the breast or in the lobules. The most common histological type of breast cancer is invasive ductal carcinoma (70-80%). There are two types of non-invasive breast cancer: ductal (DCIS) and lobular (LCIS) in-situ carcinoma, which are confined within the terminal duct lobular unit and the adjacent ducts but have not invaded through the basement membrane. LCIS is usually not identified via a mammogram but is an incidental finding during biopsy. DCIS is usually diagnosed due to micro-calcifications appearing on mammograms. Invasive breast cancer poses the risk of having given rise to distant metastases that at some later time will threaten a woman’s life. 5 1 National Association of Testing Authorities, Australia BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 3 Figure 2 Anatomy of the breast Number of patients In Australia during 2008, the most commonly diagnosed cancer in females was breast cancer, with 13,567 cases at an age-standardised incidence rate (ASR) of new breast cancer cases 115 per 100,000. In addition, the leading cause of burden of disease from cancer in females during 2008 was breast cancer, representing a total of 28 per cent of the total cancer burden and four per cent of the total burden of disease in Australia, accounting for 61,300 DALYs.2 The majority of cases (69%) were diagnosed in women aged 40-69 years. The overall risk of being diagnosed with breast cancer in 2008 for a female before the age of 85 was one in eight, with a mean age at first diagnosis of approximately 60 years. In 2007, breast cancer was the second most common cancer causing death in Australian females, accounting for 2,680 deaths with an ASR of 22.1 per 100,000. On average, one in 37 Australian women will die from breast cancer before the age of 85 years.6 As in Australia, breast cancer was the most commonly diagnosed cancer in females in New Zealand during 2009, representing 28.4 per cent of all new cancer registrations in females. In that period the number of new breast cancer cases registered was 93 per 100,000 females, representing 2,759 women diagnosed with the disease. For the same time, breast cancer was the second most common cause of death, accounting for 16.3 per cent of female cancer deaths, representing. The number of deaths from breast cancer in the same year was 658 at an ASR of 19.9 per 100,000. Mortality rates are higher in Māori females (27.4) compared to non- Māori females (19.2).78 It is difficult to estimate the number of women who may be at a genetic predisposition to breast cancer, however it is thought that gene mutations account for 5-10 per cent of all 2 DALYs = disability affected life years BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 4 breast cancer.9 The mutation frequency rates for three of the most well characterised genes, BRCA1, BRCA2 and Tp53, are summarised in Table 2. Several of the genes included in the BreastNext™ panel are involved in DNA repair: CHEK2, ATM, BRIP1 and PALB2. These genes are associated with an estimated two-fold risk of breast cancer in women and have been shown by numerous studies to be rare in the population.10 Mutations in the PALB2 gene were identified in 10/923 (1.0%) individuals with familial breast cancer compared with 0/1,084 controls.11 Mutations in the CHEK2 gene occur with a frequency of approximately one per cent in healthy individuals but is present in 5.1 per cent of individuals with breast cancer from 718 families that do not carry mutations in BRCA1 or BRCA2. 12 Seal et al (2006) identified mutations in the BRIP1 gene in 9/1,212 (0.7%) individuals with breast cancer from BRCA1/BRCA2 mutation-negative families but in only 2/2,081 (0.1%) controls.13 Inherited mutations in the BRIP1 and PALB2 genes are associated with a 20-50 per cent lifetime risk of breast cancer.14 Mutations in the PALB2 gene are rare in Australian women but when present are associated with a high estimated risk of breast cancer (91%; 95% CI [44, 100]) to age 70 years. Screening for PALB2 in 871 unrelated individuals from high-risk breast and/or ovarian cancer families enrolled in the Familial Cancer Centre in Australia, identified eight women with the mutation, a rate of 0.92 per cent.15 Dite et al (2010) characterised the risk of developing cancer in relatives of women with early on-set breast cancer (<35 years).16 Of the 504 young women with breast cancer, only 41 carried a known BRCA 1 or BRCA2 mutation. Cancerspecific standardised incidence ratios (SIRs) were estimated for the 2,208 first-degree relatives of the women, by comparing the number of affected relatives with that expected. For relatives of carriers, the female breast cancer SIRs were 13.13 and 12.52 for BRCA1 and BRCA2, respectively. The ovarian cancer SIR was 12.38 for BRCA1 and the prostate cancer SIR was 18.55 for BRCA2. Relatives of the non-carriers had SIRs for female breast, prostate, lung, brain and urinary cancers of 4.03, 5.25, 7.73, 5.19 and 4.35, respectively. These results indicate that first-degree relatives of women with very early-onset breast cancer are at increased risk of cancers that is not explained by mutations in the BRCA1 and BRCA2 genes. Many studies have been published describing other possible causative genes that may be associated with breast cancer.10 Causative mutations may not be identified, however this does not exclude the possibility of a genetic predisposition. First-degree relatives who failed to have a mutation identified would still be considered to be at a 50 per cent risk of having an inherited mutation and would enter a surveillance programme, which may include screening by annual mammogram or MRI.17 BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 5 Table 2 Mutation frequency for genes associated with a genetic predisposition to cancer Mutation frequency Gene Major sites at risk Risk of cancer at age 75 years where a family specific mutation has been identified BreastOvaries 40-80% 10-60% Prostate Other sites with up to a 10% lifetime risk BRCA1 1:1,000 BRCA2 1:1,000 BreastOvaries 40-80% 10-40% Male breast, prostate, pancreas 1:10,000 Breast bone Soft tissue 50% <10-50% Brain, lung, adrenal gland p53 Speciality Women’ health, cancer Technology setting Specialist hospital 17 Impact Alternative and/or complementary technology Additive or complementary technology: New technology is used alongside the current technology, in combination with but not replacing them. Current technology Cancer Australia has developed on on-line tool (FRA-BOC) to be used by health professionals for the assessment of a patient’s risk of developing breast or ovarian cancer based on family history and other factors.18 Referral to a family cancer clinic for possible genetic is appropriate if the patient has: been assessed as being at potentially high-risk of developing breast or ovarian cancer (Category 3 based on FRA-BOC assessment); family with an unusual pattern of early onset cancer i.e. breast or ovarian cancer occurring at a young age; multiple relatives affected by breast cancer (male or female) or invasive epithelial ovarian cancer; at least one relative affected by both breast cancer and invasive epithelial ovarian cancer; relatives affected with bilateral breast cancer, especially at a younger age (<50); or a personal or family history of breast or ovarian cancer and indicates that she is of Jewish descent. The BRCA1 and BRCA2 genes were discovered in 1994 and 1995, respectively. Both genes are tumour suppressors required for DNA repair and other cellular functions that are BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 6 important in the maintenance of genetic integrity. Mutations in either of these genes may result in DNA repair via error-prone repair mechanisms, leading to an accumulation of mutations and rearrangements.19 Mutations in these genes are inherited as autosomal dominant, meaning that each child has a 50 per cent chance of inheriting the mutation from either the mother or the father.17 Although rare (less than 1% of all BRCA mutations), it is possible for someone to have mutations in both BRCA1 and BRCA2 genes. These individuals do not have a higher risk of cancer nor more severe disease compared to single mutation carriers.20 Individuals considered to have a genetic predisposition to breast or ovarian cancer may be advised to undergo BRCA1 and BRCA2. In Australia, BRCA1 and 2 testing is not listed on the Medicare Benefits Schedule but can be accessed through publically funded Family Cancer Clinics. Most testing is conducted at no cost to the consumer, however this may vary from state-to-state. General practitioners may refer individuals to specialists in familial cancer or clinical geneticists, where appropriate counselling may be provided before and after BRCA1 and BRCA2 testing. Myriad Genetics Inc hold the patents for BRCA1 and BRCA2 and Genetic Technologies Ltd holds the exclusive Australian licence for the tests. However, in 2003 and again in 2008, Genetic Technologies Ltd decided not to enforce its licence and testing can be carried out by all Australian specialist genetic laboratories.9 There are approximately 10 laboratories in Australia which currently provide this service at an estimated cost of $1,650 (personal communication Westmead Familial Cancer Service). Testing for BRCA1 and 2 involves the extraction of DNA from a patient's blood sample and each exon of each gene is amplified by polymerase chain reaction, which is followed by bidirectional sequencing.20 Results may take several weeks to be made available. Diffusion of technology in Australia There is little diffusion of this technology in Australia. The Peter MacCallum Cancer Centre is aware of at least one Australian patient who recently had a sample sent to Ambry Genetics to be analysed by the BreastNext™ panel at a full cost to herself. There appears to be a reluctance by Australian clinicians to use this technology due to potential difficulties in interpreting the significance of mutations in some of the genes included in the panel (personal communication Peter MacCallum Cancer Centre). Australian patients seeking to undergo testing with BreastNext™ would require a clinician to order the test. International utilisation Country Level of Use Trials underway or completed United States Limited use Widely diffused BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 7 Cost infrastructure and economic consequences The current listed price of the BreastNext™ panel is US$4,120, with the OvaNext™ and CancerNext™ panels costing US$5,310 and $5,830, respectively.21 As previously mentioned, the cost of testing a patient in Australia for BRCA1 and BRCA2 is approximately $1,650. The cost of testing an Australian patient with BreastNext™ could not be ascertained. With the advent of next generation sequencing it is expected that costs will fall making it possible to sequence multiple genes simultaneously. Although the company states that clinicians can access genetic counselling services to assist with test selection, case reviews and result interpretation3, the cost of counselling patients who have undergone testing with BreastNext™ would likely have to be met by state funded family cancer clinics. A positive test in any of the genes included in the panel may result in a surveillance programme that may include annual screening and imaging, which could have a cost impact on the public health system. As first-degree relatives would enter a surveillance programme whether they tested positive or negative for an inherited gene mutation17, testing may be an unnecessary cost. Ethical, cultural or religious considerations Patients need to be offered appropriate counselling and sufficient information on the advantages and disadvantages of screening tests, the likelihood of a false positive or false negative result and the consequences of a positive result. Mutations detected in some of the genes included in the BreastNext™ panel may be considered amorphous in that they represent an increased risk, but there is little that may be done about that risk. In addition, the risk is not specific to one cancer, for example, a mutation in the Tp53 gene may represent an increased risk of cancer of the breast, colorectum or brain, making surveillance difficult. A positive test may therefore result in undue worry and stress on the patient. Interestingly though, a US review of screening for inherited breast or ovarian cancer reported decreased rather than increased breast cancer worry or anxiety after risk assessment and testing, though studies with depression as an outcome had mixed results.22 Gene panel testing such as this are currently only accessible on a user-pays basis, which raises issues of equity in that only those women who can afford to pay in excess of $4,000 can access this additional information. Evidence and Policy Safety and effectiveness No peer reviewed studies could be identified in the literature that describes the use of the BreastNext™ panel in women considered to have a predisposition to breast cancer. Ambry Genetics have a number of conference proceedings published on their website, which will be summarised here. All of these presentations cite the paper by Walsh et al (2010), who BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 8 described the use of massively parallel sequencing for the detection of multiple inherited mutations.14 Walsh et al (2010) targeted a panel of 21 genes associated with inherited breast and ovarian cancer. Oligonucleotides were designed to cover coding regions, non-coding intronic sequences and 10-kb3 genomic sequence flanking each gene. All genes apart from BRCA1, BRCA 2 and PSM1 are included in either the BreastNext™ or OvaNext™ panels. Target DNA was isolated from blood of 20 women with a known inherited mutation previously identified via Sanger sequencing (level III-1 diagnostic evidence). Researchers were blinded to the subject’s mutational status and candidate variants were confirmed by conventional Sanger sequencing. DNA libraries were prepared and enriched before hybridisation to the custom made oligonucleotides followed by sequencing. Average coverage was 1,286 reads per nucleotide. The resulting DNA sequences were aligned to the human reference genome and to be considered a possible variant the mutation had to be present on both the sequenced DNA strands and represent ≥15 per cent of total reads. Potential variants are summarised in (Table 3) and include point mutations, small insertions and deletions. A number of additional variants were identified in BRCA1 and BRCA2 (not included in table). 14 Table 3 Point mutations, insertions and deletions identified by Walsh et al Gene Mutation type Mutation size (bp) % variant BRIP1 Deletion 1 43 CDH1 Nonsense 1 46 Deletion 1 15 MLH1 Slice 1 40 MSH2 Nonsense 1 49 p53 Missense 1 41 PALB2 Deletion 2 49 STK11 Slice 1 44 CHEK2 Walsh et al (2011) conducted a follow-up study using the same 21-gene panel in 360 consecutive women who were undergoing surgery for carcinomas of the ovaries (n=273), peritoneal (n=48), fallopian tubes (n=31) and synchronous endometrial and ovarian carcinomas (n=8).23 Women were not selected for family history, however 157 women reported a family history of breast or ovarian cancer and 97 a history of colon, uterine or pancreatic cancer. DNA was sequenced as described above and candidate variants were confirmed by Sanger sequencing level III-2 diagnostic evidence). A total of 85 loss of function mutations were identified in 82/360 (22.8%) women, with three women having 3 Kb= kilo bases BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 9 two mutations. Mutations were identified in 12 of the 21 genes (Figure 3). In discussion, the authors state that reagent costs of the 21 gene panel (the BROCA test) are approximately $200 and that the test is not patented. Figure 3 Mutations were detected in 12 of the 21 genes in 82 women A similar study by Kuusisto et al (2011) screened 82 high-risk Finnish women who were BRCA1 and BRCA2 founder-mutation4 negative for seven breast cancer susceptibility genes: BRCA1, BRCA2, CHEK2, PALB2, BRIP1, RAD50 and CDH1. Of these women, 57 had breast cancer, eight had bilateral breast cancer, one had ovarian cancer, five had both breast and ovarian cancer and 11 were unaffected. Sequenced DNA from these subjects was compared to sequenced DNA from 384 healthy female volunteers (not all of whom were screened for all mutations). Mutation screening was performed by direct sequencing. Three previously described mutations in BRCA1 and CHEK2 were identified in 11/82 (13.4%) high-risk women. Fourteen novel mutations were found: three in BRCA2, BRIP1 and PALB2, and five in CHEK2. Sixteen different BRCA1 and BRCA2 variants were identified with all but two BRCA1 having previously been reported to be neutral. One of these two variants was observed in 4/82 (4.9%) of the high-risk women and in 6/367 (1.6%) of the controls. The remaining BRCA1 variant (a deletion) was found in only one woman, with later analysis identifying two family members with the same deletion. Two previously reported CHEK2 mutations were identified in 10/82 (12.2%) of the high-risk women. One woman had both of these mutations and two also had missense mutations in the PALB2 gene. Although the authors felt that it was important to provide information to assist counselling and surveillance to BRCA1 and BRCA2 negative patients and their families to in regard to potential mutations, this study 4 Founder mutation: a mutation that appears in the DNA of one or more individuals who are founders of a distinct population, and are passed down to other generations. BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 10 emphasises the number of potential mutations that may have to be screened for in any given high-risk population.24 The results of the first 400 BRCA1 and BRCA2-negative women to receive testing with BreastNext™ were reported to the 2013 conference of the US National Consortium of Breast Centers (NCBC). The NCBC is an “organisation of breast professionals, breast centres, providers of service to care providers, and corporations that supply equipment and pharmaceuticals to care providers.” Of the 400 women, 41 (10%) were found to have a mutation in the following genes: PALB2 (n=9), ATM (n=9), CHEK2 (n=8), MUTYH (n=4), BARD1 (n=3), RAD50 (n=3) and one each in pTEN, RAD51C, Tp53, MRE11A and NBN (level IV diagnostic evidence).25 However, the significance of these results and the implications for patients of these positive results were not discussed. Positive tests may be difficult to interpret if the genetic variant is not the known founder mutation. 26 In addition, mutations may occur in genes of known importance, but whether these mutations result in functional changes resulting in consequences for the health of the individual may remain unknown. Economic evaluation No economic evaluation could be identified. Walsh et al (2010) discussed the potential costsavings when conducting multiple analyses across a number of mutations. A price of US$3,340 was quoted for comprehensive BRCA1 and BRCA2 testing, and that if negative, additional mutations could be tested for individually at a cost of $650. He then goes on to quote an approximate cost for the analysis of one sample by the 21-gene panel described in his study as $1,500. As it is unlikely one sample would be run during this analysis, economies of scale would reduce this cost substantially.14 Ongoing research No on-going clinical trials of the BreastNext™ panel were identified. Other issues No issues were identified. Summary of findings The 21-gene and 14-gene panels detected a number of mutations in candidate genes, which may be of significance in women considered to be at a genetic predisposition to breast or ovarian cancer. The impact of these findings on patient outcomes was not discussed in any of the included papers. It may be assumed that these women and their first-degree relatives would then enter a surveillance programme. In Australia, first-degree relatives would be eligible to enter into such a programme even if testing for BRCA1 and BRCA2 was negative, therefore it is difficult to gauge the usefulness of tests such as BreastNext™ and OvaNext™. BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 11 Of concern, however, is that these tests may be accessed by women who may not require testing, and that this may have consequences for the public health system. HealthPACT assessment Although some of the genes included in the BreastNext™ panel may be associated with breast cancer, there is a paucity of evidence linking all of the included mutations with the disease. There were no peer-reviewed studies identified that could demonstrate the clinical utility of this product and therefore the impact this product may have on clinical decision making cannot be determined. Of concern is that these tests may be accessed by women who may not require testing, and that this may have consequences for the public health system. Therefore it is recommended that no further research on behalf of HealthPACT is warranted at this time. Number of studies included All evidence included for assessment in this Technology Brief has been assessed according to the revised NHMRC levels of evidence. A document summarising these levels may be accessed via the HealthPACT web site. Total number of studies Total number of Level III-1 diagnostic evidence studies Total number of Level III-2 diagnostic evidence studies Total number of Level IV diagnostic evidence studies 4 1 1 2 References 1. Ambry Genetics (2013). Hereditary cancer panels Available from: http://www.ambrygen.com/hereditary-cancer-panels [Accessed 15th April 2013]. 2. Ambry Genetics (2013). Patient information: Genetic Testing for Hereditary Breast Cancer. Available from: http://www.ambrygen.com/sites/default/files/BreastNext_Patient_Interactive.pdf [Accessed 16th April 2013]. 3. Ambry Genetics (2013). Hereditary Cancer Testing: BreastNextTM. Available from: http://www.ambrygen.com/sites/default/files/BreastNext_Diagnostic_Interactive.pdf [Accessed 16th April 2013]. 4. Ambry Genetics (2012). The Case for Clinical Adoption of Hereditary Breast Cancer Panel Testing. Available from: http://www.ambrygen.com/sites/default/files/BreastNext_WhitePaper_112812_0.pdf [Accessed 12th April 2013]. 5. Avril, N.&Adler, L. P. (2007). 'F-18 Fluorodeoxyglucose-Positron Emission Tomography Imaging for Primary Breast Cancer and Loco-Regional Staging'. Radiologic Clinics of North America, 45 (4), 645-57. 6. AIHW & CA (2012). Breast cancer in Australia: an overview, Australian Institute of Health and Welfare & Cancer Australia, Canberra http://www.aihw.gov.au/WorkArea/DownloadAsset.aspx?id=10737423006. BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 12 7. Ministry of Health (2012). Cancer: New registrations and deaths 2009, New Zealand Ministry of Health, Wellington http://www.health.govt.nz/publication/cancer-newregistrations-and-deaths-2009. 8. Ministry of Health (2010). Cancer: New Registrations and Deaths 2007, New Zealand Ministry of Health, Wellington http://www.moh.govt.nz/moh.nsf/indexmh/cancerreg-deaths-2007-jun10. 9. BCNA (2011). Genetic testing Background Paper. [Internet]. Breast Cancer Network Australia. Available from: http://www.bcna.org.au/sites/default/files/genetic_testing_background_paper.pdf [Accessed 15th April 2013]. 10. Easton, D. F., Pooley, K. A.et al (2007). 'Genome-wide association study identifies novel breast cancer susceptibility loci'. Nature, 447 (7148), 1087-93. 11. Rahman, N., Seal, S.et al (2007). 'PALB2, which encodes a BRCA2-interacting protein, is a breast cancer susceptibility gene'. Nat Genet, 39 (2), 165-7. 12. Meijers-Heijboer, H., van den Ouweland, A.et al (2002). 'Low-penetrance susceptibility to breast cancer due to CHEK2(*)1100delC in noncarriers of BRCA1 or BRCA2 mutations'. Nat Genet, 31 (1), 55-9. 13. Seal, S., Thompson, D.et al (2006). 'Truncating mutations in the Fanconi anemia J gene BRIP1 are low-penetrance breast cancer susceptibility alleles'. Nat Genet, 38 (11), 1239-41. 14. Walsh, T., Lee, M. K.et al (2010). 'Detection of inherited mutations for breast and ovarian cancer using genomic capture and massively parallel sequencing'. Proc Natl Acad Sci U S A, 107 (28), 12629-33. 15. Teo, Z. L., Sawyer, S. D.et al (2013). 'The incidence of PALB2 c.3113G>A in women with a strong family history of breast and ovarian cancer attending familial cancer centres in Australia'. Fam Cancer. 16. Dite, G. S., Whittemore, A. S.et al (2010). 'Increased cancer risks for relatives of very early-onset breast cancer cases with and without BRCA1 and BRCA2 mutations'. Br J Cancer, 103 (7), 1103-8. 17. NHMRC (2007). Cancer in the family. [Internet]. National Health and Medical Research Council. Available from: http://www.nhmrc.gov.au/_files_nhmrc/file/your_health/egenetics/practioners/gem s/sections/05_cancer_in_the_family.pdf [Accessed 16th April 2013]. 18. Cancer Australia (2013). Familial Risk Assessment FRA-BOC. [Internet]. Australian Government. Available from: http://canceraustralia.gov.au/clinical-bestpractice/gynaecological-cancers/familial-risk-assessment-fra-boc [Accessed 15th April 2013]. 19. Trainer, A. H., Thompson, E.&James, P. A. (2011). 'BRCA and beyond: a genome-first approach to familial breast cancer risk assessment'. Discovery medicine, 12 (66), 43343. 20. Lau, C.& Suthers, G. (2011). 'BRCA testing for familial breast cancer'. Australian Prescriber, 34, 49-51. BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 13 21. Ambry Genetics (2013). 2013 CPT Codes and Client Pricing. Available from: http://www.ambrygen.com/sites/default/files/Client_By_Name_04_09_2013_0.pdf [Accessed 12th April 2013]. 22. Nelson, H. D., Huffman, L. H.et al (2005). 'Genetic risk assessment and BRCA mutation testing for breast and ovarian cancer susceptibility: systematic evidence review for the U.S. Preventive Services Task Force'. Ann Intern Med, 143 (5), 362-79. 23. Walsh, T., Casadei, S.et al (2011). 'Mutations in 12 genes for inherited ovarian, fallopian tube, and peritoneal carcinoma identified by massively parallel sequencing'. Proc Natl Acad Sci U S A, 108 (44), 18032-7. 24. Kuusisto, K. M., Bebel, A.et al (2011). 'Screening for BRCA1, BRCA2, CHEK2, PALB2, BRIP1, RAD50, and CDH1 mutations in high-risk Finnish BRCA1/2-founder mutationnegative breast and/or ovarian cancer individuals'. Breast Cancer Res, 13 (1), R20. 25. Keiles, S. Beyond BRCA: Identifying Hereditary Breast Cancer Families Through the Use of Multi Gene Cancer Panels. National Consortium of Breast Centers; Las Vegas2013. 26. Narod, S. A. (2012). 'The tip of the iceberg: a countercurrents series'. Curr Oncol, 19 (3), 129-30. Search criteria to be used (MeSH terms) Genetic Predisposition to Disease Germ-Line Mutation Genetic testing Risk Assessment Breast Neoplasms/diagnosis/ genetics Mutation BreastNext™: gene panel for the diagnosis of hereditary breast/ovarian cancer: May 2013 14