Survey
* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
Ring-closing metathesis wikipedia , lookup
Homoaromaticity wikipedia , lookup
George S. Hammond wikipedia , lookup
Physical organic chemistry wikipedia , lookup
Aromaticity wikipedia , lookup
Kinetic resolution wikipedia , lookup
Asymmetric hydrogenation wikipedia , lookup
Baylis–Hillman reaction wikipedia , lookup
Petasis reaction wikipedia , lookup
Strychnine total synthesis wikipedia , lookup
Chapter 4 Stereochemistry and Chirality ISOMERS if different connectivity if they have same connectivity CONSITUTIONAL ISOMERS if a rotation about σ bond makes them identical STEREOISOMERS if bonds must be broken and reformed to make them identical CONFORMATIONAL ISOMERS if they are nonsuperimposable mirror images CONFIGURATIONAL ISOMERS if they are not nonsuperimposable mirror images ENANTIOMERS if they have no stereogenic centers DIASTEREOISOMERS Z, E ISOMERS (DIASTEREOMERS) Flow chart for determining the relationship between isomers. 1 Symmetry Elements A mirror plane in Cartesian coordinates that includes the y and z axis means that for every point {x,y,z} there is a corresponding point {–x,y,z}. Ifa molecule has a mirror plane, then for every atom on one side of the plane there is an equivalent atom that is the mirror equivalent on the opposite side of the plane. When two identical groups are on one carbon, there is an internal mirror plane passing through the molecule. H O H H H H H H 2 H Symmetry Elements (continued) An inversion center takes every point {x,y,z} to an equivalent point {–x,–y,–z}: Br H H3C 3 H CH3 H Br H Chirality The word "chirality" (from the Greek) refers to the property of "handedness". To first approximation your right and left hands are mirror images that cannot be superimposed on top of each other. 4 Chirality (continued) Molecules that lack both a mirror plane and an inversion center can have nonsuperimposable mirror images and are said to be chiral. A chiral center usually is a tetrahedral carbon with four different groups attached to it. Chiral carbons are also referred to as stereocenters, stereogenic centers, or asymmmetric centers. 1-Bromo-1-chloroethane is chiral: H H 1 4 3 2 Br Cl H 3C Br CH3 Cl H H Br Cl H 3C Cl Br H 3C H CH3 Br Cl H 3C 5 H Br Cl Chirality (continued) Any molecule that has an internal mirror plane is achiral. Br H3C H H Cl Cl H3C CH3 Cl Cl Br Br CH3 Cl Br Br A molecule that has an inversion center is achiral. Br H H H3C CH 3 H Br H3C H H Br H H H CH 3 Br rotate 90° Br H H3C H CH 3 H Br H H H H3C 6 Br CH 3 Br H H rotate 180° Chirality (continued) Further examples of achiral and chiral molecules: HO H H Br Br Cl H H Cl achiral OH achiral achiral HO Cl H Br H 3C CH3 chiral OH Cl H H Cl Br chiral 7 chiral Stereoisomers: Enantiomers Molecules that are mirror images but are not superimposable are called enantiomers. Enantiomers are stereoisomers. That is, they are isomers that have the same connectivity, but have groups that occupy different regions of space. Enantiomers have the same physical properties (e.g. melting points, boiling points, etc) but differ in the way they interact with other chiral objects (e.g. polarized light or different chiral molecules). It is possible to have a molecule with no chiral center that is chiral. Consider 1,3-dimethylallene, shown below: H 3C CH3 H • H CH3 H H 3C H H 3C H 3C • H • CH3 H CH3 H H H 3C H • H • H • CH3 H 3C 8 H CH3 Stereoisomers: Diastereomers Stereoisomers that are not enantiomers are called diastereomers. H3C Cl H3C C2H5 Br Br Br Cl C2H5 Br Cl Cl For a molecule with multiple chiral centers, the number of possible stereoisomers is given by: x = 2n where x is the number of possible isomers and n is the number of chiral centers. Thus, for molecules with two chiral centers there are four possible stereoisomers. (e.g. cholesterol, which has eight stereogenic centers, has 256 possible stereoisomers!! ) 9 Stereoisomers: Meso compounds Another type of stereoisomer is called a meso compound. • A meso compound contains at least two stereogenic centers, yet the molecule itself is not chiral. • Meso compounds contain an internal plane of symmetry. H3C Cl H3C CH3 Cl Br Cl Br . 10 CH3 Cl Br Br Cahn-Ingold-Prelog Convention for Assigning Absolute Configurations The rules for assignment of priorities in order to assign absolute configuration are based on the same set of rules for assigning E and Z stereochemistry. Use the Cahn-Ingold-Prelog scheme to assign priorities to the groups attached to the carbon atom as follows: I. Consider each group attached to the carbon in question separately. II. Rank the priority of the substituent on the carbon as follows. A. The atom with the higher molecular weight takes top priority. If there are two isotopes of the same atom, the isotope with the higher mass takes priority. B. If this does not distinguish, then move down the chain of the substituent assigning priorities until you reach the first point of difference. III. Multiple bonds count as multiples of that same atom. IV. Once the priorities have been assigned, rotate the molecule in space so that the lowest priority group is pointing back. V. Connect the three remaining groups in order of decreasing priority and examine the direction of the resulting rotation. VI. Clockwise rotation is termed R (rectus; right) and counterclockwise rotation is termed S (sinister; left). • Alternatively, if the lowest priority is NOT in the back simply switch the group that is lowest priority with another group. You have just made the mirror image of the molecule. Now assign R or S to the compound as it IS drawn, and then SWITCH THE R AND S LABEL TO GET THE ORIGINAL COMPOUNDS. 11 Cahn-Ingold-Prelog Convention for Assigning Absolute Configurations H Cl 120° rotation H Br H3 C H3 C Cl Br 2 4 120° rotation 1 4 3 3 1 2 Counterclockwise = S 12 Fischer Projections The conversion of a perspective drawing to a Fischer projection requires rotating the molecule so that the "top" and "bottom" groups are oriented back, away from you as is shown for the two molecules below. H H H3 C OH H3 C OH CH2 OH CH2 OH H H HO H OH H H CHO HO OH H OH OH CH2 OH CH2 OH H CHO HO H OH A Fischer projection can be used to assign absolute configuration (R or S). 4 3 4 3 1 2 1 2 R 4 1 4 3 1 2 3 2 S 13 A rotation of three groups, as shown below, is equivalent to rotating the molecule around a single bond (here the CH3 -Ccentral bond). H3 C H3 C H HOH2 C CH2 OH HO OH H A 180 degree rotation of the entire molecule regenerates the identical configuration. OH OH H CH2 OH H CH3 CH2 OH CH3 S CH3 HOH2 C H3 C H H HOH2 C OH OH S Are we having fun yet?? 14 A 90 degree rotation of the entire molecule generates the enantiomer of the original molecule. H H3 C H OH H3 C OH CH2 OH CH2 OH R OH OH H CH2 OH H CH3 CH2 OH CH3 S If you flip the molecule out of the page, you generate the enantiomer of the original molecule. H H3 C H OH H3 C OH CH2 OH CH2 OH R H HO H CH3 HO CH2 OH CH3 CH2 OH S 15 Fischer projections are also very convenient for identifying whether pairs of molecules are identical, enantiomers or diastereomers. For example: H H HO CH2 OH H3 C Enantiomers HOH2C OH HO OH CH3 H Diastereomers Diastereomers H Diastereomers H H HO CH2 OH HO CH3 Enantiomers HOH2 C OH H3 C OH H H 16 In summary: • Exchanging any two groups around a Fischer projection generates the enantiomer of the original compound. • Rotating 90° generates enantiomers. • Flipping the molecule out of the page generates enantiomers. • Rotating 180° regenerates the same molecule. • Rotating three groups is like a rotation about a bond and does not change the configuration. • Exchanging groups twice regenerates the original stereochemistry. Review: • A molecule with one chiral center will be chiral. • A molecule need not have a chiral center to be chiral. • A molecule with an inversion center cannot be chiral. • A molecule with one or more internal mirror planes cannot be chiral. A molecule can have more than one chiral center and not be chiral (if the chiral centers are symmetry related by a mirror plane or an inversion center). 17 If you have a molecule with two chiral centers with different sets of things attached (1 and 2) either which can be R or S, there are four possible molecules that can result: (1R, 2S), (1R, 2R), (1S, 2S), (1S, 2R). • Since for a single chiral center R and S are related by mirror symmetry then if in a molecule all possible centers are switched from R to S and vice versa, then the resultant molecule will be an enantiomer of the original molecule. • If one or more chiral centers, but not all centers are switched from R to S, the molecules will not be related by mirror images, and therefore are not enantiomers. Such molecules are called diastereomers and they have different physical and chemical properties. This is illustrated in the example below: Cl 1 2 Cl OH Diastereomers Diastereomers (1S, 2S) Diastereomers Cl Enantiomers (1S, 2R) Enantiomers (1R, 2R) OH (1R, 2S) Cl OH OH 18 If you have a molecule with two chiral centers with the same sets of things attached (1 and 2) either which can be R or S, four possible molecules that can result: (1R, 2S), (1R, 2R), (1S, 2S), (1S, 2R) The following relations will hold as illustrated below: H3C 1 2 H3C H H3C OH H3C OH H OH H OH H Enantiomers Diastereomers (1S, 2S) Diastereomers (1R, 2R) (1R, 2S) H3C H OH H3C OH H Identical, MESO (1S, 2R) H3C OH H H3C H OH The chemical and physical properties of diastereomers can be completely different. Thus, they will react at different rates and can have different melting and boiling points etc. The properties of enantiomers will be identical (so long as they are not interacting with a chiral perturbation as will be described in more detail later). Thus, they react with achiral materials at the same rates and have identical melting points. 19 Disubstituted Cyclohexanes Cis and trans isomers can be drawn as planar views that are convenient for looking for symmetry elements. Thus cis 1,2-dimethylcyclohexane can be drawn as shown below. Note: that the isomers with both methyl groups up out of the page is related to that with both into the page by rotating 180° about an axis as shown below: Note also that in the planar view there is a mirror plane perpendicular to the page bisecting the C-C bonds with the methyl groups attached, thus we conclude that the molecule is achiral. This is not obvious looking at the mirror image in the chair form until you take into account that the molecule is conformationally flexible and a rotation followed by a chair-chair-flip makes the mirror images congruent. 20 rotate 120° noncongruent chair-chair flip rotate 120° Note that if you cooled cis 1,2-diethycyclohexane to a temperature at which the chair-chair flip was extremely slow, then the two mirror images would be nonconguent and in principle you could separate each of the enantiomers. In contrast the trans form of 1,2-dimethylcyclohexane has no mirror plane when drawn in the planar form. It does however have a two-fold axis of rotation which relates the up and down methyl groups. Since there is no mirror (and no inversion center) the trans form is chiral and we would therefore expect the mirror image not to be superimposable on the original molecule as shown below. rotate 120° rotate 180° noncongruent noncongruent 21 1,3-dimethylcyclohexane • If we consider cis and trans 1,3-dimethylcyclohexane then we see again that the cis isomer has a mirror plane and the trans isomer does not. • Note also that in the chair form both the axial-axial, and the equatorialequatorial forms have mirrors as drawn and thus are achiral even when each form is frozen out at low temperature. chair-chair flip 22 Equivalence Homotopic hydrogens: If you have two identical molecules each with a methylene group of the form X- CH(1)H(2)-X, and you replace one of the hydrogens of the H(1) in one molecule with a dummy atom (Y) and then you independently replace the H(2) in the other molecule with a dummy atom(Y), if then the two molecules thus created will be identical to each other, the hydrogens are said to be homotopic. (e.g. The protons on a methyl group are homotopic) X H C H X X Y C H X Identical X H C Y X Enantiotopic: If you have a methylene group of the form X- CH2 -Z, and you replace one of the hydrogens of the CH2 with a dummy atom and then you independently replace the other hydrogen of the CH 2 group with a dummy atom (Y), the two molecules thus created will be enantiomers of each other. The protons are said to be enantiotopic. In a nonchiral environment enantiotopic protons are equivalent. However, in a chiral environment such as a chiral solvent, they can, in principle, have different chemical shifts. Z H C H X Z Y C H X Enantiomers Z H C Y X 23 Diastereotopic: If you have a methylene group for example, in a chiral molecule X- CH2 -Z* (where the * indicates that Z is a chiral group), and you replace one of the hydrogens of the CH2 with a dummy atom (Y) and then you independently replace the other hydrogen of the CH 2 group with a dummy atom the two molecules thus created will be diastereomers to each other. Thus, in principle, the two hydrogens should have different chemical shifts. Z* H C H X Z* Y C H X Diastereomers Z* H C Y X 24 On The Interaction of Enantiomers with Chiral Perturbations: A chiral perturbation is any physical or chemical perturbation that has a handedness. • Let us assume that we have a pair of chiral acids that are enantiomers. If a solution is made up of equal amounts of the R and S isomers, the mixture is said to be racemic. • If sodium hydroxide is added to the solution, then the acids will be deprotonated and will result in a racemic solution of the carboxylate anions. • We then crystallize them with a chiral cation as shown below: H3C H3C Enantiomers H H3C H3C COO COO H R S H3C H3C N H S H3C H3C H H3C H3C COO H R H3C H3C N H3C H S COO S Diastereomers 25 H3C H N S • In such a case the two salts that are formed are diastereomers. (Remember: they will have different physical properties including melting points and solubility) • As a result of these different physical properties, one salt may preferentially crystallize from the solution leaving the other behind. If the crystallized salt is isolated and then acidified, the chiral acid of just one of the enatiomers will be regenerated. Such as process is call a chemical resolution of enantiomers. Note: There are many examples of interactions of chiral molecules with chiral perturbations leading to diastereomeric interactions. • Different molecules can be separated by chromatography. If the stationary phase is chiral, then each enantiomer in a racemic solution will interact differently with the stationary phase since the interactions will be diastereomeric. As a result, each enantiomer may move through the chiral material at a different speed. Thus, a chiral resolution can be effected. 26 The Interaction of Chiral Molecules with Light • Plane polarized light is light wherein the electric field oscillates in one plane. • Plane polarized light can be thought of being made up of a superposition of two chiral and opposite circularly polarized electric fields. • If we now consider each hand of the circularly polarized light interacting with one enantiomer of the chiral carboxylate that we considered above, we see that the interaction of the light with the molecule is a diastereomeric interaction. • Accordingly, the index of refraction (speed of light in the solution relative to that of light in a vacuum) for the left and right circularly polarized light will be different. Thus, one hand of the circularly polarized light will get slowed down more. H3C H H3C H3C H H3C COO R COO R diasteriomeric interaction with each hand of circularly polarized light 27 • As a result when the light passes through a cell containing a non-racemic assembly of chiral molecules, the phase shift of one hand of the circularly polarized light relative to the other will result in the plane of light being rotated by angle α. Such a solution is optically active. 0 in α out • Since a racemic solution has equal amounts of chiral molecules that have opposite configurations, for each molecule rotating the light in one direction, there will be a molecule of opposite configuration rotating the light in the opposite direction. Thus, the two rotations will cancel, and there will be no net rotation of light. Such a solution is not optically active. = 0 Note: A solution of a meso compound is not chiral, and it is not racemic. A racemic solution is made up of an equal mixture of chiral molecules. Since a meso compound is not chiral, it is not optically active. = 0 28 Amine Inversions Tertiary amines substituted with three different groups in frozen configurations are chiral. Thus, their mirror images are not superimposable. N H 3C N CH2 OH HOH 2C H H CH3 . However there is a process called amine inversion wherein the substituents on the nitrogen distort through a plane transition state such that there is an inversion of configuration: CH2 OH H 3C H H H 3C N H 3C N CH2 OH H 29 CH2 OH Such a process creates the enantiomer of the original molecule: H H 3C N CH2 OH N HOH 2C H N CH3 H 3C CH2 OH H • This inversion process, which is an equilibrium, will take a single chiral isomer into a racemic mixture. Any process that allows one chiral isomer to interconvert with its enantiomer is termed racemization. • Since amine inversion can be fast at room temperature, it is often impossible to isolate one enantiomer of chiral amines. For example in ammonia the barrier for inversion is 5.8 kcal/mol (the rate at ambient temperature is about 2 x 1011 / sec), and for methylamine the barrier for inversion is 4.8 kcal/mol. If a chiral amine has the nitrogen tied down into a bicyclic ring system, then it would be impossible for the nitrogen to invert without introducing an unreasonable amount of strain into the molecule. In such cases, it should be possible to isolate one enantiomer: 1 N 3 2 R It is possible to assign configurations to chiral amines. Simply use the CahnIngold-Prelog convention and always assign the lone pair the lowest priority. 30 Stereoselective and Stereospecific Reactions. • Regioselective reaction: A reaction in which one structural isomer is formed preferentially over another. (In some cases, this preference can be extremely lopsided such that essentially only one isomeric product is formed. In such cases, this is termed a regiospecific reaction.) • Stereoselective reaction: Is a reaction in which one stereoisomer in a mixture is created or consumed more quickly than other, such that one stereoisomeric product is preferentially formed. Note: a reaction can be moderately or very stereoselective. • Stereospecific reaction: A reaction in which relative chemistry of starting materials defines, due to the mechanism of the reaction relative stereochemistry of the products is stereospecific Note: all stereospecific reactions are stereoselective, but the reverse is not necessarily so. Consider the reaction of Br2 with Z, and E-2-butene: Br H H 3C Br2 CH3 CH3 H 3C Br H meso HBr H 3C CH3 Br2 Br H CH3 H 3C Br H R,R CH3 H 3C HBr S,S Here the mechansim, i.e. anti addition of the bromine to the double in combination with the stereochemistry of the starting materials (cis or trans) determines the stereochemistry of the products. 31 Enantiomeric and Diastereomeric Transition States Achiral molecule reacts with an achiral reactant: If an achiral molecule or intermediate interacts with an achiral reactant then the transition state will be either be achiral or enantiomeric (if a chiral center is being formed). Br Br H3C CH2CH3 H3C H H H3C CH2CH3 CH2CH3 Br H + Br R S Enantiomeric transition states have the same energy. Thus, the R and S isomer will form at identical rates and a racemic mixture will always result. S R Achiral R S Chiral molecule reacts with a chiral reactant: If a chiral molecule or intermediate interacts with a chiral reactant then the transition state will be diastereomeric. Ph R Ph H CH3 H H B H CH3 R R Ph H B R CH3 B H CH3 CH3 CH3 H S S H H H PH H B Ph Ph 32 B 33 Enantiomeric and Diastereomeric Transition States (continued) Therefore, each transition state will be a different energy and the diasteriomeric products will be formed at different rates, and they will have different energies. R RR S RR S and R R RR S RR Achiral molecule reacts with a chiral resolved reagent: If an achiral molecule interacts with a chiral resolved reagent (such as an enzyme) in such a manner that in the transition state one or more chiral centers is being formed, then the transition states for the R or S center will be diastereomeric. Therefore, the R and S product will form at different rates. fumarase fumarase S H 2O H OOC Achiral H OOC OOC H H HO COO H OH S Achiral 34 COO H CH2COO S Enantiomeric and Diastereomeric Transition States (continued) R RR S RR S and R R RR S RR In the case of an enzyme this stereoselectivity (i.e. the preferential formation of one stereoisomer over another) can be very high such that in biological systems often only one isomer is formed. This means that the two diastereomeric transition states are most likely different in energy by 3 kcal/mol or more. Tremendous effort has been devoted toward developing reagents and catalysts for use in organic synthesis that work in much then same manner such that a chemist can select the chiral configuration of a given center. (A Nobel Prize was awarded for this last year). 35 Inversion of Configuration In a nucleophilic substitution reaction that is concerted (i.e. bonds are being made and broken at the same time), the nucleophile (Nu) attacks the molecule from the side opposite from the group that will leave (called the leaving group, LG) (left). A B B A LG Nu B Nu LG C A Nu LG C C • As this happens the other groups distort to accommodate the incoming group and the molecule goes through a transition state that is basically symmetrical (middle). • Then as the bond forming step with the nucleophile is completed and the leaving group departs, the geometry of the rest of the molecule continues to relax in such a way to restore tetrahedral geometry about the central carbon atom (right). • This process involves a net inversion of configuration as illustrated in the example below. H CH3 H 3C H Cl Cl CH3 H δ δ Cl Cl D Cl Cl D D S R • Note that with this degenerate substitution of Cl- for Cl- the configuration is inverted. 36 Stereochemistry of "Carbocation" - Addition to Alkenes D C D C E E D Nu B Nu A Nu C A B A B D C A E Nu D C B B A A D B C E Nu E E Nu Nu Nu C A D C D E A E B A B E D Nu B Nu C Nu top or bottom addition E-Nu E-Nu D C C A START HERE!! E-Nu A B D C D A B B E-Nu top or bottom addition C E D E-Nu E D C Nu Nu B D A C B A E-Nu E Nu B A Nu Nu C E C D Nu A B E Nu E A E B D A Nu B A C C B D D Nu 37 C D B E Nu C A D E Nu A B Stereochemistry of Syn- Addition to Alkenes Y B A C Y C X C X A A B D Y X D D B rotatate 60° B A XY X Y Y X C C D AC X A A D D B B Y X X Y Y B C A START HERE!! C C D B D A B D X Y A Y B X Y X D B A C Y B D A C C X YX D X Y rotatate 60° A Y B B D D C A A C D X B Y X 38 X C Y Stereochemistry of Anti- Addition to Alkenes inversion D D B E D C E B A Nu B E-Nu E-Nu E-Nu B A C A C C D B D A B D E-Nu E-Nu E-Nu Nu B E C A Nu C inversion Nu C A E A Nu E inversion START HERE C B A B A A A D Nu C B D C E Nu E Nu D C C D B D D Nu A B E E inversion A Nu B E D D C Nu C inversion inversion C D B A Nu A E E 39 B Addition to 1-Methyl Cyclohexane E Nu Nu E E Nu substitution with INVERSION E Nu X2 Hg(OAc)2 HOX where X = Br Cl E E Nu E Nu D Nu E Nu E E Nu syn and anti addition E Nu E E D Nu Nu HX (DX) HX (DX), H2 O HX (DX), ROH where X = Br Cl E E X 1. X Y Y D E X 2. step 2 Y, (Y') E syn addition X E D Y X H2BH OOs(O)2O OMn(O)2O H-H, catalyst Y 40 X Y, (Y') H E H E Nu X2 Hg(OAc)2 HOX where X = Br Cl NuH H E substitution with INVERSION H H Nu Nu H E Nu E H E E H E H Nu H H H Nu E H Nu D Nu H E Nu H E H E Nu H E Nu E syn and anti addition H X D H H E H H 1. X D E E Nu Nu HX (DX) HX (DX), H2 O HX (DX), ROH where X = Br Cl H H Y H E X Y X H H H Y H D Y, (Y') X X 2. step 2 H Y, (Y') E H E syn addition H Y X Y H2BH OOs(O)2O OMn(O)2O H-H, catalyst Y X H H X H Y, (Y') H Y, (Y') X H Addition to Cis Double Bonds Homework draw out all the products for each of these additions for (E)-2pentene. 41