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Chapter 27
Bacteria and Archaea
細菌與古生菌
PowerPoint® Lecture Presentations for
Biology
Eighth Edition
Neil Campbell and Jane Reece
Lectures by Chris Romero, updated by Erin Barley with contributions from Joan Sharp
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Overview: Masters of Adaptation
• Prokaryotes thrive almost everywhere,
including places too acidic, salty, cold, or hot
for most other organisms Ò 無所不在的原核生物
• Most prokaryotes are microscopic, but what
they lack in size they make up for in numbers
• There are more in a handful of fertile soil
than the number of people who have ever
lived
Ò 型態微小卻以量取勝
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
1
Overview: Masters of Adaptation
• Prokaryotes thrive almost everywhere,
including places too acidic, salty, cold, or hot
for most other organisms Ò 無所不在的原核生物
http://www.usatourist.com/slideshows/yellowstone/images/Hot%20Spring.jpg http://www.dailygalaxy.com/.a/6a00d8341bf7f753ef01347fd5dfb2970c-500wi
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
• They have an astonishing genetic diversity
• Prokaryotes are divided into two domains:
bacteria and archaea
Ò 原核生物:
a. bacteria 細菌
b. archaea 古生菌
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
2
Fig. 27-1
Concept 27.1: Structural and functional
adaptations contribute to prokaryotic success
• Most prokaryotes are unicellular, although
some species form colonies Ò 絕大多數為單細胞
Ò 部分則形成聚落/菌落
• Most prokaryotic cells are 0.5–5 µm, much
smaller than the 10–100 µm of many
eukaryotic cells Ò 型態小於許多真核生物的細胞
• Prokaryotic cells have a variety of shapes
Ò 具有多樣化的外形
• The three most common shapes are spheres
(cocci), rods (bacilli), and spirals a. 球狀
b. 桿狀
c. 螺旋狀
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3
Fig. 27-2
2 µm
1 µm
(a) Spherical
(cocci)
(b) Rod-shaped
(bacilli)
Cell-Surface Structures
5 µm
(c) Spiral
/ 細胞表面的構造
• An important feature of nearly all prokaryotic
cells is their cell wall, which maintains cell
shape, provides physical protection, and
prevents the cell from bursting in a hypotonic
environment Ò 維持型態 / 保護 / 抵抗低張環境
• Eukaryote cell walls are made of cellulose or
chitin
• Bacterial cell walls contain peptidoglycan, a
network of sugar polymers cross-linked by
polypeptides Ò 細菌細胞壁組成為胜肽聚醣/肽聚醣
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4
• Archaea contain polysaccharides and proteins
but lack peptidoglycan Ò古生菌細胞壁則為多醣與蛋白質
• Using the Gram stain, scientists classify many
bacterial species into Gram-positive and
Gram-negative groups based on cell wall
composition Ò 革蘭氏染色 / G(+) and G(-)
• Gram-negative bacteria have less
peptidoglycan and an outer membrane that
can be toxic, and they are more likely to be
antibiotic resistant
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Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
http://pathmicro.med.sc.edu/fox/gram-st.jpg
5
• Many antibiotics target peptidoglycan and
damage bacterial cell walls
Ò 抗生素的作用標的
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Fig. 27-3
G(+)
G(-)
Carbohydrate portion
of lipopolysaccharide
Peptidoglycan
Cell
wall layer
Cell
wall
Outer
membrane
Peptidoglycan
layer
Plasma membrane
Plasma membrane
Protein
Protein
Grampositive
bacteria
(a) Gram-positive: peptidoglycan traps
crystal violet.
Gramnegative
bacteria
20 µm
(b) Gram-negative: crystal violet is easily rinsed away,
revealing red dye.
6
Fig. 27-3a
G(+)
http://faculty.ircc.edu/faculty/tfischer/micro%20resources.htm
Fig. 27-3b
Carbohydrate portion
of lipopolysaccharide
Outer
membrane
Cell
wall Peptidoglycan
layer
Plasma membrane
G(-)
Protein
(b) Gram-negative: crystal violet is easily rinsed
away, revealing red dye.
7
G(-)
http://faculty.ircc.edu/faculty/tfischer/micro%20resources.htm
http://faculty.ircc.edu/faculty/tfischer/images/cell%20wall%20comparisons.jpg
8
http://faculty.ircc.edu/faculty/tfischer/images/gramstain.jpg
http://www.personal.psu.edu/faculty/j/e/jel5/biofilms/graminstr.jpg
Fig. 27-3c
Grampositive
bacteria
Gramnegative
bacteria
20 µm
9
• A polysaccharide or protein layer called a
capsule covers many prokaryotes
Ò 莢膜 -- 由多醣或蛋白質組成
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Fig. 27-4
200 nm
Capsule
10
• Some prokaryotes have fimbriae (also called
attachment pili), which allow them to stick to
their substrate or other individuals in a colony
• Sex pili are longer than fimbriae and allow
prokaryotes to exchange DNA
Ò 緣毛 / 附著菌毛
Ò 性菌毛 / 線毛 –- 較長 / 具有交換DNA功能
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Fig. 27-5
Fimbriae
200 nm
11
Motility
Ò 移動性
• Most motile bacteria propel themselves by
flagella that are structurally and functionally
different from eukaryotic flagella
Ò 藉由鞭毛擺動移動/運動
• In a heterogeneous environment, many
bacteria exhibit taxis, the ability to move
toward or away from certain stimuli
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 27-6
Flagellum
Filament
50 nm
Cell wall
Hook
Basal apparatus
Plasma
membrane
12
Fig. 27-6a
Filament
Cell wall
Hook
Basal apparatus
Plasma
membrane
Fig. 27-6b
50 nm
Prokaryotic flagellum (TEM)
13
Internal and Genomic Organization
Ò 內部構造
• Prokaryotic cells usually lack complex
compartmentalization Ò 缺少複雜分隔
• Some prokaryotes do have specialized
membranes that perform metabolic functions
Ò 針對代謝功能特化出的內膜系統
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Fig. 27-7
1 µm
0.2 µm
Respiratory
membrane
Thylakoid
membranes
(a) Aerobic prokaryote Ò好氧菌
(b) Photosynthetic prokaryote
Ò光合成細菌
14
Fig. 27-7a
0.2 µm
Respiratory
membrane
(a) Aerobic prokaryote
Fig. 27-7b
1 µm
Thylakoid
membranes
(b) Photosynthetic prokaryote
15
• The prokaryotic genome has less DNA than the
eukaryotic genome Ò 與真核生物相比較少DNA的基因體
• Most of the genome consists of a circular
chromosome Ò 環狀的染色體
• Some species of bacteria also have smaller
rings of DNA called plasmids
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Fig. 27-8
Chromosome
Plasmids
1 µm
16
• The typical prokaryotic genome is a ring of
DNA that is not surrounded by a membrane
and that is located in a nucleoid region
Ò 不具包覆基因體的核
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Reproduction and Adaptation
Ò 增殖與適應
• Prokaryotes reproduce quickly by binary
fission and can divide every 1–3 hours
Ò 典型增殖為二分裂
• Many prokaryotes form metabolically inactive
endospores, which can remain viable in harsh
conditions for centuries
Ò 內孢子 –- 惡劣環境下的休眠狀態
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17
Fig. 27-9
Endospore
0.3 µm
• Prokaryotes can evolve rapidly because of
their short generation times
Ò 原核生物快速演進的原因 –- 極短的世代時間
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18
Fig. 27-10
EXPERIMENT
Daily serial transfer
0.1 mL
(population sample)
New tube
(9.9 mL
growth
medium)
Old tube
(discarded
after
transfer)
RESULTS
Fitness relative
to ancestor
1.8
1.6
1.4
1.2
1.0
0
5,000
10,000
15,000
Generation
20,000
Fig. 27-10a
EXPERIMENT
Daily serial transfer
0.1 mL
(population sample)
Old tube
(discarded
after
transfer)
New tube
(9.9 mL
growth
medium)
19
Fig. 27-10b
RESULTS
Fitness relative
to ancestor
1.8
1.6
1.4
1.2
1.0
0
5,000
10,000
15,000
Generation
20,000
Concept 27.2: Rapid reproduction, mutation,
and genetic recombination promote genetic
diversity in prokaryotes Ò 增殖 / 變異 / 遺傳多樣性
• Prokaryotes have considerable genetic
variation
• Three factors contribute to this genetic
diversity: Ò 促成高度遺傳變異的主要原因:
– Rapid reproduction Ò 快速增殖 / 累代
– Mutation Ò 易受誘導產生突變
– Genetic recombination Ò 基因 / 遺傳重組
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20
Rapid Reproduction and Mutation
• Prokaryotes reproduce by binary fission, and
offspring cells are generally identical
Ò 二分裂增殖
• Mutation rates during binary fission are low,
but because of rapid reproduction, mutations
can accumulate rapidly in a population
Ò 數量龐大的累代
• High diversity from mutations allows for rapid
evolution
Ò 突變產生的明顯變異 –- 迅速演化
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Genetic Recombination
Ò 基因重組
• Additional diversity arises from genetic
recombination
• Prokaryotic DNA from different individuals can
be brought together by:
a. transformation
b. transduction
c. conjugation
轉型作用
轉導作用
接合增殖
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21
Transformation and Transduction
• A prokaryotic cell can take up and incorporate
foreign DNA from the surrounding environment
in a process called transformation Ò 由外界獲得
• Transduction is the movement of genes
between bacteria by bacteriophages (viruses
that infect bacteria)
Ò 發生於兩菌體間 / 藉由噬菌體傳遞
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Fig. 27-11-1
Phage DNA
A+ B+
A+ B+
Donor
cell
22
Fig. 27-11-2
Phage DNA
A+ B+
A+ B+
Donor
cell
A+
Fig. 27-11-3
Phage DNA
A+ B+
A+ B+
Donor
cell
A+
Recombination
A+
A– B–
Recipient
cell
23
Fig. 27-11-4
Phage DNA
A+ B+
A+ B+
Donor
cell
A+
Recombination
A+
A– B–
Recipient
cell
A+ B–
Recombinant cell
Conjugation and Plasmids
Ò 接合作用與質體
• Conjugation is the process where genetic
material is transferred between bacterial cells
Ò 遺傳物質在兩菌體間的交流
• Sex pili allow cells to connect and pull
together for DNA transfer Ò 性菌毛的聯通
• A piece of DNA called the F factor is required
for the production of sex pili
• The F factor can exist as a separate plasmid
or as DNA within the bacterial chromosome
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24
Fig. 27-12
Sex pilus
1 µm
The F Factor as a Plasmid
• Cells containing the F plasmid function as
DNA donors during conjugation Ò DNA的供應者
• Cells without the F factor function as DNA
recipients during conjugation
• The F factor is transferable during conjugation
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25
Fig. 27-13
F plasmid
Bacterial chromosome
F+ cell
F+ cell
Mating
bridge
F– cell
F+ cell
Bacterial
chromosome
(a) Conjugation and transfer of an F plasmid
Hfr cell
A+
A+
A+
A+
F factor
F– cell
A–
Recombinant
F– bacterium
A–
A–
A+
A+
A–
(b) Conjugation and transfer of part of an Hfr bacterial chromosome
Fig. 27-13-1
F plasmid
Bacterial chromosome
F+ cell
Mating
bridge
F– cell
Bacterial
chromosome
(a) Conjugation and transfer of an F plasmid
26
Fig. 27-13-2
F plasmid
Bacterial chromosome
F+ cell
Mating
bridge
F– cell
Bacterial
chromosome
(a) Conjugation and transfer of an F plasmid
Fig. 27-13-3
F plasmid
Bacterial chromosome
F+ cell
F+ cell
Mating
bridge
F– cell
Bacterial
chromosome
F+ cell
(a) Conjugation and transfer of an F plasmid
27
The F Factor in the Chromosome
• A cell with the F factor built into its
chromosomes functions as a donor during
conjugation
• The recipient becomes a recombinant
bacterium, with DNA from two different cells
• It is assumed that horizontal gene transfer is
also important in archaea
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Fig. 27-13-4
Hfr cell
A+
A+
A+
F factor
F– cell
A–
A–
(b) Conjugation and transfer of part of an Hfr bacterial chromosome
28
Fig. 27-13-5
Hfr cell
A+
A+
A+
A+
F factor
A–
F– cell
A–
A+
A–
(b) Conjugation and transfer of part of an Hfr bacterial chromosome
Fig. 27-13-6
Hfr cell
A+
A+
F factor
F– cell
A+
A+
A–
Recombinant
F– bacterium
A–
A–
A+
A+
A–
(b) Conjugation and transfer of part of an Hfr bacterial chromosome
29
R Plasmids and Antibiotic Resistance
• R plasmids carry genes for antibiotic
resistance Ò 攜帶具有抗生素抗藥性之基因
• Antibiotics select for bacteria with genes that
are resistant to the antibiotics
• Antibiotic resistant strains of bacteria are
becoming more common
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Concept 27.3: Diverse nutritional and metabolic
adaptations have evolved in prokaryotes
• Phototrophs obtain energy from light
• Chemotrophs obtain energy from chemicals
• Autotrophs require CO2 as a carbon source
• Heterotrophs require an organic nutrient to
make organic compounds
• These factors can be combined to give the
four major modes of nutrition:
photoautotrophy, chemoautotrophy,
photoheterotrophy, and chemoheterotrophy
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30
Table 27-1
The Role of Oxygen in Metabolism
• Prokaryotic metabolism varies with respect to
O2:
– Obligate aerobes require O2 for cellular
respiration Ò 絕對好氧性
– Obligate anaerobes are poisoned by O2 and
use fermentation or anaerobic respiration
Ò 絕對厭氧性
– Facultative anaerobes can survive with or
without O2 Ò 兼性厭氧性
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31
Nitrogen Metabolism
Ò 氮代謝
• Prokaryotes can metabolize nitrogen in a
variety of ways
• In nitrogen fixation, some prokaryotes
convert atmospheric nitrogen (N2) to ammonia
(NH3) Ò 固氮反應
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Metabolic Cooperation
Ò 共生性代謝
• Cooperation between prokaryotes allows them
to use environmental resources they could not
use as individual cells Ò 無法以單一細胞利用環境資源
• In the cyanobacterium Anabaena,
photosynthetic cells and nitrogen-fixing cells
called heterocytes exchange metabolic
products
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32
Fig. 27-14
Photosynthetic
cells
Heterocyte
20 µm
• In some prokaryotic species, metabolic
cooperation occurs in surface-coating colonies
called biofilms
Ò 細菌薄層 / 生物膜
http://www2.binghamton.edu/biology/faculty/davies/images/biofilm.jpg
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33
1 µm
Fig. 27-15
Concept 27.4: Molecular systematics is
illuminating prokaryotic phylogeny
• Until the late 20th century, systematists
based prokaryotic taxonomy on phenotypic
criteria
• Applying molecular systematics to the
investigation of prokaryotic phylogeny has
produced dramatic results
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34
Lessons from Molecular Systematics
• Molecular systematics is leading to a
phylogenetic classification of prokaryotes
• It allows systematists to identify major new
clades
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Fig. 27-16
Euryarchaeotes
Crenarchaeotes
UNIVERSAL
ANCESTOR
Nanoarchaeotes
Domain Archaea
Korarcheotes
Domain
Eukarya
Eukaryotes
Proteobacteria
Spirochetes
Cyanobacteria
Domain Bacteria
Chlamydias
Gram-positive
bacteria
35
• The use of polymerase chain reaction (PCR)
has allowed for more rapid sequencing of
prokaryote genomes
• A handful of soil many contain 10,000
prokaryotic species
• Horizontal gene transfer between prokaryotes
obscures the root of the tree of life
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Archaea
• Archaea share certain traits with bacteria and
other traits with eukaryotes
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36
Fig. 27-UN1
Eukarya
Archaea
Bacteria
Table 27-2
37
• Some archaea live in extreme environments
and are called extremophiles
• Extreme halophiles live in highly saline
environments
• Extreme thermophiles thrive in very hot
environments
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Fig. 27-17
38
• Methanogens live in swamps and marshes and
produce methane as a waste product
• Methanogens are strict anaerobes and are
poisoned by O2
• In recent years, genetic prospecting has
revealed many new groups of archaea
• Some of these may offer clues to the early
evolution of life on Earth
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Bacteria
• Bacteria include the vast majority of
prokaryotes of which most people are aware
• Diverse nutritional types are scattered among
the major groups of bacteria
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39
Fig. 27-UN2
Eukarya
Archaea
Bacteria
Proteobacteria
• These gram-negative bacteria include
photoautotrophs, chemoautotrophs, and
heterotrophs
• Some are anaerobic, and others aerobic
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40
Fig. 27-18a
Subgroup: Alpha Proteobacteria
Alpha
Beta
Gamma
Proteobacteria
2.5 µm
Delta
Epsilon
Rhizobium (arrows) inside a
root cell of a legume (TEM)
Subgroup: Beta Proteobacteria
0.5 µm
1 µm
Subgroup: Gamma Proteobacteria
Thiomargarita namibiensis
containing sulfur wastes (LM)
Nitrosomonas (colorized TEM)
Fruiting bodies of
Chondromyces crocatus, a
myxobacterium (SEM)
Subgroup: Epsilon Proteobacteria
B. bacteriophorus
Bdellovibrio bacteriophorus
attacking a larger bacterium
(colorized TEM)
2 µm
5 µm
10 µm
Subgroup: Delta Proteobacteria
Helicobacter pylori (colorized TEM)
Fig. 27-18b
Alpha
Beta
Gamma
Proteobacteria
Delta
Epsilon
41
Subgroup: Alpha Proteobacteria
• Many species are closely associated with
eukaryotic hosts
• Scientists hypothesize that mitochondria
evolved from aerobic alpha proteobacteria
through endosymbiosis
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• Example: Rhizobium, which forms root
nodules in legumes and fixes atmospheric N2
• Example: Agrobacterium, which produces
tumors in plants and is used in genetic
engineering
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42
2.5 µm
Fig. 27-18c
Rhizobium (arrows) inside a root
cell of a legume (TEM)
Subgroup: Beta Proteobacteria
• Example: the soil bacterium Nitrosomonas,
which converts NH4+ to NO2–
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43
1 µm
Fig. 27-18d
Nitrosomonas (colorized TEM)
Subgroup: Gamma Proteobacteria
• Examples include sulfur bacteria such as
Chromatium and pathogens such as Legionella,
Salmonella, and Vibrio cholerae
• Escherichia coli resides in the intestines of
many mammals and is not normally
pathogenic
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44
0.5 µm
Fig. 27-18e
Thiomargarita namibiensis
containing sulfur wastes (LM)
Subgroup: Delta Proteobacteria
• Example: the slime-secreting myxobacteria
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45
10 µm
Fig. 27-18f
Fruiting bodies of
Chondromyces crocatus, a
myxobacterium (SEM)
Fig. 27-18g
5 µm
B. bacteriophorus
Bdellovibrio bacteriophorus
attacking a larger bacterium
(colorized TEM)
46
Subgroup: Epsilon Proteobacteria
•
This group contains many pathogens
including Campylobacter, which causes
blood poisoning, and Helicobacter pylori,
which causes stomach ulcers
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2 µm
Fig. 27-18h
Helicobacter pylori (colorized TEM)
47
Chlamydias / 衣原體
• These bacteria are parasites that live within
animal cells
• Chlamydia trachomatis causes blindness and
nongonococcal urethritis by sexual
transmission
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Fig. 27-18i
CHLAMYDIAS
Chlamydia (arrows) inside an
animal cell (colorized TEM)
5 µm
2.5 µm
SPIROCHETES
Leptospira, a spirochete
(colorized TEM)
Two species of Oscillatoria,
filamentous cyanobacteria (LM)
1 µm
GRAM-POSITIVE BACTERIA
5 µm
50 µm
CYANOBACTERIA
Streptomyces, the source of
many antibiotics (colorized SEM)
Hundreds of mycoplasmas
covering a human fibroblast
cell (colorized SEM)
48
2.5 µm
Fig. 27-18j
Chlamydia (arrows) inside an
animal cell (colorized TEM)
Spirochetes / 螺旋體
• These bacteria are helical heterotrophs
• Some, such as Treponema pallidum, which
causes syphilis, and Borrelia burgdorferi,
which causes Lyme disease, are parasites
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49
5 µm
Fig. 27-18k
Leptospira, a spirochete
(colorized TEM)
Cyanobacteria / 藍綠菌
• These are photoautotrophs that generate O2
• Plant chloroplasts likely evolved from
cyanobacteria by the process of endosymbiosis
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50
50 µm
Fig. 27-18l
Two species of Oscillatoria,
filamentous cyanobacteria (LM)
Gram-Positive Bacteria
• Gram-positive bacteria include
– Actinomycetes, which decompose soil
– Bacillus anthracis, the cause of anthrax / 炭疽
– Clostridium botulinum, the cause of botulism
– Some Staphylococcus and Streptococcus, which
can be pathogenic
– Mycoplasms, the smallest known cells / 類菌質體
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51
5 µm
Fig. 27-18m
Streptomyces, the source of many
antibiotics (colorized SEM)
1 µm
Fig. 27-18n
Hundreds of mycoplasmas
covering a human fibroblast
cell (colorized SEM)
52
Concept 27.5: Prokaryotes play crucial roles
in the biosphere
• Prokaryotes are so important to the biosphere
that if they were to disappear the prospects
for any other life surviving would be dim
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Chemical Cycling
• Prokaryotes play a major role in the recycling
of chemical elements between the living and
nonliving components of ecosystems
• Chemoheterotrophic prokaryotes function as
decomposers, breaking down corpses, dead
vegetation, and waste products
• Nitrogen-fixing prokaryotes add usable
nitrogen to the environment
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53
• Prokaryotes can sometimes increase the
availability of nitrogen, phosphorus, and
potassium for plant growth
• Prokaryotes can also “immobilize” or
decrease the availability of nutrients
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Uptake of K by plants (mg)
Fig. 27-19
1.0
0.8
0.6
0.4
0.2
0
No
Strain 1 Strain 2 Strain 3
bacteria
Soil treatment
54
Ecological Interactions
• Symbiosis is an ecological relationship in
which two species live in close contact: a
larger host and smaller symbiont
• Prokaryotes often form symbiotic relationships
with larger organisms
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• In mutualism, both symbiotic organisms
benefit
• In commensalism, one organism benefits
while neither harming nor helping the other in
any significant way
• In parasitism, an organism called a parasite
harms but does not kill its host
• Parasites that cause disease are called
pathogens
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Fig. 27-20
Concept 27.6: Prokaryotes have both harmful
and beneficial impacts on humans
• Some prokaryotes are human pathogens, but
others have positive interactions with humans
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Pathogenic Prokaryotes
• Prokaryotes cause about half of all human
diseases
• Lyme disease is an example
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Fig. 27-21
5 µm
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Fig. 27-21a
Deer tick
Fig. 27-21b
5 µm
Borrelia burgdorferi (SEM)
58
Fig. 27-21c
Lyme disease rash
• Pathogenic prokaryotes typically cause
disease by releasing exotoxins or endotoxins
• Exotoxins cause disease even if the
prokaryotes that produce them are not
present
• Endotoxins are released only when bacteria
die and their cell walls break down
• Many pathogenic bacteria are potential
weapons of bioterrorism
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Prokaryotes in Research and Technology
• Experiments using prokaryotes have led to
important advances in DNA technology
• Prokaryotes are the principal agents in
bioremediation, the use of organisms to
remove pollutants from the environment
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• Some other uses of prokaryotes:
– Recovery of metals from ores
– Synthesis of vitamins
– Production of antibiotics, hormones, and
other products
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Fig. 27-22
(b)
(c)
(a)
Fig. 27-22a
(a)
61
Fig. 27-22b
(b)
Fig. 27-22c
(c)
62
Fig. 27-UN3
Fimbriae
Cell wall
Circular chromosome
Capsule
Sex pilus
Internal
organization
Flagella
Fig. 27-UN4
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Fig. 27-UN5
You should now be able to:
1. Distinguish between the cell walls of grampositive and gram-negative bacteria
2. State the function of the following features:
capsule, fimbriae, sex pilus, nucleoid,
plasmid, and endospore
3. Explain how R plasmids confer antibiotic
resistance on bacteria
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4. Distinguish among the following sets of terms:
photoautotrophs, chemoautotrophs,
photoheterotrophs, and chemoheterotrophs;
obligate aerobe, facultative anaerobe, and
obligate anaerobe; mutualism,
commensalism, and parasitism; exotoxins
and endotoxins
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