Download 1 Lectures 28 and 29 – applications of recombinant DNA technology

Lectures 28 and 29 – applications of recombinant
technology
C
I. Manipulate gene of interest
A. site-directed mutagenesis
A
T
A
C
A
2. after
replication
in cell
1. fill in with DNA
polym erase, seal
nick with liga se
B. in vitro mutagenesis by PCR
DNA
and
C
G
T
A
1. anneal primer 1
C
A
2. first cycle of
PCR
C
A
3. after many
rounds of PCR
C
G
why?
C. reporter transgenes
- fuse regulatory sequences to reporter
- use lacZ (encodes b-galactosidase), gfp (jelly fish green fluorescent protein) or
luciferase (fire fly enzyme)
- eg: ceh-23::gfp
(
Pceh-23
Pgfp
)
(
ceh-23
+
gfp
Pceh-23
)
Head
Tail
gfp
- why?
II. Transgenic organisms - introduce gene from one species into genome of second species
A. transgenic bacteria – generally introduce gene on plasmid
hgh
+
- why?
hgh
recombinan t
HGH
recombinan t
not for use HGH
by ath let es not for use recombinan t
HGH
by ath let es not for use recombinan t
HGH
by ath let es not for use
by ath let es
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B. transgenic yeast
1. how?
+
2. uses of yeast transformation
C. transgenic plants
1. can be transformed by particle gun or by Agrobacterium Ti plasmid
2. Ti plasmid:
T-DNA
normal
Agrobacterium
infection
T-DNA
transfer
gall
+
ori
T-DNA
T-DNA
3. engineering plants
Agrobacterium with
engineered Ti plasmid
transgenic
plant
T-DNA
regenerate
plantlets
4. types of engineered plants
a. luciferase (from firefly)
leaf
"punches"
b. b-galactosidase (from E. coli)
growing
tissue
T-DNA
c. glyphosate resistant (from Salmonella)
d. Bt toxin (from Bacillus thuringensis)
infected
cell
Genetically modified plants
Crop
soybean
field corn
cotton
Modification
herbicide resistant
herbicide resistant, Bt
Bt
US
93%
86%
93%
5. GM (= genetically modified) plants
a. many plants engineered to improve yield, etc.
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World
77%
26%
49%
b. potential benefits
- improved yield
- improved crops
- reduced herbicide and pesticide use
c. concerns
D. transgenic mice – why? reporters, models for human genetic disorders, etc.
1. DNA into embryonic stem cells
2. vector usually modified retrovirus
ES cells from
black mouse
genex
neoR
DNA
embryo from
white mouse
implant
pseudopregnant
mouse
X
chimeric mice
selection
(neomycin)
E. “transgenic” humans – gene therapy
1. can recombinant DNA technology be used to correct genetic disorders?
2. two general types
a. germ line therapy – not done, problems:
b. somatic – try to provide wild-type gene in some somatic cells
- provide wild-type gene to some cells, restores production of
protein in specific cells
3. approaches to somatic therapy – use different vectors
a. retrovirus – inserts into chromosome at random
b. adenovirus – persists extrachromosomally
c. adeno-related virus – advantages of adenovirus
d. lentivirus – less prone to insertional mutagenesis
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F. an aside - cloning whole organisms
1. still technically challenging
- most embryos fail/die early
- many of those that develop have
defects
2. can you clone yourself?
produce
cloned animal
remove nucleus
fuse cell
G. another aside - stem cells
1. what are they?
a. share two characteristics
i. unspecialized cells, renew through long periods through division
ii. can be induced to differentiate
2. three types
a. embryonic
i.
trophoblast - outer layer of cells, generally
ii.
not part of embryo
blastocoel - cavity
inner cell mass - becomes embryo,
embryonic stem cells derived from this
b. adult
i.
ii. produce type of tissue in which they reside
c. induced pluripotent stem cells (iPS)
i. introducing 4 genes into differentiated cells can cause them to
revert to a stem-like state
ii. may cause elevated risk of producing tumors; still being
investigated
3. potential benefits
a. possibly used to treat number of different diseases
egs: Parkinsons, diabetes, heart disease, spinal cord injury,
duchenne muscular dystrophy, Huntington's, amyotrophic lateral
sclerosis, multiple sclerosis, etc.
embryonic
adult
iPS
4. restrictions on research
a. privately funded, no restrictions
b. publicly funded, can use but not derive embryonic stem cells
for more info, see: http://www.nih.gov/news/stemcell/primer.htm
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IV. Reverse genetics
A. what is it?
1. forward genetics
2. reverse genetics
B. how do you get the mutation?
- use knock-out techniques
C. yeast knock-out mutations
ampR
ori
1.
yfg
2.
ura-
3.
ura+
YIp
ura3
yfg
select for ura+
yfg
uraD. C. elegans (also flies, mammals, plants, etc.)
1. RNA mediated interference (RNAi)
2. prepare double-stranded RNA from gene of interest
3. inject germ
cells or early embryo
4. what it does:
select for urayfg
E. mouse knock-out
1. similar to procedure for generating transgenic mice
homology
to gene X
neoR
ES cells from
black mouse
clone
+
DNA
tk
X
gene X
chromosome
selection
(neomycin
and ganciclovir)
implant
pseudopregnant
mouse
embryo from
white mouse
neoR
gene X inactive
chimeric mice
F. CRISPR (= Clustered Regularly Interspaced Short Palindromic Repeats): A different
way to perform gene therapy or knock out gene
1. Bacterial defense mechanism, produces a nuclease that clips DNA
complementary to a guide RNA
2. Possible uses:
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3. How CRISPR/Cas9 works
A bacterial nuclease (Cas9) can
be guided to any DNA sequence using
a complementary RNA sequence
(guide RNA)
The nuclease creates a doublestrand break (DSB) that can be repaired
by:
Non-homologye end joining to disrupt a gene or
Homologous recombination (HR) to insert a new/corrected gene
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