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Innovating integrated research at all levels of biological organization: structuring the research process in virtual labs over the entire life cycle of the activity By: Christos Arvanitidis and Anstassios Oulas Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Crete Annual EGI Conference 06-08 Aprli 2016, Amsterdam, The Netherlands LifeWatch - biodiversity is... LifeWatchGreece LifeWatch - challenges (Questions) LifeWatchGreece LifeWatch - challenges (Ifrastructure) LifeWatchGreece LifeWatchGreece - What makes it? • Human Network • Physical Installations • Equipment (mostly hardware) • Software LifeWatchGreece LifeWatchGreece - e-infrastructure LifeWatchGreece Science Conceptual workflow Repeatability Observation Pattern recognition Attribution Data (evidence) Knowledge LifeWatchGreece Experim entation Example: Community ecology vs biomedicine workflow…. Ecology: Pattern observed: f (species x stations ~ environmental vars x stations) Biomedicine: Pattern observed: f (phenomics (ind. x sickness) ~ genetic vars ~ environmental vars) LifeWatchGreece Example: Community ecology vs biomedicine workflow…. Ecology: Biomedicine: LifeWatchGreece But how about if we start the real integration in biology? LifeWatchGreece But how about if we start the real integration in biology? Example from IMGs LifeWatchGreece And if we need to go way beyond…. LifeWatch - related ESFRIs challenges LifeWatchGreece What might be the 10y challenges? 1. Brake the language barriers between disciplines and domains (challenges in data, metadata, standards, protocols, ontologies) 2. Continue to produce the data we need (petabyte period will be short) but not at the expense of quality…. 3. Maximize access to information and data resources (data mining) 4. Create the workflows that can integrate data sources from different disciplines and visualize them (challenges in analysis framework) 5. Seek for HPC sources that may handle these data (EGI, cloud) and their analysis (challenges in hardware and computing capacity) 6. Create the framework for interpretation of the results 7. Create the “go-in-between” communities, starting from the “trading zones”: a new era of polymaths or “encyclopedists”? LifeWatchGreece How to communicate these 10y challenges? 1. This is the science universe that changes the way we currently operate 2. Communicate the challenges to the scientific community 3. Promote the challenges to the politicians and policy makers 4. Show how they can change the everyday life of the citizens 5. How to start? LifeWatchGreece Thank you http://www.lifewatchgreece.eu [email protected] LifeWatchGreece