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Title Author Journal Stable frequency of HIV-1 transmitted drug resistance in patients at the time of primary infection over 1996-2006 in France Chaix, Marie-Laure AIDS - March 2009, Volume 23, Issue 6 Dynamic patterns of human immunodeficiency virus type 1 integrase gene evolution in patients failing raltegravir-based salvage therapies Lazzarin, Adriano AIDS - February 2008, Volume 23, Issue 4 A randomized trial of therapeutic drug monitoring of protease inhibitors in antiretroviral-experienced, HIV-1infected patients Demeter, Lisa M AIDS - January 2009, Volume 23, Issue 3 A public health model for the molecular surveillance of HIV transmission in San Diego, California Smith, Davey AIDS - January 2009, Volume 23, Issue 2 Antiretroviral combinations implicated in emergence of the L74I and L74V resistance mutations in HIV-1-infected patients Wirden, Marc AIDS - January 2009, Volume 23, Issue 1 Transmission networks of drug resistance acquired in primary/early stage HIV infection Brenner, Bluma G AIDS - November 2008, Volume 22, Issue 18 Silent mutations are selected in HIV-1 reverse transcriptase and affect enzymatic efficiency Harrigan, P Richard AIDS - November 2008, Volume 22, Issue 18 Viral resuppression and detection of drug resistance following interruption of a suppressive non-nucleoside reverse transcriptase inhibitor-based regimen Fox, Zoe AIDS - November 2008, Volume 22, Issue 17 Differential impact of adherence on long-term treatment response among naive HIV-infected individuals Lima, Viviane AIDS - November 2008, Volume 22, Issue 17 Phenotypic impact of resistance mutations on etravirine susceptibility in HIV patients with prior failure to nonnucleoside analogues Poveda, Eva AIDS - November 2008, Volume 22, Issue 17 Bayesian network analyses of resistance pathways against efavirenz and nevirapine Deforche, Koena AIDS - October 2008, Volume 22, Issue 16 Detection of HIV drug resistance during antiretroviral treatment and clinical progression in a large European cohort study Cozzi-Lepri, Alessandro AIDS - October 2008, Volume 22, Issue 16 Prevalence of Nevirapine-Associated Resistance Mutations after Single Dose Prophylactic Treatment among Antenatal Clinic Attendees in North Rift Kenya Michael Kiptoo AIDS Research and Human Retroviruses volume 24, Issue 12 Appreciating HIV Type 1 Diversity: Subtype Differences in Env Rebecca M. Lynch AIDS Research and Human Retroviruses March 2009, Volume 25, Issue 3 Virological Suppression Reduces Clinical Progression in Patients with Multiclass-Resistant HIV Type 1 Laura Bracciale AIDS Research and Human Retroviruses March 2009, Volume 25, Issue 3 A Comparison of Interpretation by Three Different HIV Type 1 Genotypic Drug Resistance Algorithms Using Sequences from Non-Clade B HIV Type 1 Strains Abraham Joseph Kandathil AIDS Research and Human Retroviruses March 2009, Volume 25, Issue 3 The Changing Trend of HIV Type 1 Subtypes in Nairobi Raphael W. Lihana AIDS Research and Human Retroviruses March 2009, Volume 25, Issue 3 Analysis of pol Integrase Sequences in Diverse HIV Type 1 Strains Using a Prototype Genotyping Assay Susan H. Eshleman AIDS Research and Human Retroviruses March 2009, Volume 25, Issue 3 Non-B HIV Type 1 Subtypes among Men Who Have Sex with Men in Rome, Italy M. Giuliani AIDS Research and Human Retroviruses February 2009, Volume 25, Issue 2 Enfuvirtide (T-20) Resistance-Related Mutations in HIV Type 1 Subtypes B, C, and F Isolates from Brazilian Patients Failing HAART A.C.A. Oliveira AIDS Research and Human Retroviruses February 2009, Volume 25, Issue 2 Genotypic Characterization of CRF01_AE env Genes Derived from Human Immunodeficiency Virus Type 1Infected Patients Residing in Central Thailand Piraporn Utachee AIDS Research and Human Retroviruses Volume 25, Issue 1 Non-B HIV Type 1 Subtypes among Men Who Have Sex with Men in Rome, Italy M Giuliani AIDS Research and Human Retroviruses Volume 25, Issue 1 Molecular Phylogenetics of Nearly FullLength HIV Type 2 envelope Gene Sequences from West India Sushama Jadhav AIDS Research and Human Retroviruses Volume 25, Issue 1 An 11-Year Surveillance of HIV Type 1 Subtypes in Nagoya, Japan Seiichiro Fujisaki AIDS Research and Human Retroviruses Volume 25, Issue 1 Genetic Analysis of HIV Type 1 Strains from Newly Infected Untreated Patients in Cyprus: High Genetic Diversity and Low Prevalence of Drug Resistance Ioanna Kousiappa AIDS Research and Human Retroviruses Volume 25, Issue 1 Identification and Characterization of CRF02_AG, CRF06_cpx, and CRF09_cpx Recombinant Subtypes in Mali, West Africa Hiromi Imamichi AIDS Research and Human Retroviruses Volume 25, Issue 1 Dynamics of NRTI Resistance Mutations during Therapy Interruption Maria Trignetti AIDS Research and Human Retroviruses Volume 25, Issue 1 Polymorphism, Recombination, and Mutations in HIV Type 1 gag-Infecting Peruvian Male Sex Workers Carlos Augusto Yabar AIDS Research and Human Retroviruses Volume 24, Issue 11 HIV Type 1 Subtype C Drug Resistance among Pediatric and Adult South African Patients Failing Antiretroviral Therapy Visva Pillay AIDS Research and Human Retroviruses Volume 24, Issue 11 High Prevalence of Genetically Similar HIV-1 Recombinants among Infected Sex Workers in Nairobi, Kenya Allison M Land AIDS Research and Human Retroviruses Volume 24, Issue 11 High Divergence within the Major HIV Type 1 Subtype B Epidemic in Panama Sara Ahumada-Ruiz AIDS Research and Human Retroviruses Volume 24, Issue 11 First Observation of HIV Type 1 Drug Resistance Mutations in Algeria Salima Bouzeghoub AIDS Research and Human Retroviruses Volume 24, Issue 11 Identification of Subtype B, Multiple Circulating Recombinant Forms and Unique Recombinants of HIV Type 1 in an MSM Cohort in China Wanhai Wang AIDS Research and Human Retroviruses Volume 24, Issue 10 Impact of Human Immunodeficiency Virus Type 1 Reverse Transcriptase Inhibitor Drug Resistance Mutation Interactions on Phenotypic Susceptibility Vinod Trivendi AIDS Research and Human Retroviruses Volume 24, Issue 10 Profile of HIV Type 1 Infection and Genotypic Resistance Mutations to Antiretroviral Drugs in Treatment-Naive HIV Type 1-Infected Individuals in Hai Phong, Viet Nam Azumi Ishizaki AIDS Research and Human Retroviruses February 2009, Issue 25, Volume 2 Genotypic Characterization of CRF01_AE env Genes Derived from Human Immunodeficiency Virus Type 1Infected Patients Residing in Central Thailand Piraporn Utachee AIDS Research and Human Retroviruses February 2009, Issue 25, Volume 2 Apricitabine Does Not Select Additional Drug Resistance Mutations in Tissue Culture in Human Immunodeficiency Virus Type 1 Variants Containing K65R, M184V, or M184V plus Thymidine Analogue Mutations Maureen Oliveira Antimicrobial Agents and Chemotherapy April 2009, Volume 53, Issue 4 SC29EK, a Peptide Fusion Inhibitor with Enhanced -Helicity, Inhibits Replication of Human Immunodeficiency Virus Type 1 Mutants Resistant to Enfuvirtide Takeshi Naito Antimicrobial Agents and Chemotherapy March 2009, Volume 53, Issue 3 Virologic Failure in First-Line Human Immunodeficiency Virus Therapy with a CCR5 Entry Inhibitor, Aplaviroc, plus a Fixed-Dose Combination of LamivudineZidovudine: Nucleoside Reverse Transcriptase Inhibitor Resistance Regardless of Envelope Tropism James F. Demarest Antimicrobial Agents and Chemotherapy March 2009, Volume 53, Issue 3 Virologic Failure in Therapy-Naïve Subjects on Aplaviroc plus LopinavirRitonavir: Detection of Aplaviroc Resistance Requires Clonal Analysis of Envelope Kathryn M. Kitrinos Antimicrobial Agents and Chemotherapy March 2009, Volume 53, Issue 3 Nucleoside and Nucleotide Analogs Select in Culture for Different Patterns of Drug Resistance in Human Immunodeficiency Virus Types 1 and 2 Michel L Ntemgwa Antimicrobial Agents and Chemotherapy February 2009, Volume 53, Issue 2 Both a Protective and a Deleterious Role for the L76V Mutation Tartaglia et al. Antimicrobial Agents and Chemotherapy Volume 53 Drug Resistance Mutation Profile and Accumulation Kinetics in Human Immunodeficiency Virus-Positive Individuals Infected with Subtypes B and F Failing Highly Active Antiretroviral Therapy Are Influenced by Different Viral Codon Usage Patterns A Waleria-Aleixo Antimicrobial Agents and Chemotherapy December 2008, Volume 52, Issue 12 Genotypic Resistance Analysis of the Virological Response to FosamprenavirRitonavir in Protease InhibitorExperienced Patients in CONTEXT and TRIAD Clinical Trials Anne-Genevieve Marcelin Antimicrobial Agents and Chemotherapy December 2008, Volume 52, Issue 12 Darunavir Inhibitory Quotient Predicts the 48-Week Virological Response to Darunavir-Based Salvage Therapy in Human Immunodeficiency VirusInfected Protease Inhibitor-Experienced Patients Jose Molto Antimicrobial Agents and Chemotherapy November 2008, Volume 52, Issue 11 Virologic Response to LopinavirRitonavir-Based Antiretroviral Regimens in a Multicenter International Clinical Cohort: Comparison of Genotypic Interpretation Scores Philip Grant Antimicrobial Agents and Chemotherapy November 2008, Volume 52, Issue 11 Are mutations in HIV type-1 reverse transcriptase 245 codon predictive of abacavir hypersensitivity reaction? Laura Bracciale Antiviral Therapy - 2009, Volume 14, Issue 1 Compilation and prevalence of mutations associated with resistance to non-nucleoside reverse transcriptase inhibitors Lotke Tambuyzer Antiviral Therapy - 2009, Volume 14, Issue 1 Genetic barriers for integrase inhibitor drug resistance in HIV type-1 B and CRF02_AG subtypes Almoustapha-Issiaka Maïga Antiviral Therapy - 2009, Volume 14, Issue 1 Broad advances in understanding HIV resistance to antiretrovirals: report on the XVII International HIV Drug Resistance Workshop Mark Mascolini Antiviral Therapy - Volume 13, Issue 8 The status of HIV-1 resistance to antiretroviral drugs in sub-Saharan Africa Raph L Hamers Antiviral Therapy - Volume 13, Issue 8 Variability in the plasma concentration of efavirenz and nevirapine is associated with genotypic resistance after treatment interruption Laila Darwich Antiviral Therapy - Volume 13, Issue 7 Raltegravir susceptibility and fitness progression of HIV type-1 integrase in patients on long-term antiretroviral therapy Maria Jose Buzon Antiviral Therapy - Volume 13, Issue 7 HIV Drug Resistance Tests: An Update on Methods for Calculating Phenotypic Fold Change from a Viral Genotype Nobel A. Bellosillo Clinical Infectious Diseases - March 2009, Volume 48, S2 Long-Term Trends of HIV Type 1 Drug Resistance Prevalence among Antiretroviral Treatment–Experienced Patients in Switzerland Viktor von Wyl Clinical Infectious Diseases - April 2009, Volume 48, Issue 7 HIV Drug Resistance Tests: An Update on Methods for Calculating Phenotypic Fold Change from a Viral Genotype Nobel A Bellosillo Clinical Infectious Diseases - March 2009, Volume 48, Issue 5 Single-Dose Nevirapine to Prevent Mother-to-Child Transmission of HIV Type 1: Balancing the Benefits and Risks John W Mellors Clinical Infectious Diseases - February 2008, Volume 48, Issue 4 Emergence of Multiclass Drug– Resistance in HIV-2 in AntiretroviralTreated Individuals in Senegal: Implications for HIV-2 Treatment in Resouce-Limited West Africa Clinical Infectious Diseases - February 2008, Volume 48, Issue 4 Geoffrey S Gottlieb Persistent Minority K103N Mutations among Women Exposed to Single-Dose Nevirapine and Virologic Response to Nonnucleoside Reverse-Transcriptase Inhibitor–Based Therapy Ashraf Coovadia Clinical Infectious Diseases - February 2009, Volume 48, Issue 4 Persistent Minority K103N Mutations among Women Exposed to Single-Dose Nevirapine and Virologic Response to Nonnucleoside Reverse-Transcriptase Inhibitor–Based Therapy Ashraf Coovadia Clinical Infectious Diseases - February 2009, Volume 48, Issue 4 Emergence of Multiclass Drug– Resistance in HIV-2 in AntiretroviralTreated Individuals in Senegal: Implications for HIV-2 Treatment in Resouce-Limited West Africa Geoffrey S. Gottlieb Clinical Infectious Diseases - February 2009, Volume 48, Issue 4 The Management of TreatmentExperienced HIV-Infected Patients: New Drugs and Drug Combinations Lucy E Wilson Clinical Infectious Diseases - January 2009, Volume 48, Issue 2 Minority Quasispecies of DrugResistant HIV-1 That Lead to Early Therapy Failure in Treatment-Naive and -Adherent Patients Karin J Metzner Clinical Infectious Diseases - January 2009, Volume 48, Issue 2 Nonnucleotide Reverse-Transcriptase Inhibitors and Treatment Interruption Mark J DiNubile Clinical Infectious Diseases - December 2008, Volume 47, Issue 12 Impact of reverse transcriptase resistance on the efficacy of TMC125 (etravirine) with two nucleoside reverse transcriptase inhibitors in protease inhibitor-naïve, nonnucleoside reverse transcriptase inhibitor-experienced patients: study TMC125-C227 K Ruxrungtham HIV Medicine - October 2008, Volume 9, Issue 10 Drug resistance profiles for the HIV integrase gene in patients failing raltegravir salvage therapy C Charpentier HIV Medicine - October 2008, Volume 9, Issue 9 Difference in drug resistance patterns between minor HIV-1 populations in cerebrospinal fluid and plasma T Bergroth HIV Medicine - January 2009, Volume 10, Issue 2 Relationship of Injection Drug Use, Antiretroviral Therapy Resistance, and Genetic Diversity in the HIV-1 pol Gene Kowalski, Jeanne JAIDS - April 2009, Volume 50, Issue 4 Changes in Darunavir/r Resistance Score After Previous Failure to Tipranavir/r in HIV-1-Infected MultidrugResistant Patients Spagnuolo, Vincenzo JAIDS - February 2009, Volume 50, Issue 2 Prevalence of Drug-Resistant HIV-1 in Rural Areas of Hubei Province in the People's Republic of China Luo, Minqi JAIDS - January 2009, Volume 50, Issue 1 High Frequency of HIV-1 Dual Infections Among HIV-Positive Individuals in Cameroon, West Central Africa Powell, Rebecca JAIDS - January 2009, Volume 50, Issue 1 Envelope Coreceptor Tropism, Drug Resistance, and Viral Evolution Among Subtype C HIV-1-Infected Individuals Receiving Nonsuppressive Antiretroviral Therapy Kassaye, Seble JAIDS - January 2009, Volume 50, Issue 1 Development of Phenotypic HIV-1 Drug Resistance After Exposure to SingleDose Nevirapine Basson, Adriaan JAIDS - December 2008, Volume 49, Issue 5 National Survey for Drug-Resistant Variants in Newly Diagnosed Antiretroviral Drug-Naive Patients With HIV/AIDS in South Korea: 1999-2005 Choi, Ju-veon JAIDS - November 2008, Volume 49, Issue 3 The Relationship Between Resistance and Adherence in Drug-Naive Individuals Initiating HAART Is Specific to Individual Drug Classes Tam, Lily W Y JAIDS - November 2008, Volume 49, Issue 3 The Impact of Different Definitions on the Estimated Rate of Transmitted HIV Drug Resistance in the United Kingdom Green, Hannah JAIDS - October 2008, Volume 49, Issue 2 Transmission Cluster of Multiclass Highly Drug-Resistant HIV-1 Among 9 Men Who Have Sex With Men in Seattle/King County, WA, 2005-2007 Buskin, Susan E JAIDS - October 2008, Volume 49, Issue 2 Discordant genotypic interpretation and phenotypic role of protease mutations in HIV-1 subtypes B and G Andre F Santos Journal of Antimicrobial Chemotherapy January 2009, Volume 63, Issue 3 Mutations associated with virological response to darunavir/ritonavir in HIV-1infected protease inhibitor-experienced patients Diane Descamps Journal of Antimicrobial Chemotherapy Volume 63, Issue 3 High rate of early virological failure with the once-daily tenofovir/lamivudine/nevirapine combination in naive HIV-1-infected patients D Rey Journal of Antimicrobial Chemotherapy January 2009, Volume 63, Issue 2 Detection of low-frequency K103N mutants after unstructured discontinuation of efavirenz in the presence of the CYP2B6 516 TT polymorphism Ana Garcia-Diaz Journal of Antimicrobial Chemotherapy December 2008, Volume 62, Issue 6 Development and optimization of an internally controlled dried blood spot assay for surveillance of human immunodeficiency virus type-1 drug resistance Andrew J Buckton Journal of Antimicrobial Chemotherapy December 2008, Volume 62, Issue 6 HIV-2 integrase gene polymorphism and phenotypic susceptibility of HIV-2 clinical isolates to the integrase inhibitors raltegravir and elvitegravir in vitro B Roquebert Journal of Antimicrobial Chemotherapy November 2008, Volume 62, Issue 5 Impact of gag mutations on selection of darunavir resistance mutations in HIV-1 protease Sidonie Lambert-Niclot journal of Antimicrobial Chemotherapy November 2008, Volume 62, Issue 5 Prevalence of etravirine-associated mutations in clinical samples with resistance to nevirapine and efavirenz J M Llibre Journal of Antimicrobial Chemotherapy Volume 62, Issue 5 The antiherpetic drug acyclovir inhibits HIV replication and selects the V75I reverse transcriptase multidrug resistance mutation. McMahon MA Journal of Biological Chemotherapy November 2008, Volume 283, Issue 46 Evolution of genotypic resistance to enfuvirtide in HIV-1 isolates from different group M subtypes Kris Covens Journal of Clinical Virology - April 2009, Volume 44, Issue 4 HIV-1 drug resistance genotyping quality assessment: Results of the ENVA7 Genotyping Proficiency Programme A Pandit Journal of Clinical Virology - December 2008, Volume 43, Issue 4 Tipranavir resistance associated mutations in protease inhibitor-naïve patients with HIV-1 subtype A/E infection Somnuek Sungkanuparph Journal of Clinical Virology - November 2008, Volume 43, Issue 3 Predicting the Response to Combination Antiretroviral Therapy: Retrospective Validation of geno2pheno-THEO on a Large Clinical Database André Altmann Journal of Infectious Diseases - April 2009, Volume 199, Issue 7 Low-Abundance Drug-Resistant HIV-1 Variants: Finding Significance in an Era of Abundant Diagnostic and Therapeutic Options Robert W. Shafer Journal of Infectious Diseases - March 2009, Volume 199, Issue 5 Low-Abundance Drug-Resistant Viral Variants in Chronically HIV-Infected, Antiretroviral Treatment–Naive Patients Significantly Impact Treatment Outcomes Birgitte B. Simen Journal of Infectious Diseases - March 2009, Volume 199, Issue 5 Improvement in the determination of HIV-1 tropism using the V3 gene sequence and a combination of bioinformatic tools Natalia Chueca Journal of Medical Virology - Volume 81, Issue 5 High prevalence of non-B HIV-1 subtypes in seamen and their sexual partners in Croatia Martha Kathleen Ramirez-Piedad Journal of Medical Virology - Volume 81, Issue 4 Prediction of the virological response to etravirine in clinical practice: Comparison of three genotype algorithms Laurent Cotte Journal of Medical Virology - Volume 81, Issue 4 Genetic variability of human immunodeficiency virus-1 in Bahia state, Northeast, Brazil: High diversity of HIV genotypes Joana Paixao Monteiro Journal of Medical Virology - Volume 81, Issue 3 Selection of drug-resistant HIV-1 during the early phase of viral decay is uncommon in treatment-naïve patients initiated on a three- or four-drug antiretroviral regimen including lamivudine Tobias Bergroth Journal of Medical Virology - Volume 81, Issue 1 PL-100, a novel HIV-1 protease inhibitor displaying a high genetic barrier to resistance: An in vitro selection study Serge Dandache Journal of Medical Virology - Volume 80, Issue 12 Natural polymorphisms in HIV-1 protease: Impact on effectiveness of a first-line lopinavir-containing Karen Champenois Journal of Medical Virology - Volume 80, Issue 11 antiretroviral therapy regimen Characterization of a Human Immunodeficiency Virus Type 1 V3 Deletion Mutation That Confers Resistance to CCR5 Inhibitors and the Ability To Use Aplaviroc-Bound Receptor Katrina M. Nolan Journal of Virology - April 2009, Volume 83, Issue 8 The Human Immunodeficiency Virus Type 1 Nonnucleoside Reverse Transcriptase Inhibitor Resistance Mutation I132M Confers Hypersensitivity to Nucleoside Analogs Zandrea Ambrose Journal of Virology - April 2009, Volume 83, Issue 8 HR-2 Mutations in Human Immunodeficiency Virus Type 1 gp41 Restore Fusion Kinetics Delayed by HR1 Mutations That Cause Clinical Resistance to Enfuvirtide Neelanjana Ray Journal of Virology - April 2009, Volume 83, Issue 7 Non-Cleavage Site Gag Mutations in Amprenavir-Resistant Human Immunodeficiency Virus Type 1 (HIV-1) Predispose HIV-1 to Rapid Acquisition of Amprenavir Resistance but Delay Development of Resistance to Other Protease Inhibitors Manabu Aoki Journal of Virology - April 2009, Volume 83, Issue 7 Demonstration of Sustained DrugResistant Human Immunodeficiency Virus Type 1 Lineages Circulating among Treatment-Naïve Individuals Stéphane Hué Journal of Virology - March 2009, Volume 83, Issue 6 Human Immunodeficiency Virus Type 1 Population Genetics and Adaptation in Newly Infected Individuals M. Kearney Journal of Virology - March 2009, Volume 83, Issue 6 In Vivo Fitness Cost of the M184V Mutation in Multidrug-Resistant Human Immunodeficiency Virus Type 1 in the Absence of Lamivudine Roger Paredes Journal of Virology - February 2009, Volume 83, Issue 4 Template Usage Is Responsible for the Preferential Acquisition of the K65R Reverse Transcriptase Mutation in Subtype C Variants of Human Immunodeficiency Virus Type 1 Dimitrios Coutsinos Journal of Virology - February 2009, Volume 83, Issue 4 Baseline Resistance of Primary Human Immunodeficiency Virus Type 1 Strains to the CXCR4 Inhibitor AMD3100 Jessamina E.Harrison Journal of Virology - December 2008, Volume 82, Issue 23 Minority Human Immunodeficiency Virus Type 1 Variants in AntiretroviralNaive Persons with Reverse Transcriptase Codon 215 Revertant Mutations Yumi Mitsuya Journal of Virology - November 2008, Volume 82, Issue 21 Resistance Mutations in Human Immunodeficiency Virus Type 1 Integrase Selected with Elvitegravir Confer Reduced Susceptibility to a Wide Range of Integrase Inhibitors Olivia Goethals Journal of Virology - November 2008, Volume 82, Issue 21 Selection of HIV Variants with Signature Genotypic Characteristics during Heterosexual Transmission Manish Sagar The Journal of Infectious Diseases February 2009, Volume 199, Issue 4 Phylogenetic Reconstruction of Transmission Events from Individuals with Acute HIV Infection: Toward MoreRigorous Epidemiological Definitions Alison E Brown The Journal of Infectious Diseases February 2009, Volume 199, Issue 3 Two-Months-off, Four-Months-on Antiretroviral Regimen Increases the Risk of Resistance, Compared with Continuous Therapy: A Randomized Trial Involving West African Adults Christine Danel The Journal of Infectious Diseases January 2009, Volume 199, Issue 1 Sensitivity of Phenotypic Susceptibility Analyses for Nonthymidine Nucleoside Analogues Conferred by K65R or M184V in Mixtures with Wild-Type HIV-1 Mark R Underwood The Journal of Infectious Diseases January 2009, Volume 199, Issue 1