A SAS/IML® Program for Mapping QTL in Line Crosses
... Zeng 1997). Fortunately, it can be easily evaluated using Monte Carlo integration by sampling X from its posterior distribution, i.e., ...
... Zeng 1997). Fortunately, it can be easily evaluated using Monte Carlo integration by sampling X from its posterior distribution, i.e., ...
A Bayesian Network Classification Methodology for Gene
... the laws of probability that once a conditional distribution is associated with each node, specifying the probability that the node assumes a given value conditioned on the values assumed by the node’s parents, a joint distribution for the entire set of random variables is uniquely determined. Algor ...
... the laws of probability that once a conditional distribution is associated with each node, specifying the probability that the node assumes a given value conditioned on the values assumed by the node’s parents, a joint distribution for the entire set of random variables is uniquely determined. Algor ...
Single-copy nuclear genes resolve the phylogeny of the
... evolutionary relationship to any other insect order is unconfirmed. They have been controversially proposed as the closest relatives of the flies, based on rDNA, and a possible homeotic transformation in the common ancestor of both groups that would make the reduced forewings of Strepsiptera homolog ...
... evolutionary relationship to any other insect order is unconfirmed. They have been controversially proposed as the closest relatives of the flies, based on rDNA, and a possible homeotic transformation in the common ancestor of both groups that would make the reduced forewings of Strepsiptera homolog ...
e-GRASP: an integrated evolutionary and GRASP
... each of three potential SNP classifications, ultraconserved, well-conserved, or less-conserved, based on the site’s evolutionary rate being zero, between zero and one, or greater than one, respectively. The example presented in Fig. 2 shows rs1041981, which has been implicated in multiple GWAS pheno ...
... each of three potential SNP classifications, ultraconserved, well-conserved, or less-conserved, based on the site’s evolutionary rate being zero, between zero and one, or greater than one, respectively. The example presented in Fig. 2 shows rs1041981, which has been implicated in multiple GWAS pheno ...
temperature effects, and localization of a mobile genetic element Dm
... strains in which the modified expression of ri was stably inherited through more than 150 generations. There are two temperature sensitive phases within the pupal stage, one at l l3 ± 5 h and the other at 149 ± 5 h after egg laying. The line derived from temperature change at 113 ± 5 h, ri Tl 13, ha ...
... strains in which the modified expression of ri was stably inherited through more than 150 generations. There are two temperature sensitive phases within the pupal stage, one at l l3 ± 5 h and the other at 149 ± 5 h after egg laying. The line derived from temperature change at 113 ± 5 h, ri Tl 13, ha ...
... (MAF) of the SNP and the size of the study. This is because the probability that a SNP with a given p-value is truly associated with the phenotype depends not only on how unlikely that p-value is under H0 (which is the same for all tests) but also on how unlikely it is under the alternative hypothes ...
Handout - 7 - Misc - Topics for discussion at June 2016
... or qualitative) of the analyte of interest. We thought of this class of tests as “EIAlike” and in the absence of an existing short acronym to describe their constituents, we borrowed “EIA” to provide this meaning in the Short Name and used Immunoassay in the Long Common Name to signal that this meth ...
... or qualitative) of the analyte of interest. We thought of this class of tests as “EIAlike” and in the absence of an existing short acronym to describe their constituents, we borrowed “EIA” to provide this meaning in the Short Name and used Immunoassay in the Long Common Name to signal that this meth ...
Towards an accurate identification of mosaic genes and
... For instance, 16S rRNA or 23S rRNA genes may also undergo HGT, but they seem to do it at a relatively low rate (38). The tree T must be rooted with respect to the available evolutionary evidence. If no plausible evidence for rooting T exists, the outgroup or midpoint strategies can be used (6). The ...
... For instance, 16S rRNA or 23S rRNA genes may also undergo HGT, but they seem to do it at a relatively low rate (38). The tree T must be rooted with respect to the available evolutionary evidence. If no plausible evidence for rooting T exists, the outgroup or midpoint strategies can be used (6). The ...
Towards an accurate identification of mosaic genes and partial
... For instance, 16S rRNA or 23S rRNA genes may also undergo HGT, but they seem to do it at a relatively low rate (38). The tree T must be rooted with respect to the available evolutionary evidence. If no plausible evidence for rooting T exists, the outgroup or midpoint strategies can be used (6). The ...
... For instance, 16S rRNA or 23S rRNA genes may also undergo HGT, but they seem to do it at a relatively low rate (38). The tree T must be rooted with respect to the available evolutionary evidence. If no plausible evidence for rooting T exists, the outgroup or midpoint strategies can be used (6). The ...
Likelihood Based Clustering (LiBaC) for Codon Models, a method
... dimensional structure of the protein. Two problems have hindered the application of fixed effect models: (i) for many genes there is no obvious a priori criterion by which sites can be partitioned into different groups, and (ii) there is often uncertainty about how to partition sites even when some ...
... dimensional structure of the protein. Two problems have hindered the application of fixed effect models: (i) for many genes there is no obvious a priori criterion by which sites can be partitioned into different groups, and (ii) there is often uncertainty about how to partition sites even when some ...
20071217161016301
... They were able to reproduce Delsuc et al’s tree when they removed Xenoturbella, hemichordate and starfish. This lead Bourlat et al. to conclude that Delsuc et al’s inference was an artifact of sparse taxonsampling / model mis-specification. (They used a concatenated analysis WAG+F+) ...
... They were able to reproduce Delsuc et al’s tree when they removed Xenoturbella, hemichordate and starfish. This lead Bourlat et al. to conclude that Delsuc et al’s inference was an artifact of sparse taxonsampling / model mis-specification. (They used a concatenated analysis WAG+F+) ...
Clustering Genes using Heterogeneous Data Sources
... Clustering of gene expression data is a standard exploratory technique used to identify closely related genes. Many other sources of data are also likely to be of great assistance in the analysis of gene expression data. Such sources include proteinprotein interaction data, transcription factor and ...
... Clustering of gene expression data is a standard exploratory technique used to identify closely related genes. Many other sources of data are also likely to be of great assistance in the analysis of gene expression data. Such sources include proteinprotein interaction data, transcription factor and ...
Intelligent Systems and Bioinformatics Laboratory
... Note: In order to successfully run the applet, please make sure that proper java plug-in is installed in the browser. For more information on requirements for Onto-Tools click here. ...
... Note: In order to successfully run the applet, please make sure that proper java plug-in is installed in the browser. For more information on requirements for Onto-Tools click here. ...
生物信息学主要英文术语及释义
... E value. The number of different alignents with scores equivalent to or better than S that are expected to occur in a database search by chance. The lower the E value, the more significant the score. In a database similarity search, the probability that an alignment score as good as the one found be ...
... E value. The number of different alignents with scores equivalent to or better than S that are expected to occur in a database search by chance. The lower the E value, the more significant the score. In a database similarity search, the probability that an alignment score as good as the one found be ...
B. Liu, A. Gupta and R. Jain Using Temporal Semantics for Live Media Stream Queries , International Conference on Semantics of a Networked World - Semantics of sequence and time dependent data Munich, Germany, March 2006.
... some relation N . With no loss of generality, we can assume that the id attribute of nodes is globally unique, so that nodes are represented by their ids. We only consider DAGs with unlabeled edges; we also assume that the children of any node of the data DAG are unordered. Henceforth, unless explic ...
... some relation N . With no loss of generality, we can assume that the id attribute of nodes is globally unique, so that nodes are represented by their ids. We only consider DAGs with unlabeled edges; we also assume that the children of any node of the data DAG are unordered. Henceforth, unless explic ...
Statistical methods to detect genotype-phenotype
... data from 1472 men, while accounting for genetic confounding. The methods of interest are fitting a linear regression model to a reduced sample of 1274 men, and fitting a linear mixed model to the full sample, with maximal oxygen uptake as response, and age and activity index as covariates. The cova ...
... data from 1472 men, while accounting for genetic confounding. The methods of interest are fitting a linear regression model to a reduced sample of 1274 men, and fitting a linear mixed model to the full sample, with maximal oxygen uptake as response, and age and activity index as covariates. The cova ...
Essential Knowledge 1.B.1
... • It is constructed by using evidence from systematics, a discipline that focuses on classifying organisms and their evolutionary relationships. Its tools include fossils, morphology, genes, and molecular evidence. • Taxonomy is an ordered division of organisms into categories based on a set of char ...
... • It is constructed by using evidence from systematics, a discipline that focuses on classifying organisms and their evolutionary relationships. Its tools include fossils, morphology, genes, and molecular evidence. • Taxonomy is an ordered division of organisms into categories based on a set of char ...
SNP Set Analysis for Detecting Disease Association Using Exon
... individuals are fixed to be 209 and 488, respectively, which reflects the population prevalence of this disease. The 697 individuals were from seven different sources: Denver-Chinese, Han-Chinese, Japanese, Luhya, Yoruba, CEPH, and Tuscan. Through principal component analysis on about 1000 common va ...
... individuals are fixed to be 209 and 488, respectively, which reflects the population prevalence of this disease. The 697 individuals were from seven different sources: Denver-Chinese, Han-Chinese, Japanese, Luhya, Yoruba, CEPH, and Tuscan. Through principal component analysis on about 1000 common va ...
Expander6.3.1_workshop_handouts
... The goal of clustering is to partition the genes into distinct sets such that genes that share common expression patterns are assigned to the same cluster, while genes assigned to different clusters should have "non-similar" expression patterns. Here we will use the CLICK algorithm to perform the cl ...
... The goal of clustering is to partition the genes into distinct sets such that genes that share common expression patterns are assigned to the same cluster, while genes assigned to different clusters should have "non-similar" expression patterns. Here we will use the CLICK algorithm to perform the cl ...
Predicting Cancer Susceptibility from Single-Nucleotide
... several studies of microarray data, including our prior work with Multiple Myeloma. Therefore, for the present work we use linear SVMs. Experimenting with SNP data using other kernel functions is a direction for future work. Each SNP feature in our data set takes one of three possible non-numerical ...
... several studies of microarray data, including our prior work with Multiple Myeloma. Therefore, for the present work we use linear SVMs. Experimenting with SNP data using other kernel functions is a direction for future work. Each SNP feature in our data set takes one of three possible non-numerical ...
Phylogeny of elasmobranchs based on LSU and SSU ribosomal
... test makes so many simplifying assumptions that it is highly prone to Type 2 errors (Antezana, 2003; Goldman et al., 2000). Thus, we included both tests as guides in assessing the actual level of support for the alternate (i.e., anatomy-based) hypotheses. In parametric bootstrapping, the null hypoth ...
... test makes so many simplifying assumptions that it is highly prone to Type 2 errors (Antezana, 2003; Goldman et al., 2000). Thus, we included both tests as guides in assessing the actual level of support for the alternate (i.e., anatomy-based) hypotheses. In parametric bootstrapping, the null hypoth ...
Use of Taxonomy in Risk Assessment of Micro
... the micro-organism. It is presumed that the reviewer has a limited, but not expert, understanding of taxonomy, or at least has access to resources that can provide a basic background in this subject. The document may also be useful for applicants and other stakeholders in the regulatory process. Mor ...
... the micro-organism. It is presumed that the reviewer has a limited, but not expert, understanding of taxonomy, or at least has access to resources that can provide a basic background in this subject. The document may also be useful for applicants and other stakeholders in the regulatory process. Mor ...
Publishing life science data as linked open data: the case study of
... Data technologies have given rise to the Web of Data: a Web of things in the world, described by data on the Web5 . The Web of Data extents current Web to a global data space connecting data from diverse domains. The Web of Data is impelled by the current trend towards an open Web. The open data mov ...
... Data technologies have given rise to the Web of Data: a Web of things in the world, described by data on the Web5 . The Web of Data extents current Web to a global data space connecting data from diverse domains. The Web of Data is impelled by the current trend towards an open Web. The open data mov ...
Methods to Evolve Legal Phenotypes
... based on penalizing illegal phenotypes) to five test functions. Michalewicz et. al. (1996) describe the use of ‘behavioral memory’ and other penalty-based approaches in GAs to evolve different engineering designs. Schoenauer and Michalewicz (1997) describe the use of a repair method in a GA to evolv ...
... based on penalizing illegal phenotypes) to five test functions. Michalewicz et. al. (1996) describe the use of ‘behavioral memory’ and other penalty-based approaches in GAs to evolve different engineering designs. Schoenauer and Michalewicz (1997) describe the use of a repair method in a GA to evolv ...