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What happened to my genes? Insights on gene family dynamics
What happened to my genes? Insights on gene family dynamics

Brooker Chapter 14
Brooker Chapter 14

... Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or display ...
A Rapid Screening Method to Detect Nonsense and Frameshift
A Rapid Screening Method to Detect Nonsense and Frameshift

... difficult to differentiate colors among colonies on a single plate, comparisons from one plate to another were difficult to interpret. Colors obtained from samples with frameshifts in APC showed clear differences between the blue and the intermediate blue colonies. Colors obtained from samples with ...
When replication travels on damaged templates: bumps and blocks
When replication travels on damaged templates: bumps and blocks

... requires that unique enzymatic dynamics on each strand. Following a single priming event, the leading-strand template can be synthesized in a continuous, processive 5 –3 manner. However, the lagging strand template is synthesized in a direction opposite to the progress of the ongoing fork, and req ...
Regulatory sequences
Regulatory sequences

... Recruitment of CIITA to MHC-II promoters. A prototypical MHC-II promoter (HLA-DRA) is represented schematically with the W, X, X2, and Y sequences conserved in all MHC-II, Ii, and HLA-DM promoters. RFX, X2BP, NF-Y, and an as yet undefined W-binding protein bind cooperatively to these sequences and a ...
software development and application in bioinformatics: single
software development and application in bioinformatics: single

... This thesis incorporates two projects, one in assessing software availability and application in detecting SNPs for next generation sequencing, and the other in software engineering of a social networking environment for use in biomedical informatics. SNP Detection: The study on variations in DNA se ...
sample - Test Bank Team
sample - Test Bank Team

... 40) What is meant by the term genome? Answer: The genome is all the DNA carried in an organism. Section: 1.4 41) Who owns transgenic organisms? Answer: Once produced, a patent can be obtained on a living organism, thereby offering exclusive use of the transgenic organism to the patent holder. Sectio ...
sample - Test Bank Exam
sample - Test Bank Exam

... 19) What does one call a mutation that occurs in a DNA sequence that changes the amino acid specified by that sequence? Answer: nonsynonymous or replacement substitution Section: 5.2 Skill: Knowledge/Comprehension 20) The process of producing proteins from DNA involves two different steps. What is t ...
A novel gene encoding a 54 kDa polypeptide is
A novel gene encoding a 54 kDa polypeptide is

... method takes time and can cover only limited types of bacteria, and selection, being a growth-dependent process, may miss out organisms which require different media or temperatures. Polyclonal and monoclonal antibodies have proved to be more reliable and easy to use for detection of target organism ...
Carcinomas with DNA Mismatch Repair Deficiency
Carcinomas with DNA Mismatch Repair Deficiency

... The DNA mismatch repair proteins are ubiquitously expressed in normal human tissues, particularly proliferating tissues, and nuclear expression in crypt epithelium and lymphocytes serves as an internal positive control for stain quality. In the setting of HNPCC, most hereditary and second-hit tumor ...
1 Characterization of the p.Q189X nonsense mutation in dpy
1 Characterization of the p.Q189X nonsense mutation in dpy

... Previous findings from Brenner (1974) report the mapping distance between dpy-17 (e164) and unc-32 (e189) to be 2.95 (2.0 - 4.19) m.u. (n = 1136). This number deviates from our reported mapping distance of 14.7 m.u. (n = 1185). It is likely that this deviation arises from the effects of stochasticit ...
Alpha Thalassemia - ARUP Lab Test Directory
Alpha Thalassemia - ARUP Lab Test Directory

... o Nondeletional α-globin mutations may be pathogenic or benign  Both may result in an abnormal protein detectable by Hb evaluation  Pathogenic nondeletional mutations often have a more severe effect than single gene deletions • α-globin gene triplications result in three active α-globin genes on a ...
Digital PCR Analysis of Maternal Plasma for
Digital PCR Analysis of Maternal Plasma for

... Cell-free fetal DNA (cffDNA) in the maternal circulation is a source of fetal genetic material that offers an alternative to sampling chorionic villi or amniocytes for prenatal diagnosis (7 ) and avoids the risk of miscarriage associated with invasive procedures (8 ). Substantial technical challenge ...
Lecture 15
Lecture 15

Microbial DNA qPCR Assays
Microbial DNA qPCR Assays

... The following are representative results for all the qPCR assays. [A] shows the realtime amplification curves of the KPC antibiotic resistance gene qPCR assay. In [B], a standard curve was prepared that shows that the primer efficiency equals 103% (calculated from slope = –3.3236) and the correlatio ...
Point mutation of bacterial artificial chromosomes by ET recombination
Point mutation of bacterial artificial chromosomes by ET recombination

... Gene Expression Program and 1Biochemical Instrumentation Program, European Molecular Biology Laboratory, Meyerhofstraße 1, D-69117 Heidelberg, Germany Received June 2, 2000; revised July 12, 2000; accepted July 18, 2000 ...
Microbial DNA qPCR Assays
Microbial DNA qPCR Assays

... The following are representative results for all the qPCR assays. [A] shows the realtime amplification curves of the KPC antibiotic resistance gene qPCR assay. In [B], a standard curve was prepared that shows that the primer efficiency equals 103% (calculated from slope = –3.3236) and the correlatio ...
CAIcal: A combined set of tools to assess codon usage adaptation
CAIcal: A combined set of tools to assess codon usage adaptation

... codon positions, and the effective number of codons [17]. (ii) The CAI of a DNA sequence or group of sequences. This index measures the adaptation of the synonymous codon usage of a gene to the synonymous codon usage of up to two reference sets that can be chosen by the user. The new features incorp ...
PANTHER version 11: expanded annotation data from Gene
PANTHER version 11: expanded annotation data from Gene

... Evolutionary Relationships, http://pantherdb.org) contains comprehensive information on the evolution and function of protein-coding genes from 104 completely sequenced genomes. PANTHER software tools allow users to classify new protein sequences, and to analyze gene lists obtained from large-scale ...
A Sunflower Helianthinin Gene Upstream Sequence
A Sunflower Helianthinin Gene Upstream Sequence

... the detected binding sites. Below the maps, thin lines indicate the gene sequences included in the different probes used for binding experiments. ...
David Helfgott
David Helfgott

... shared DNA ...
2 Genetic Epidemiology - How to quantify, localize and identify
2 Genetic Epidemiology - How to quantify, localize and identify

... the (maternally inherited) mitochondria. Although most of the human DNA sequence is identical in all individuals, at some loci different versions of the sequence occur. These variants are called alleles. The word allele can refer to a gene variant, but also to versions of a genetic marker or any oth ...
Alpha Thalassemia - Lab Test Directory
Alpha Thalassemia - Lab Test Directory

...  Mutations that result in unstable α-globin protein (eg, Hb Constant Spring) o Nondeletional α-globin mutations may be pathogenic or benign  Both may result in an abnormal protein detectable by Hb evaluation  Pathogenic nondeletional mutations often have a more severe effect than single gene dele ...
Bacterial Transformation and Transfection Bacterial transformation is
Bacterial Transformation and Transfection Bacterial transformation is

... An additional level of selection can be achieved during transformation and transfections. Bacterial cells containing plasmids with the antibiotic resistance gene are selected in bacterial transformations, and cells in an area of M13 infection are recognized as plaques against a lawn of non-infected ...
1992 Genetics Society of America Medal: Maynard V. Olson.
1992 Genetics Society of America Medal: Maynard V. Olson.

... physical map, consisting of overlapping cloned segments and a restriction map derived from these clones, of the entiregenome of Saccharomyces cerevisaae. Maynard Olson was the first to see the possibility and the value of such physical maps. Much of the approach, as well asthe technology, of modern ...
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Genomics

Genomics is a discipline in genetics that applies recombinant DNA, DNA sequencing methods, and bioinformatics to sequence, assemble, and analyze the function and structure of genomes (the complete set of DNA within a single cell of an organism). Advances in genomics have triggered a revolution in discovery-based research to understand even the most complex biological systems such as the brain. The field includes efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping. The field also includes studies of intragenomic phenomena such as heterosis, epistasis, pleiotropy and other interactions between loci and alleles within the genome. In contrast, the investigation of the roles and functions of single genes is a primary focus of molecular biology or genetics and is a common topic of modern medical and biological research. Research of single genes does not fall into the definition of genomics unless the aim of this genetic, pathway, and functional information analysis is to elucidate its effect on, place in, and response to the entire genome's networks.
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