supplementary information
... Software (version 1.3) which normalizes array signals using a robust multiarray averaging (RMA) algorithm. Normalized data were analyzed using Transcriptome Analysis Console (TAC) 3.0 Software (Affymetrix). An unpaired t-test was applied to identify differentially expressed transcript genes between ...
... Software (version 1.3) which normalizes array signals using a robust multiarray averaging (RMA) algorithm. Normalized data were analyzed using Transcriptome Analysis Console (TAC) 3.0 Software (Affymetrix). An unpaired t-test was applied to identify differentially expressed transcript genes between ...
Beyond Co-expression: Gene Network Inference
... • What is the contribution of each regulatory motif (or the TF that binds to that motif) to the expression level of the genes containing the motif? • Given a set of known or putative regulatory motifs, identify all genes that contain the motif in their promoter region. • For a single expression expe ...
... • What is the contribution of each regulatory motif (or the TF that binds to that motif) to the expression level of the genes containing the motif? • Given a set of known or putative regulatory motifs, identify all genes that contain the motif in their promoter region. • For a single expression expe ...
An example of HDLSS: Microarray data
... are studying. The labeled probes are allowed to bind to complementary DNA strands on the slides. The slides are put into a scanning microscope that can measure the brightness of each fluorescent dot; brightness reveals how much of a specific DNA fragment is present, an indicator of how active it is. ...
... are studying. The labeled probes are allowed to bind to complementary DNA strands on the slides. The slides are put into a scanning microscope that can measure the brightness of each fluorescent dot; brightness reveals how much of a specific DNA fragment is present, an indicator of how active it is. ...
Gene Section THBS2 (thrombospondin-2) Atlas of Genetics and Cytogenetics in Oncology and Haematology
... TSP2 binds to extracellular matrix ligands including, transforming growth factor-beta-1, histidine rich glycoprotein, TSG6, heparin, matrix metalloproteinase2, and heparan sulfate proteoglycans. TSP2 binds to cell surface receptors including CD36, CD47, LDL receptor-related protein-1 (via calreticul ...
... TSP2 binds to extracellular matrix ligands including, transforming growth factor-beta-1, histidine rich glycoprotein, TSG6, heparin, matrix metalloproteinase2, and heparan sulfate proteoglycans. TSP2 binds to cell surface receptors including CD36, CD47, LDL receptor-related protein-1 (via calreticul ...
Gene Section TFE3 (transcription factor E3) Atlas of Genetics and Cytogenetics
... N-term PRCC with the proline rich sequence fused to most of TFE3, including the acidic transcriptional activation domain, the helix-loop-helix, and the leucine zipper; the reciprocal TFE3-PRCC is expressed; it is to be noted that the normal TFE3 transcript is lost in ...
... N-term PRCC with the proline rich sequence fused to most of TFE3, including the acidic transcriptional activation domain, the helix-loop-helix, and the leucine zipper; the reciprocal TFE3-PRCC is expressed; it is to be noted that the normal TFE3 transcript is lost in ...
Methods - BioMed Central
... using 20 random samplings of 50 features out of the total selected features for each dataset. Note the much higher content of 1st order genes in the ALL-MLL and Breast Cancer datasets as compared to the Central Nervous System dataset. This is counteracted by the higher content of 4th and 3rd order g ...
... using 20 random samplings of 50 features out of the total selected features for each dataset. Note the much higher content of 1st order genes in the ALL-MLL and Breast Cancer datasets as compared to the Central Nervous System dataset. This is counteracted by the higher content of 4th and 3rd order g ...
Homework 6 - public.iastate.edu
... (j) Find estimates of the posterior probability of differential expression for each gene. Give the p-values along with the estimated posterior probabilities of differential expression for the 5 genes with the smallest p-values and the 5 genes with the largest p-values. 2. Suppose you will test 20,00 ...
... (j) Find estimates of the posterior probability of differential expression for each gene. Give the p-values along with the estimated posterior probabilities of differential expression for the 5 genes with the smallest p-values and the 5 genes with the largest p-values. 2. Suppose you will test 20,00 ...
Worksheet Control Mechanisms
... Not all proteins are required at all times Not all proteins are diminished quickly Waste of the cell’s resources if all genes were transcribed and translated at all times By having some genes under regulation, the cell can manage its resources as needed ...
... Not all proteins are required at all times Not all proteins are diminished quickly Waste of the cell’s resources if all genes were transcribed and translated at all times By having some genes under regulation, the cell can manage its resources as needed ...
Yr7 - NVT Online
... (T7AL.2DL) linking them in the middle Alternate disjunction of the pentavalent caused the wheat-alien translocation chromosomes move to the same pole at Anaphase I LR and YR showed pseudo-linkage despite not being present on the same chromosome Test of hypothesis: GISH the meiotic cells showing two ...
... (T7AL.2DL) linking them in the middle Alternate disjunction of the pentavalent caused the wheat-alien translocation chromosomes move to the same pole at Anaphase I LR and YR showed pseudo-linkage despite not being present on the same chromosome Test of hypothesis: GISH the meiotic cells showing two ...
Comparative Sequence Analysis between Human and Mouse
... We aligned promoter sequences of human and mouse. The distribution of alignment scores had two peaks; a major peak around 1000, and a minor peak lower than 100. When we aligned non-orthologous promoters generated by shuffling pairs, the score distribution precisely fit the minor peak of orthologous ...
... We aligned promoter sequences of human and mouse. The distribution of alignment scores had two peaks; a major peak around 1000, and a minor peak lower than 100. When we aligned non-orthologous promoters generated by shuffling pairs, the score distribution precisely fit the minor peak of orthologous ...
When Is a Genome Project Finished?
... Match the correct term with each definition or select the best answer for each question. 1. A series of codons from a single strand of DNA sequence which can be "read" in three different ways, depending on whether one starts at the first nucleotide position, the second or third Reading Frame (RF) Al ...
... Match the correct term with each definition or select the best answer for each question. 1. A series of codons from a single strand of DNA sequence which can be "read" in three different ways, depending on whether one starts at the first nucleotide position, the second or third Reading Frame (RF) Al ...
5. Differential Gene Expression
... nervous system. also expressed in different cells within these tissues ...
... nervous system. also expressed in different cells within these tissues ...
No Slide Title
... 1) CPSF binds AAUAAA in hnRNA 2) CStF binds; CFI, CFII bind in between 3) PAP (PolyA polymerase) binds & cleaves 10-35 b 3’ to ...
... 1) CPSF binds AAUAAA in hnRNA 2) CStF binds; CFI, CFII bind in between 3) PAP (PolyA polymerase) binds & cleaves 10-35 b 3’ to ...
DOSAGE COMPENSATION Reading
... is expressed only very early during the X-inactivation process. If an X chromosome carries a deletion of the Tsix promoter (therefore does not express Tsix), then that chromosome is always chosen for inactivation. The model is this: before the choice, Xist and Tsix are expressed from both X chromoso ...
... is expressed only very early during the X-inactivation process. If an X chromosome carries a deletion of the Tsix promoter (therefore does not express Tsix), then that chromosome is always chosen for inactivation. The model is this: before the choice, Xist and Tsix are expressed from both X chromoso ...
Transcription
... Mediator is required for transcription from most Pol II dependent promoters in yeast – sometimes referred to as being a GTF itself ...
... Mediator is required for transcription from most Pol II dependent promoters in yeast – sometimes referred to as being a GTF itself ...
Section 2: Energy Flow in Ecosystems
... • One kind of DNA sequence that can be bound by an activator is called an enhancer. • Enhancers are often located thousands of bases away from the promoter. • A loop in the DNA forms as the factors interact at the promoter site. • Each factor may also affect other factors. ...
... • One kind of DNA sequence that can be bound by an activator is called an enhancer. • Enhancers are often located thousands of bases away from the promoter. • A loop in the DNA forms as the factors interact at the promoter site. • Each factor may also affect other factors. ...
Supporting Information Legends Figure S1. Characterization of the
... phosphorylated MAPKs (pMPK3 and pMPK6) after treatments with water, OGs or elf18 in Col-0 and ein2-5 seedlings were determined by immunoblot analysis using a commercial antibody generated against the human homologs of these MAPKs (α-p44/p42-ERK) (top panel). Levels of MPK3 and MPK6 total proteins we ...
... phosphorylated MAPKs (pMPK3 and pMPK6) after treatments with water, OGs or elf18 in Col-0 and ein2-5 seedlings were determined by immunoblot analysis using a commercial antibody generated against the human homologs of these MAPKs (α-p44/p42-ERK) (top panel). Levels of MPK3 and MPK6 total proteins we ...
RNA, Transcription, Translation
... – RNA, Transcription, Translation RNA Go to http://www.dnaftb.org/dnaftb/21/concept/index.html Read the text and answer the following questions 1. Where is RNA commonly found? ____________________________________________ 2. Describe what is meant by the “central dogma” in biology. __________________ ...
... – RNA, Transcription, Translation RNA Go to http://www.dnaftb.org/dnaftb/21/concept/index.html Read the text and answer the following questions 1. Where is RNA commonly found? ____________________________________________ 2. Describe what is meant by the “central dogma” in biology. __________________ ...
ZNF232: structure and expression analysis of a novel human C2H2
... the amino terminal, where a ¢nger associated motif, the Khelical leucine-rich SCAN/LeR domain [12,13] is recognized (aa 49^130), and the carboxy terminal zinc ¢nger region, characterized by ¢ve consecutive repeats of the C2 H2 type (aa 278^410). A putative nucleus localization signal (NLS; aa sequen ...
... the amino terminal, where a ¢nger associated motif, the Khelical leucine-rich SCAN/LeR domain [12,13] is recognized (aa 49^130), and the carboxy terminal zinc ¢nger region, characterized by ¢ve consecutive repeats of the C2 H2 type (aa 278^410). A putative nucleus localization signal (NLS; aa sequen ...