tAIg = w
... Second, a recent study showed that in S. cerevisiae the promoters of many of the tRNA genes have a low predicted affinity to the nucleosome, suggesting a constitutive expression with little transcriptional regulation capacity (6). Thus, for fully sequenced genomes, the relative concentrations of the ...
... Second, a recent study showed that in S. cerevisiae the promoters of many of the tRNA genes have a low predicted affinity to the nucleosome, suggesting a constitutive expression with little transcriptional regulation capacity (6). Thus, for fully sequenced genomes, the relative concentrations of the ...
The Zebrafish Model Organism Database
... record associated with specific experimental conditions. Information about Fish records (genotype, background, and STRs when applicable) can be found on ZFIN Fish record pages and in downloads files. Data from different model organism databases is currently annotated to records having varying degree ...
... record associated with specific experimental conditions. Information about Fish records (genotype, background, and STRs when applicable) can be found on ZFIN Fish record pages and in downloads files. Data from different model organism databases is currently annotated to records having varying degree ...
14.1 The lacI Gene Encodes a Diffusible Repressor
... adjacent. The action of the lac repressor on the lac operon is a trans-effect. A regulatory protein, such as the lac repressor, is called a trans-acting factor. In contrast, a cis-acting element is a DNA segment that must be adjacent to the gene(s) that it regulates, and it is said to have a cis-eff ...
... adjacent. The action of the lac repressor on the lac operon is a trans-effect. A regulatory protein, such as the lac repressor, is called a trans-acting factor. In contrast, a cis-acting element is a DNA segment that must be adjacent to the gene(s) that it regulates, and it is said to have a cis-eff ...
Hd6, a rice quantitative trait locus involved in photoperiod
... CK2. First, high-resolution linkage analysis with 2,807 segregating plants narrowed the Hd6 locus to a 26.4-kb genomic region. In this region, we found only one EST (C10214), which showed high homology with the CK2␣ gene of Arabidopsis and maize. Second, the CK2␣ allele of Nipponbare has a premature ...
... CK2. First, high-resolution linkage analysis with 2,807 segregating plants narrowed the Hd6 locus to a 26.4-kb genomic region. In this region, we found only one EST (C10214), which showed high homology with the CK2␣ gene of Arabidopsis and maize. Second, the CK2␣ allele of Nipponbare has a premature ...
Simultaneous mutation scanning for gross deletions
... Primers were designed to amplify all 79 exons of the DMD gene (the entire 30 UTR is not covered), two alternative promoters (purkinje and cortical) and two exons of the myelin protein zero gene (MPZ) located at 1q22 to control for whole gene deletions or duplications. In all cases, primers were desi ...
... Primers were designed to amplify all 79 exons of the DMD gene (the entire 30 UTR is not covered), two alternative promoters (purkinje and cortical) and two exons of the myelin protein zero gene (MPZ) located at 1q22 to control for whole gene deletions or duplications. In all cases, primers were desi ...
A GO annotation is
... An ontology formally represents knowledge as a set of concepts within a domain, and the relationships among those concepts. It can be used to reason about the entities within that domain and may be used to describe the domain. A Controlled vocabularies provide a way to organize knowledge for subseq ...
... An ontology formally represents knowledge as a set of concepts within a domain, and the relationships among those concepts. It can be used to reason about the entities within that domain and may be used to describe the domain. A Controlled vocabularies provide a way to organize knowledge for subseq ...
Comparative Methods for the Analysis of Gene
... comparative methods presented here are general enough to test a wide range of evolutionary hypotheses using genomicscale data from any organism. ...
... comparative methods presented here are general enough to test a wide range of evolutionary hypotheses using genomicscale data from any organism. ...
Structural basis of PAM-dependent target DNA recognition by the
... the non-target strand1. In agreement with the observed role of the arginine residues in PAM recognition, substitution of Arg 1333 or Arg 1335 with alanine residues resulted in substantially reduced target DNA binding in vitro (Fig. 2d). Furthermore, alanine substitutions of both Arg 1333 and Arg 133 ...
... the non-target strand1. In agreement with the observed role of the arginine residues in PAM recognition, substitution of Arg 1333 or Arg 1335 with alanine residues resulted in substantially reduced target DNA binding in vitro (Fig. 2d). Furthermore, alanine substitutions of both Arg 1333 and Arg 133 ...
The Inheritance of DNA, Chromosomes, and Genes
... There are three billion pairs of these bases in all of your cells. They provide the information necessary to form your body and make it function. The part of DNA that provides the information for what you or any other living thing looks like is found in the arrangement of the four DNA bases. These ...
... There are three billion pairs of these bases in all of your cells. They provide the information necessary to form your body and make it function. The part of DNA that provides the information for what you or any other living thing looks like is found in the arrangement of the four DNA bases. These ...
Stage 4: Tree-building methods: distance
... • Where and when did HIV or other viruses originate? • What is the history of life on earth? • Was the extinct quagga more like a zebra or a horse? ...
... • Where and when did HIV or other viruses originate? • What is the history of life on earth? • Was the extinct quagga more like a zebra or a horse? ...
foreign
... Explain the process of fertilization and implantation in humans. Ans. Fertilisation : Sperm comes in contact with zona pellucida layer of ovum , and induces changes in the membrane that blocks the entry of additional sperms , this induces completion of second meiotic division to form second polar bo ...
... Explain the process of fertilization and implantation in humans. Ans. Fertilisation : Sperm comes in contact with zona pellucida layer of ovum , and induces changes in the membrane that blocks the entry of additional sperms , this induces completion of second meiotic division to form second polar bo ...
Better than Chance: the importance of null models
... I forgot to tell you: this ORF is on the opposite strand of a known 560-codon ribosomal gene. What is the probability of this long an ORF, on opposite strand of known gene? Generative model: simulate random codons using the codon bias of the organism, take reverse complement, and see how often ORFs ...
... I forgot to tell you: this ORF is on the opposite strand of a known 560-codon ribosomal gene. What is the probability of this long an ORF, on opposite strand of known gene? Generative model: simulate random codons using the codon bias of the organism, take reverse complement, and see how often ORFs ...
A Serine/Proline-Rich Protein Is Fused To HRX in t(4
... carrying the t(4;l l), suggesting that the translocation resulted in HRX fusion transcripts (Fig lB, lower panel). Isolation of HRX fusion transcripts from a t(4;lI ) leukemia. To further characterize potential fusion transcripts, a cDNA library was constructed from mRNA isolated from t(4;11)-carryi ...
... carrying the t(4;l l), suggesting that the translocation resulted in HRX fusion transcripts (Fig lB, lower panel). Isolation of HRX fusion transcripts from a t(4;lI ) leukemia. To further characterize potential fusion transcripts, a cDNA library was constructed from mRNA isolated from t(4;11)-carryi ...
Potato chromosomes IX and XI carry genes for resistance to potato
... 1994). The dominant gene Gm was derived from S. gourlayi and confers a different type of PVM resistance to potato than the Rm gene. Upon mechanical inoculation, PVM does not propagate in potato plants carrying Gm. The presence of PVM particles can be detected only incidentally in plants inoculated by ...
... 1994). The dominant gene Gm was derived from S. gourlayi and confers a different type of PVM resistance to potato than the Rm gene. Upon mechanical inoculation, PVM does not propagate in potato plants carrying Gm. The presence of PVM particles can be detected only incidentally in plants inoculated by ...
Warren, ST and Nelson, DL: Trinucleotide repeat expansions in neurological disease. Current Opinion in Neurobiology 3:752-759 (1993).
... individuals. It is a neurodegenerative disease characterized by choreiform movement and progressive intellectual deterioration associated with atrophy of the caudate and putamen. Age-of-onset is usually in middle age (35-50 years), though juvenile cases, which are typically more severe, are occasion ...
... individuals. It is a neurodegenerative disease characterized by choreiform movement and progressive intellectual deterioration associated with atrophy of the caudate and putamen. Age-of-onset is usually in middle age (35-50 years), though juvenile cases, which are typically more severe, are occasion ...
Biosafety Form - University of Idaho
... Yes No - Is from a Risk Group 3 agent. Yes No - Is from a Risk Group 4 agent. Yes No - Is a “Select Agent and Toxin” or other restricted agent. Yes No - Represents more than two-thirds of the genome of a Risk Group 1 or 2 organism. Yes No - Encodes a known oncogene. Yes No - Encodes a control elemen ...
... Yes No - Is from a Risk Group 3 agent. Yes No - Is from a Risk Group 4 agent. Yes No - Is a “Select Agent and Toxin” or other restricted agent. Yes No - Represents more than two-thirds of the genome of a Risk Group 1 or 2 organism. Yes No - Encodes a known oncogene. Yes No - Encodes a control elemen ...
Transduction
... Lecture 13 Gene Manipulation in Bacteria There is no meiosis in bacteria so special techniques have been worked out for manipulating genes in bacteria so that mapping experiments, strain construction, and complementation tests can be done. First, we need a way of getting chromosomal DNA from one cel ...
... Lecture 13 Gene Manipulation in Bacteria There is no meiosis in bacteria so special techniques have been worked out for manipulating genes in bacteria so that mapping experiments, strain construction, and complementation tests can be done. First, we need a way of getting chromosomal DNA from one cel ...
video slide
... • Base deletions- a nucleotide is deleted (removed) from the sequence • Base insertions- a nucleotide is added to the sequence • Insertions and deletions – Can have disastrous effects. – Change the reading frame of the genetic message. ...
... • Base deletions- a nucleotide is deleted (removed) from the sequence • Base insertions- a nucleotide is added to the sequence • Insertions and deletions – Can have disastrous effects. – Change the reading frame of the genetic message. ...
An investigation of conserved coexpression amongst seven
... coexpression network, the higher the correlation to functional interactions • The further the distance between the species for which a conserved coexpression network is calculated, the higher the correlation of the resulting network to functional interactions • Presented conserved coexpression netwo ...
... coexpression network, the higher the correlation to functional interactions • The further the distance between the species for which a conserved coexpression network is calculated, the higher the correlation of the resulting network to functional interactions • Presented conserved coexpression netwo ...
A large scale analysis of resistance gene
... only function so far associated with the NB-ARC is in disease resistance, which is often manifested by a hypersensitive response involving programmed cell death. For plant genes it has become more common to refer to the NB-ARC as the Nucleotide Binding Site domain (NBS). Although the term NBS has be ...
... only function so far associated with the NB-ARC is in disease resistance, which is often manifested by a hypersensitive response involving programmed cell death. For plant genes it has become more common to refer to the NB-ARC as the Nucleotide Binding Site domain (NBS). Although the term NBS has be ...
CDKN2 (p16/MTS1) Gene Deletion or CDK4
... study (4) inasmuch as they are restricted to a region located inbetween the loci examined formerly. The distance between the CDKN2 gene and its flanking loci, MTS2 and 1063. 7 has been estimated to be between 20 and 30 kilobases (7). In this study, breakpoints have been demonstrated within this rela ...
... study (4) inasmuch as they are restricted to a region located inbetween the loci examined formerly. The distance between the CDKN2 gene and its flanking loci, MTS2 and 1063. 7 has been estimated to be between 20 and 30 kilobases (7). In this study, breakpoints have been demonstrated within this rela ...
New Plant Breeding Techniques. Workshop report
... lines because every genetic locus is homozygous (ie two identical forms of the same gene). The progeny obtained from the self-pollination of inbred lines will thus be identical to the parents. When the right combination of inbred parent lines is selected, a first generation hybrid (referred to as th ...
... lines because every genetic locus is homozygous (ie two identical forms of the same gene). The progeny obtained from the self-pollination of inbred lines will thus be identical to the parents. When the right combination of inbred parent lines is selected, a first generation hybrid (referred to as th ...
Full Text PDF - Journal of Integrative Plant Biology
... structures and bulged tissues near ovaries were observed. Low seed setting rate was another obvious character of this mutant. According to statistical analysis, seed setting rate was 18.2%. The percentage of pollen fertility was 62.46%. The process of floral organ morphogenesis was also investigated ...
... structures and bulged tissues near ovaries were observed. Low seed setting rate was another obvious character of this mutant. According to statistical analysis, seed setting rate was 18.2%. The percentage of pollen fertility was 62.46%. The process of floral organ morphogenesis was also investigated ...
Galaxy Basics: DataSet Manipulation inside of Galaxy
... The “cut” job and new dataset should transition from queued -> in progress -> completed/successful. View the dataset’s content in the Galaxy browser by “Poking the eye” (click on the “eye” icon). Notice that there are duplicate entries in the list. Rename the dataset to something more meaningful: “A ...
... The “cut” job and new dataset should transition from queued -> in progress -> completed/successful. View the dataset’s content in the Galaxy browser by “Poking the eye” (click on the “eye” icon). Notice that there are duplicate entries in the list. Rename the dataset to something more meaningful: “A ...
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... As part of this assignment you must develop an alternate implementation of DNA. Instead of using a simple StringBuilder to represent the DNA/enzymes, you’ll use a linked-‐list implementation that m ...
... As part of this assignment you must develop an alternate implementation of DNA. Instead of using a simple StringBuilder to represent the DNA/enzymes, you’ll use a linked-‐list implementation that m ...