LOTUS-DB: an integrative and interactive database for
... from China, USA, Australia and Japan (4, 15). As the initial step to understand the myths of sacred lotus, our group’s genome sequence is acquired by shotgun approach with 94.2 Gb (101) illumina and 4.8 Gb (5.2) 454 sequence. The final genome assembly reaches to 804 Mb, which is 86.5% of the estim ...
... from China, USA, Australia and Japan (4, 15). As the initial step to understand the myths of sacred lotus, our group’s genome sequence is acquired by shotgun approach with 94.2 Gb (101) illumina and 4.8 Gb (5.2) 454 sequence. The final genome assembly reaches to 804 Mb, which is 86.5% of the estim ...
Characterization of the ves Gene, Which is Expressed at a Low
... As has been demonstrated in cspA, cspB and cspG genes, specific control of such gene induction at a low temperature may be achieved by at least three elements: the UP element, cold box and downstream box. The UP element is an A + T-rich sequence located upstream of the "35 hexamer in many bacterial ...
... As has been demonstrated in cspA, cspB and cspG genes, specific control of such gene induction at a low temperature may be achieved by at least three elements: the UP element, cold box and downstream box. The UP element is an A + T-rich sequence located upstream of the "35 hexamer in many bacterial ...
Slide 1
... epithelial cells of the gastrointestinal tract that leads in an elevated urine concentration of these amino acids. High concentration of cystine in the urinary tract leads to the formation of cystine calculi in the kidneys due to low solubility of cystine in acidic environment. Clinically, cystinuri ...
... epithelial cells of the gastrointestinal tract that leads in an elevated urine concentration of these amino acids. High concentration of cystine in the urinary tract leads to the formation of cystine calculi in the kidneys due to low solubility of cystine in acidic environment. Clinically, cystinuri ...
GHS-Express database http://genecanvas.ecgene.net/uploads/Fo
... expressions with a p-value < 10-5 are reported (n=225615) together with the position of the SNP and of the associated gene. “cistransDistance” is 109 when the SNP and gene are ...
... expressions with a p-value < 10-5 are reported (n=225615) together with the position of the SNP and of the associated gene. “cistransDistance” is 109 when the SNP and gene are ...
Exploration 13 - Warner Pacific College
... If the table above is confusing to you, try substituting values for p and q. For example, instead of p sperm/ova with the A allele and q with the a allele, substitute 0.7 sperm/ova with A and 0.3 with a. Then, what percent of offspring with the genotype aa would you expect? The generation offspring ...
... If the table above is confusing to you, try substituting values for p and q. For example, instead of p sperm/ova with the A allele and q with the a allele, substitute 0.7 sperm/ova with A and 0.3 with a. Then, what percent of offspring with the genotype aa would you expect? The generation offspring ...
Induction of the white egg3 mutant phenotype by injection of the
... embryonic genes in the red flour beetle, Tribolium castaneum (Brown et al., 1999). It was also effective in silencing larval haemocyte genes in the flesh fly Sarcophaga (Nishikawa & Natori, 2001). However, efforts to silence late-acting genes using dsRNA injected into early embryos have met with lit ...
... embryonic genes in the red flour beetle, Tribolium castaneum (Brown et al., 1999). It was also effective in silencing larval haemocyte genes in the flesh fly Sarcophaga (Nishikawa & Natori, 2001). However, efforts to silence late-acting genes using dsRNA injected into early embryos have met with lit ...
Is it Good to Share? The Parallel between Information
... HGT replaces lost genes, provides backup copies, allows rapid spread of new beneficial genes and facilitates the emergence of complex genomes. Early organisms needed HGT to get going. When heredity is good (small u) HGT is unfavourable because it creates junk DNA. Large genomes can be maintained suc ...
... HGT replaces lost genes, provides backup copies, allows rapid spread of new beneficial genes and facilitates the emergence of complex genomes. Early organisms needed HGT to get going. When heredity is good (small u) HGT is unfavourable because it creates junk DNA. Large genomes can be maintained suc ...
How to catch epistasis: theory and practice - Montefiore
... Epistasis can be very complex depending on Number of loci in epistasis (if more than one epistatic interaction occurs to cause a disease, then identifying the genes involved and defining their relationships becomes even more ...
... Epistasis can be very complex depending on Number of loci in epistasis (if more than one epistatic interaction occurs to cause a disease, then identifying the genes involved and defining their relationships becomes even more ...
Embryonic growth and the evolution of the mammalian Y
... correct parent-dependent expression rules. Thus, as the conditions for both their initial evolution and spread are relatively relaxed, the mammalian Y chromosome is expected to be an attractor for growth-promoting genes. Data from mice and humans indicate that, as expected and in contrast to the Y o ...
... correct parent-dependent expression rules. Thus, as the conditions for both their initial evolution and spread are relatively relaxed, the mammalian Y chromosome is expected to be an attractor for growth-promoting genes. Data from mice and humans indicate that, as expected and in contrast to the Y o ...
Human housekeeping genes are compact
... Length analysis of HK genes Table 1 compares the lengths of various parts of the HK genes and the background genes. The alignment data was taken from the UCSC genome browser (http://genome. ucsc.edu) [16]. We excluded 322 genes that do not have a unique alignment, as well as 1242 genes that were not ...
... Length analysis of HK genes Table 1 compares the lengths of various parts of the HK genes and the background genes. The alignment data was taken from the UCSC genome browser (http://genome. ucsc.edu) [16]. We excluded 322 genes that do not have a unique alignment, as well as 1242 genes that were not ...
ppt_I
... ~96% (99.999% accurate) 30-40% repetitive elements (eg Alpha satellite, Alu repeats) All known genes, correctly identified (99.74%) heterochromatin ~4% grey ...
... ~96% (99.999% accurate) 30-40% repetitive elements (eg Alpha satellite, Alu repeats) All known genes, correctly identified (99.74%) heterochromatin ~4% grey ...
The Modular Structure and Function of the Wheat HI Promoter with S
... (Fig. 3A), ranging from 80% for wcHl-1 (Yang et al. 1991) to 50% for Arabidopsis Hisl-3 (Ascenzi and Gantt 1997). In a phylogenetic tree, plant HI proteins can be classified into at least three subgroups (Fig. 3B). The first group is HI proteins from dicotyledonous plants. The second group is monoco ...
... (Fig. 3A), ranging from 80% for wcHl-1 (Yang et al. 1991) to 50% for Arabidopsis Hisl-3 (Ascenzi and Gantt 1997). In a phylogenetic tree, plant HI proteins can be classified into at least three subgroups (Fig. 3B). The first group is HI proteins from dicotyledonous plants. The second group is monoco ...
Pair-wise sequence alignment
... that exists within a species • They have a common origin but involve gene duplication events to arise • Purpose of gene duplication is to use sequence to implement a new function • Perform different functions ...
... that exists within a species • They have a common origin but involve gene duplication events to arise • Purpose of gene duplication is to use sequence to implement a new function • Perform different functions ...
Complete genome sequence of Roseophage vB_DshP
... The Roseobacter clade is representative of the most abundant bacteria in the oceans of the world, typically accounting for up to 25% of all marine microbial communities [1–3]. Roseobacters are versatile in their metabolism, employing diverse catalytic processes in a range of environmentally releva ...
... The Roseobacter clade is representative of the most abundant bacteria in the oceans of the world, typically accounting for up to 25% of all marine microbial communities [1–3]. Roseobacters are versatile in their metabolism, employing diverse catalytic processes in a range of environmentally releva ...
Full Article - Pertanika Journal
... plants including banana. For instance, Pei et al. (2007) have isolated, characterised and analysed 12 resistance gene analogues (RGAs) in banana (Musa spp.). In addition, 20 fragments of RGAs have been isolated from wilt resistant Goldfinger (AAAB) banana (Sun et al., 2009). Besides this, Lu et al. ...
... plants including banana. For instance, Pei et al. (2007) have isolated, characterised and analysed 12 resistance gene analogues (RGAs) in banana (Musa spp.). In addition, 20 fragments of RGAs have been isolated from wilt resistant Goldfinger (AAAB) banana (Sun et al., 2009). Besides this, Lu et al. ...
How Should Species Phylogenies Be Inferred from
... that has not itself experienced recombination within the history spanned by the sampled species. Regardless of whether these two sets of sequences have tracked the same or different histories, they define two linkage partitions and should be considered independent estimators of the species phylogeny ...
... that has not itself experienced recombination within the history spanned by the sampled species. Regardless of whether these two sets of sequences have tracked the same or different histories, they define two linkage partitions and should be considered independent estimators of the species phylogeny ...
XWAS (version 1.1): a toolset for chromosome X
... We have implemented a pre-quality control and quality control pipeline that applies standard autosomal GWAS quality control steps as implemented in PLINK (Purcell et al. 2007) and SMARTPCA (Price et al. 2006), as well as procedures that are specific to X. It is recommended (not required) to perform ...
... We have implemented a pre-quality control and quality control pipeline that applies standard autosomal GWAS quality control steps as implemented in PLINK (Purcell et al. 2007) and SMARTPCA (Price et al. 2006), as well as procedures that are specific to X. It is recommended (not required) to perform ...
Indinavir inhibits sterol-regulatory element-binding protein
... increases the risk of cardiovascular complications [5,6]. Recent studies revealed that HAART-related adverse effects are common and persist in patients remaining on ...
... increases the risk of cardiovascular complications [5,6]. Recent studies revealed that HAART-related adverse effects are common and persist in patients remaining on ...
and Light-Chain Variable-Region Gene Families
... VH genes. The Vl sequences from humans belong to several groups, whereas the sequences from chickens, rabbits, cattle, and sheep are restricted to one Vl group. The two remaining species, mice and horses, show a somewhat unusual pattern. In mice, in contrast to numerous VH genes (see fig. 1), there ...
... VH genes. The Vl sequences from humans belong to several groups, whereas the sequences from chickens, rabbits, cattle, and sheep are restricted to one Vl group. The two remaining species, mice and horses, show a somewhat unusual pattern. In mice, in contrast to numerous VH genes (see fig. 1), there ...
Modulation of CTCF Insulator Function by
... of Molecular Cell reveals a novel mechanism in which noncoding RNA transcription and nucleosome repositioning evicts CTCF from a regulatory element to facilitate induction of a nearby gene. The zinc finger protein CTCF binds directly to specific DNA sequences and plays multiple roles in the regulati ...
... of Molecular Cell reveals a novel mechanism in which noncoding RNA transcription and nucleosome repositioning evicts CTCF from a regulatory element to facilitate induction of a nearby gene. The zinc finger protein CTCF binds directly to specific DNA sequences and plays multiple roles in the regulati ...
Stamm revision
... The yeast Saccharomyces cerevisiae has been used extensively to investigate functions of RNA and protein components of the spliceosome. As many of the yeast core splicing factors are evolutionarily conserved with human counterparts, information gained in yeast can be directly applied to humans. The ...
... The yeast Saccharomyces cerevisiae has been used extensively to investigate functions of RNA and protein components of the spliceosome. As many of the yeast core splicing factors are evolutionarily conserved with human counterparts, information gained in yeast can be directly applied to humans. The ...
Slide 1
... – Gene Exchange only occurs between sexually compatible species – Most of the genetic variation is created through recombination (crossing) – Selection is conducted by measuring plant characteristics (yield, grain moisture, etc) – Genes under selection are unknown ...
... – Gene Exchange only occurs between sexually compatible species – Most of the genetic variation is created through recombination (crossing) – Selection is conducted by measuring plant characteristics (yield, grain moisture, etc) – Genes under selection are unknown ...