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4.1 Writing and Balancing Chemical Equations
4.1 Writing and Balancing Chemical Equations

... reactions of this type involve the exchange of ions between ionic compounds in aqueous solution and are sometimes referred to as double displacement, double replacement, or metathesis reactions. These reactions are common in nature and are responsible for the formation of coral reefs in ocean waters ...
lecture notes
lecture notes

... • The specificity of binding depends on the precisely defined arrangement of atoms in an active site. - The lock-and –key model (Emil Fischer): The enzyme has a fit shape before the substrate is bound. - The Induced-Fit Model (Daniel Koshland, Jr. 1958) Enzymes are flexible and the shapes of the act ...
AP Chemistry
AP Chemistry

... Assume that chlorine is the central atom of each of the following species above. (a) Draw the Lewis dot structure for each of the above species. (b) List the species in order of decreasing bond angle and justify your answer. (c) Identify the one species which would dimerize and justify your answer. ...
reactions taking place within cells
reactions taking place within cells

... (8) • Shown as standard value. Experiment not conducted under ‘standard’ conditions • Too many d.ps/significant figures. Accuracy of apparatus doesn’t warrant • Not shown as negative. Exothermic reaction ...
Review AGº = -RTlnKº Calculate the equilibrium constant Kc at 25 ºC
Review AGº = -RTlnKº Calculate the equilibrium constant Kc at 25 ºC

... Because changes in enthalpy, entropy, and free energy are state functions, we can use any pathway to calculate the change in enthalpy, entropy, and free energy of an overall reaction. Hess’s Law: ΔH for a process is equal to the sum of ΔH for any set of steps, i.e., for any path that equals the over ...
Supplementary Methods - Word file (146 KB )
Supplementary Methods - Word file (146 KB )

... A computer program was developed to select mRNA activation and deactivation tags, which were then realized using ssDNA molecules in most of our experiments. It accepts a set of mRNA sequences of the disease markers for a particular disease and provides the two most unique short subsequences for each ...
Chapter 4: Chemical Reaction Dynamics
Chapter 4: Chemical Reaction Dynamics

... usually represented in a polar plot. The contour lines indicate the product flux scattered into a certain angle θ with a given velocity u (or kinetic energy Et’). ...
METABOLISM IN HEALTH AND DISEASES I Lecture 2 Pentose
METABOLISM IN HEALTH AND DISEASES I Lecture 2 Pentose

... • G6PD converts glucose-6-phosphate into 6-phosphogluconoδ-lactone • This is the rate-limiting enzyme of this metabolic pathway that supplies reducing energy to cells by maintaining the level of the co-enzyme nicotinamide adenine dinucleotide phosphate(NADPH) • The NADPH in turn maintains the supply ...
ENZYMES - York Catholic District School Board
ENZYMES - York Catholic District School Board

... Specialists in special systems For example, within a human being, pH levels can vary within the digestive system  The stomach is a highly acidic area (pH = 1) whereas the duodenum is a more basic area thanks to the pancreas (pH = 5-6)  Therefore, enzymes that function in the stomach must be able ...
South Pasadena • AP Chemistry Name
South Pasadena • AP Chemistry Name

... The enthalpy of the reactants, Hreactants and the enthalpy of the products, Hproducts depend on the bonding of the reactants and products… nothing else. So, the Hreaction only depends on the initial and final state of the reaction, not how you got from one state to another state. It is called a “st ...
NOTE Mixed-Ligand Complexes of Cu2+, Ni2+, Co2+, Zn2+ with 2,2
NOTE Mixed-Ligand Complexes of Cu2+, Ni2+, Co2+, Zn2+ with 2,2

... of primary complex does not take place in the pH range 4-8. It can be considered that ABDA combines with species [M(Bipy)]2+ just as it does with [M(aq.)]2+ in simple system. As such the horizontal distance between the curve D and E can be used for the calculation of n MAL . The average number of AB ...
RESPIRATION Production of ATP and CO2 by O2 and organic
RESPIRATION Production of ATP and CO2 by O2 and organic

... Oxidation: removal of eReduction: addition of eC6H12O6 +6O2  6CO2 + 6H2O + E (ATP + Heat) This is typically how Respiration (and Photosynthesis) is represented Oxidation of sugar, Reduction of molecular oxygen But is a much simplified representation “The process is complex and challenging to learn. ...
Prediction of protein subcellular locations using Markov chain models
Prediction of protein subcellular locations using Markov chain models

2.3 Carbon-Based Molecules
2.3 Carbon-Based Molecules

... • Carbon is the building block of life because all living things are made up of Carbon ...
Balancing Redox Equations
Balancing Redox Equations

... Oxidation Number - The charge that an atom would have if the compound in which it were found were ionic. The rules: 1) The sum of the oxidation numbers of the atoms in a molecule must be equal to the overall charge on the molecule. 2) To assign a number to a transition metal ion (not listed in the t ...
Oxidation-Reduction Reactions
Oxidation-Reduction Reactions

... reduced." There is no net change in the number of electrons in a redox reaction. Those given off in the oxidation half reaction are taken on by another species in the reduction half reaction. The two species that exchange electrons in a redox reaction are given special names. The ion or molecule th ...
ENZYMES
ENZYMES

... © 2007 Paul Billiet ODWS (edited by ckelly 2014) ...
ENZYMES A CATALYST is a substance that speeds up a chemical
ENZYMES A CATALYST is a substance that speeds up a chemical

... A CATALYST is a substance that speeds up a chemical reaction by reducing the amount of ACTIVATION ENERGY needed to start that reaction. ENZYMES are the biological molecules (proteins or RNA) that act as catalysts in a living organism. The seemingly simple act of breaking down food molecules to relea ...
Types of Aqueous Reactions
Types of Aqueous Reactions

... http://www.youtube.com/watch?v=4N0m95PEx HY&feature=related ...
View Full PDF - Biochemical Society Transactions
View Full PDF - Biochemical Society Transactions

... enzyme. It is notable therefore that the non-linear-slope replots were seen with both products, but only when pyruvate was the variable substrate. This would appear to rule out formation of a complex involving more than one molecule of the inhibitor in a rapid-equilibrium random mechanism as an expl ...
computational chemistry
computational chemistry

... The reader is advised to start with this book and to then delve further into the computational literature pertaining to his or her speci®c work. It is impossible to reference all relevant works in a book such as this. The bibliography included at the end of each chapter primarily lists textbooks and ...
Competing Interactions in the Self-Assembly of NC-Ph3
Competing Interactions in the Self-Assembly of NC-Ph3

... is particularly evident in the map representing the LUMO+1, where it appears dark. Surprisingly, these orbitals have a lateral extension far larger than the width of the molecule. (One molecular backbone is sketched for comparison.) In addition, in most molecules, the LUMO shows a higher intensity o ...
4 Regulation Enzyme Activity GOB Structures
4 Regulation Enzyme Activity GOB Structures

... In feedback control, when the end product level is high, • the end product of a series of reactions acts as a negative regulator and binds to the allosteric site. • the substrate cannot bind to the active site, and production of all of the intermediate compounds in the subsequent reaction sequence s ...
PowerPoint 簡報
PowerPoint 簡報

... • Glycolysis is an almost universal central pathway of glucose catabolism, the pathway with the largest flux of carbon in most cells. • In some mammalian tissues (erythrocytes, renal medulla, brain, sperm), the glycolytic breakdown of glucose is the sole source of metabolic energy. ...
Chapter 8 Chemical Equations and Reactions
Chapter 8 Chemical Equations and Reactions

... iv) List four kinds of single-displacement reactions and three kinds of double-displacement reactions. v) Predict the products of simple reactions given the reactants. ...
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Multi-state modeling of biomolecules

Multi-state modeling of biomolecules refers to a series of techniques used to represent and compute the behaviour of biological molecules or complexes that can adopt a large number of possible functional states.Biological signaling systems often rely on complexes of biological macromolecules that can undergo several functionally significant modifications that are mutually compatible. Thus, they can exist in a very large number of functionally different states. Modeling such multi-state systems poses two problems: The problem of how to describe and specify a multi-state system (the ""specification problem"") and the problem of how to use a computer to simulate the progress of the system over time (the ""computation problem""). To address the specification problem, modelers have in recent years moved away from explicit specification of all possible states, and towards rule-based formalisms that allow for implicit model specification, including the κ-calculus, BioNetGen, the Allosteric Network Compiler and others. To tackle the computation problem, they have turned to particle-based methods that have in many cases proved more computationally efficient than population-based methods based on ordinary differential equations, partial differential equations, or the Gillespie stochastic simulation algorithm. Given current computing technology, particle-based methods are sometimes the only possible option. Particle-based simulators further fall into two categories: Non-spatial simulators such as StochSim, DYNSTOC, RuleMonkey, and NFSim and spatial simulators, including Meredys, SRSim and MCell. Modelers can thus choose from a variety of tools; the best choice depending on the particular problem. Development of faster and more powerful methods is ongoing, promising the ability to simulate ever more complex signaling processes in the future.
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