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The Inherited Metabolic Disorders News
The Inherited Metabolic Disorders News

... home with seizure medications. At 4 months, Shawn began presenting signs of spasms and he was admitted to the hospital again. He was unable to hold his head up, and was “floppy” in appearance. He was again admitted to the hospital in London, and the doctors began to investigate the cause of his spas ...
The Inherited Metabolic Disorders News
The Inherited Metabolic Disorders News

... PDCD is a rare disorder. Pyruvate dehydrogenase (PDH) is an essential and important enzyme in the mitochondrial metabolism. The effects of this deficiency are serious as there is a lack of energy production and build up of lactic acid. PDH catalyzes the oxidation of pyruvate to acetyl CoA (Fig 1). W ...
ppt - Chair of Computational Biology
ppt - Chair of Computational Biology

... metabolic flow, analyze the coregulation of enzymes at metabolic branch-points. Search KEGG for metabolic compounds that are involved in exactly 3 reactions. Only consider reactions that exist in S.cerevisae. 3-junctions can integrate metabolic flow (convergent junction) or allow the flow to diverge ...
BIOLOGY 311C - Brand Spring 2007 NAME (printed very legibly
BIOLOGY 311C - Brand Spring 2007 NAME (printed very legibly

Data Mining - functional statistical genetics/bioinformatics
Data Mining - functional statistical genetics/bioinformatics

... Copyright restrictions may apply. ...
Overview of Inherited Metabolic Disorders
Overview of Inherited Metabolic Disorders

...  Accept dietary nutrients and supply them to appropriate body tissues in sufficient but non-toxic amounts  maintain appropriate biosynthetic mechanisms to convert dietary nutrients into required metabolites  maintain metabolic homeostatic mechanisms to ensure that critical nutrients are available ...
2–4 Chemical Reactions and Enzymes
2–4 Chemical Reactions and Enzymes

... Describe how the enzyme and substrate interact to catalyze chemical reactions. Describe conditions that affect enzyme function. ...
Metabolism: An Overview
Metabolism: An Overview

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Proteomics of the chloroplast to chromoplast transition
Proteomics of the chloroplast to chromoplast transition

... “tomato chromoplast proteomics project” will bring complementary information to the running “tomato genomics and sequencing projects” by improving genome annotation through the insertion of post-translational modifications and sub-cellular localisation of the gene products. ...
Lecture_09_Metabolic_systems - Home | CISB-ECN
Lecture_09_Metabolic_systems - Home | CISB-ECN

... A primary metabolite is directly involved in processes of normal growth, development, and reproduction (e.g. glucose and pyruvate). A secondary metabolite is not directly involved in those processes, but usually has an important ecological function. Examples include antibiotics and pigments. ...
Data IG and GF
Data IG and GF

... • A set of guiding questions that might help you in your writing • You can chose between a set of topics broadly covering the taught material "Where a topic is assessed by a mini-project, the mini-project should be designed to take a typical student about three days. You are not permitted to withdra ...
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Enzymes and Metabolism Chemical Reactions Chemical Reactions

... – optimal enzyme function at specific pH – ↓ function at higher or lower pH’s ...
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METABOLIC PATHWAYS & ENZYMES

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Addition of the following reactions responsible for the synthesis of

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Powerpoint slides

... Genome analysis. Genome – the sum of genes and intergenic sequences of a haploid cell. ...
Cycle Krebs Worksheet - LTE - IB
Cycle Krebs Worksheet - LTE - IB

... 1.   We   are   going   to   study   a   metabolic   pathway   involved   in   catabolism.   For   that,   we   are   assembling   a   puzzle,  which  works  like  this:  there  will  be  available  some  clues  about  the  metabolic  p ...
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Chemical Equations Balancing Chemical Equations Try One…

Analysis and simulation of metabolic networks: Application to HEPG2
Analysis and simulation of metabolic networks: Application to HEPG2

... The first step in the toxicity mechanism involves the interaction between the chemical and one or more macromolecular targets which may consists on genetic material, enzymes/proteins, transport molecules, receptors, etc. Therefore, to progress in this direction, it is necessary to develop approaches ...
Introduction to bioinformatics
Introduction to bioinformatics

... Two other useful sites INFOBIOGEN-The Public Catalog of Databases http://www.infobiogen.fr/services/dbcat/ ...
MCADD
MCADD

... What is MCADD • Fatty acids are an important energy reserve (fuel) during periods of poor calorie intake, fasting or during infections • Patients with MCADD have a deficiency of an enzyme necessary for the breakdown of medium chain fatty acids • Medium chain fats accumulate and make toxic substance ...
This is Most of an Old Exam
This is Most of an Old Exam

... C. NAD+ and FAD+ are hydrogen carrier molecules. NAD+ can carry one hydrogen and electron, FAD+ can carry two. D. Hexokinase, the enzyme that catalyzes the first reaction in glycolysis, is highly regulated via allosteric mechanisms. _____ 2.Synthesis of glucose from non-carbohydrate precursors is ca ...
genome - Microme
genome - Microme

... Functional classifications from annotation tools  Gene Ontogoly (GO classification) <- InterProScan results  COG classification <- COGnitor results ...
Exporter la page en pdf
Exporter la page en pdf

... such as hill-climbing algorithms, to sample the super-exponential space of possible networks. By contrast, constraint-based methods, such as the PC and IC algorithms, are expected to run in polynomial time on sparse underlying graphs, provided that a correct list of conditional independencies is ava ...
AP Respiration Test Review
AP Respiration Test Review

... 21. What is the total amount of ATP produced in glycolysis, pyruvic acid conversion and the Kreb’s? 22. What step of aerobic respiration produces the most chemical energy (ATP)? 23. Where are the electron transport chains located? 24. What molecules directly donate electrons to the electron transpo ...
Exporter la page en pdf
Exporter la page en pdf

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Metabolic network modelling



Metabolic network reconstruction and simulation allows for an in-depth insight into the molecular mechanisms of a particular organism. In particular, these models correlate the genome with molecular physiology. A reconstruction breaks down metabolic pathways (such as glycolysis and the Citric acid cycle) into their respective reactions and enzymes, and analyzes them within the perspective of the entire network. In simplified terms, a reconstruction collects all of the relevant metabolic information of an organism and compiles it in a mathematical model. Validation and analysis of reconstructions can allow identification of key features of metabolism such as growth yield, resource distribution, network robustness, and gene essentiality. This knowledge can then be applied to create novel biotechnology.In general, the process to build a reconstruction is as follows: Draft a reconstruction Refine the model Convert model into a mathematical/computational representation Evaluate and debug model through experimentation↑
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