2012_ISCBAsia_IRRI
... integration of the genebank information with phenotypic, breeding, genomic, and IPR data for enhanced utilization • Development of toolkits/workbenches to enable gene/genotype->phenotype predictions by research scientists and rice breeders • Make these databases, tools, & analyses results available ...
... integration of the genebank information with phenotypic, breeding, genomic, and IPR data for enhanced utilization • Development of toolkits/workbenches to enable gene/genotype->phenotype predictions by research scientists and rice breeders • Make these databases, tools, & analyses results available ...
TRPGR: Sequencing the barley gene-space
... The proposed project will integrate with and complement the existing barley ESTs to enable researchers to have access to the entire barley gene set. The relationship between GE sequences and gene expression will be possible via in silico alignment with the existing Barley1 gene sequences. Furthermor ...
... The proposed project will integrate with and complement the existing barley ESTs to enable researchers to have access to the entire barley gene set. The relationship between GE sequences and gene expression will be possible via in silico alignment with the existing Barley1 gene sequences. Furthermor ...
What is a genome?
... These are reads that are generated when both ends of a fragment are sequenced ...
... These are reads that are generated when both ends of a fragment are sequenced ...
Individual eukaryotic genomes
... Genome size: 278 Mb (twice the size of Drosophila) Chromosomes: 3 Genes: about 14,000 Website: http://www.ensembl.org/Anopheles_gambiae/ --Diverged from Drosophila 250 MYA (average amino acid sequence identity of orthologs is 56%). Compare human and pufferfish (diverged 400 MYA, 61% identity): insec ...
... Genome size: 278 Mb (twice the size of Drosophila) Chromosomes: 3 Genes: about 14,000 Website: http://www.ensembl.org/Anopheles_gambiae/ --Diverged from Drosophila 250 MYA (average amino acid sequence identity of orthologs is 56%). Compare human and pufferfish (diverged 400 MYA, 61% identity): insec ...
Presentazione di PowerPoint
... RNA-Seq Sequencing the transcriptome to investigate differentially expressed genes: - under different conditions, or - in different tissues - in different alleles ...
... RNA-Seq Sequencing the transcriptome to investigate differentially expressed genes: - under different conditions, or - in different tissues - in different alleles ...
presentation UCSC part 1 - Biomedical Genomics Group
... We will walk through them together 2 styles: questions only, and step-by-step When we are finished the formal exercises, we can help you to investigate issues that you want to understand for your research ...
... We will walk through them together 2 styles: questions only, and step-by-step When we are finished the formal exercises, we can help you to investigate issues that you want to understand for your research ...
Asilomar - University of Notre Dame
... approach, complemented with de novo- and structure-based approaches, to discover and annotate TEs in invertebrate genomes. Once fully automated, our pipeline will be integrated with VectorBase, an NIAID Bioinformatics Resource Center for invertebrate vectors of human pathogens, to produce a first-pa ...
... approach, complemented with de novo- and structure-based approaches, to discover and annotate TEs in invertebrate genomes. Once fully automated, our pipeline will be integrated with VectorBase, an NIAID Bioinformatics Resource Center for invertebrate vectors of human pathogens, to produce a first-pa ...
Begins of the human genome project
... determined by the Patent and Trademark Office ( USPTO ) in the Department of Commerce. A patent application is judged on four criteria. Useful: The inventor must identify some useful purpose for it. Novel: The invention is not known before the filing. Nonobvious: The invention is not an improvement ...
... determined by the Patent and Trademark Office ( USPTO ) in the Department of Commerce. A patent application is judged on four criteria. Useful: The inventor must identify some useful purpose for it. Novel: The invention is not known before the filing. Nonobvious: The invention is not an improvement ...
compEpiTools - Bioconductor
... GRanges objects, GRanges metadata, putative methylation sites and their associated absolute and relative methylation level. All these data types are highly relevant for epigenomics integrative analyses and can include but they are not limited to: base-resolution or low-resolution DNA methylation dat ...
... GRanges objects, GRanges metadata, putative methylation sites and their associated absolute and relative methylation level. All these data types are highly relevant for epigenomics integrative analyses and can include but they are not limited to: base-resolution or low-resolution DNA methylation dat ...
HW7 key - WordPress.com
... Notice that this is also log2 4. The entropy of a uniform discrete random variable over an alphabet of size n is log2 n (b) Suppose that x1 , x2 , . . . , xT are T total random variables that are independent and identically distributed. Each random variable considered on its own has entropy H. Prove ...
... Notice that this is also log2 4. The entropy of a uniform discrete random variable over an alphabet of size n is log2 n (b) Suppose that x1 , x2 , . . . , xT are T total random variables that are independent and identically distributed. Each random variable considered on its own has entropy H. Prove ...
gabi - beet: the german sugar beet genome - assbt
... than 400,000 bases have been sequenced and analysed already and more than 1,500 SNPs detected; approx. 1 SNP every 70 base pairs SNP mapping is another milestone hard to achieve The specific advantages of using SNPs as the markers of the future are the potential of highly automated and high-throughp ...
... than 400,000 bases have been sequenced and analysed already and more than 1,500 SNPs detected; approx. 1 SNP every 70 base pairs SNP mapping is another milestone hard to achieve The specific advantages of using SNPs as the markers of the future are the potential of highly automated and high-throughp ...
Masters_Thesis_Final - JScholarship
... 2.1 Introduction Several mutations in non-coding portions of the genome are responsible for many known complex traits and are capable of causing diseases [5]. These mutations lie in regulatory regions and affect gene expression levels. Hence, it is important to identify parts of genomes which act as ...
... 2.1 Introduction Several mutations in non-coding portions of the genome are responsible for many known complex traits and are capable of causing diseases [5]. These mutations lie in regulatory regions and affect gene expression levels. Hence, it is important to identify parts of genomes which act as ...
Genome browsers and other resources
... Genome browsers and other resources Some from this years issue: 6. Genomic variation, diseases and drugs – highlights from 29 papers OMIM.org: Online Mendelian Ineritance in Man (OMIM*), an online catalog of human genes and genetic disorders GRASP v2.0: an update on the Genome-Wide Repository o ...
... Genome browsers and other resources Some from this years issue: 6. Genomic variation, diseases and drugs – highlights from 29 papers OMIM.org: Online Mendelian Ineritance in Man (OMIM*), an online catalog of human genes and genetic disorders GRASP v2.0: an update on the Genome-Wide Repository o ...
Genome browser - Indiana University
... • All discovered SNPs (and any others in dbSNP) typed in all 270 HapMap samples • Current data set – 1 SNP every 279 bp A much more complete variation resource by which the genome-wide map can evaluated ...
... • All discovered SNPs (and any others in dbSNP) typed in all 270 HapMap samples • Current data set – 1 SNP every 279 bp A much more complete variation resource by which the genome-wide map can evaluated ...
snpGalaxyEx.new
... Finding SNPs that fall in suspected functional regions a. Filter our input dataset (from part 1) to keep rows only whose intervals intersect (i.e. overlap) those in the library dataset of predicted regulatory regions. b. Filter our input dataset (from part 1) to keep only rows whose intervals inters ...
... Finding SNPs that fall in suspected functional regions a. Filter our input dataset (from part 1) to keep rows only whose intervals intersect (i.e. overlap) those in the library dataset of predicted regulatory regions. b. Filter our input dataset (from part 1) to keep only rows whose intervals inters ...
Prediction of Effective genome size in metagenomics samples
... Classical approaches for estimating genome size – two examples for possible errors ...
... Classical approaches for estimating genome size – two examples for possible errors ...
GenomicsResourcesForEmergingModelOrganismsPoster
... diverse contexts, from genome annotation projects within individual labs to major model organism databases. ...
... diverse contexts, from genome annotation projects within individual labs to major model organism databases. ...
Mouse Repeats
... up to 5 nucleotides) the mouse genome contains two to three times more of these sequences. Of the longer variety (over 20 nucleotides) the difference between mouse and human is even greater. This suggests that the reason for more SSRs in mouse is due to both initiation and extension (Waterston, Lind ...
... up to 5 nucleotides) the mouse genome contains two to three times more of these sequences. Of the longer variety (over 20 nucleotides) the difference between mouse and human is even greater. This suggests that the reason for more SSRs in mouse is due to both initiation and extension (Waterston, Lind ...
2012-04-16_Geuvadis_Analysis_CRG_Marc
... 4: miRNA de novo discovery when miRNA precursors are processed by the Dicer protein, three products are released (a) ...
... 4: miRNA de novo discovery when miRNA precursors are processed by the Dicer protein, three products are released (a) ...
