ppt - Chair of Computational Biology
... blocks and segments, respectively. The mouse genome. Nature 420, 520 - 562 6. Lecture WS 2003/04 ...
... blocks and segments, respectively. The mouse genome. Nature 420, 520 - 562 6. Lecture WS 2003/04 ...
Overview of splicing relevant databases - Stamm
... corresponding publication (see table 1). An example of the utilization of FAST DB from GenoSplice technology will be provided in the next section. The following part of this section describes how to create a custom track with the UCSC Genome Browser (explanations taken from the UCSC website). Genome ...
... corresponding publication (see table 1). An example of the utilization of FAST DB from GenoSplice technology will be provided in the next section. The following part of this section describes how to create a custom track with the UCSC Genome Browser (explanations taken from the UCSC website). Genome ...
PDF - WashU Epigenome Browser
... SNP and LD annotation tracks are available for human genomes. By default, the LD scoring system is D’. The correlation coefficient (R square) or LOD can be displayed using the configuration menu. These tracks can be found in the “Population variation” group of the annotation track panel. To search f ...
... SNP and LD annotation tracks are available for human genomes. By default, the LD scoring system is D’. The correlation coefficient (R square) or LOD can be displayed using the configuration menu. These tracks can be found in the “Population variation” group of the annotation track panel. To search f ...
summary_Stickleback_Seg_Dup
... Parameters and Notes for WGAC pipeline • Repeats – Standard repeat coordinated were reverse generated from the soft ...
... Parameters and Notes for WGAC pipeline • Repeats – Standard repeat coordinated were reverse generated from the soft ...
computation for chIP-seq and rNA-seq studies
... these criteria are met, successful ChIP-seq datasets typically consist of 2–20 million mapped reads. In addition to the degree of success of the immunoprecipitation, the number of occupied sites in the genome, the size of the enriched regions and the range of ChIP signal intensities all affect the r ...
... these criteria are met, successful ChIP-seq datasets typically consist of 2–20 million mapped reads. In addition to the degree of success of the immunoprecipitation, the number of occupied sites in the genome, the size of the enriched regions and the range of ChIP signal intensities all affect the r ...
Navigating the HapMap - Oxford Academic
... The HapMap project has been run in three phases. HapMap phase I was completed in October 2005 and involved genotyping of 1 M SNPs at an average spacing of 5 kb. Phase I of the HapMap also involved additional SNP finding in 48 samples from the original four populations across 10 specific 500 kb ENCO ...
... The HapMap project has been run in three phases. HapMap phase I was completed in October 2005 and involved genotyping of 1 M SNPs at an average spacing of 5 kb. Phase I of the HapMap also involved additional SNP finding in 48 samples from the original four populations across 10 specific 500 kb ENCO ...
"Dual-coding Regions in Alternatively Spliced Human Genes". In
... way to identify dual-coding regions is to analyse phase usage based on annotated transcript data. In this approach, all available transcript isoforms from the same genetic locus are first aligned against the genomic sequence. Then nucleotide positions in the coding region are annotated as first, secon ...
... way to identify dual-coding regions is to analyse phase usage based on annotated transcript data. In this approach, all available transcript isoforms from the same genetic locus are first aligned against the genomic sequence. Then nucleotide positions in the coding region are annotated as first, secon ...
The bonobo genome compared with the chimpanzee and human
... than with each other. Here we report the sequencing and assembly of the bonobo genome to study its evolutionary relationship with the chimpanzee and human genomes. We find that more than three per cent of the human genome is more closely related to either the bonobo or the chimpanzee genome than the ...
... than with each other. Here we report the sequencing and assembly of the bonobo genome to study its evolutionary relationship with the chimpanzee and human genomes. We find that more than three per cent of the human genome is more closely related to either the bonobo or the chimpanzee genome than the ...
Computational Biology
... Drawbacks of breakpoint analysis: costly + ambiguous Let us consider a simple example: Suppose that the genomes G1, G2, and G3, evolved from the ancestral genome A = 1 2 3 4 5 6 by one reversal each such that G1 = 1 2 -4 -3 5 6 G2 = 1 -4 -3 -2 5 6 G3 = 1 2 3 4 -5 6 Searching for the breakpoint medi ...
... Drawbacks of breakpoint analysis: costly + ambiguous Let us consider a simple example: Suppose that the genomes G1, G2, and G3, evolved from the ancestral genome A = 1 2 3 4 5 6 by one reversal each such that G1 = 1 2 -4 -3 5 6 G2 = 1 -4 -3 -2 5 6 G3 = 1 2 3 4 -5 6 Searching for the breakpoint medi ...
Concept_Paper
... organism at the forefront of fundamental research. This is particularly the case in areas that are less accessible to in vivo experimental investigation in other model organisms, such as regulated secretion, cell motility, phagocytosis, telomere function, function of post-translational modifications ...
... organism at the forefront of fundamental research. This is particularly the case in areas that are less accessible to in vivo experimental investigation in other model organisms, such as regulated secretion, cell motility, phagocytosis, telomere function, function of post-translational modifications ...
2000 Genome Biology paper
... important in the evolution of species. Previously, these large-scale genome-changing events were studied through genetic or cytological studies. With the availability of many complete genome sequences it is now possible to study such events through comparative genomics. The publication of the yeast ...
... important in the evolution of species. Previously, these large-scale genome-changing events were studied through genetic or cytological studies. With the availability of many complete genome sequences it is now possible to study such events through comparative genomics. The publication of the yeast ...
Touring Ensembl: A practical guide to genome browsing Open Access
... genome browser to go beyond simple questions like 'where are histone modification sites found in the genome' to a more integrated query such as 'where do regulatory features and conserved regions match up in the 5'UTR of a gene.' This allows a more hypothesisbuilding approach to determining new and ...
... genome browser to go beyond simple questions like 'where are histone modification sites found in the genome' to a more integrated query such as 'where do regulatory features and conserved regions match up in the 5'UTR of a gene.' This allows a more hypothesisbuilding approach to determining new and ...
Next-Generation Sequencing applied to aDNA
... resulting files will start with “Przewalski”. The second line defines the sample name; this is used to tag the resulting alignments data, and is typically the same as the project name. The third line names a single library, which we have chosen to call “Library1”, while the fourth line names a singl ...
... resulting files will start with “Przewalski”. The second line defines the sample name; this is used to tag the resulting alignments data, and is typically the same as the project name. The third line names a single library, which we have chosen to call “Library1”, while the fourth line names a singl ...
Attachment PDF Icon
... • The maximal genomic span of a PET genomic alignment must be less than one million bp ...
... • The maximal genomic span of a PET genomic alignment must be less than one million bp ...
RESEARCH ARTICLES
... differ. We began to design the synthetic genome before both sequences were finished. Consequently, most of the cassettes were designed and synthesized based on the CP001621 sequence (11). When it was finished, we chose the sequence of the genome successfully transplanted from yeast (CP001668) as our ...
... differ. We began to design the synthetic genome before both sequences were finished. Consequently, most of the cassettes were designed and synthesized based on the CP001621 sequence (11). When it was finished, we chose the sequence of the genome successfully transplanted from yeast (CP001668) as our ...
Whole genome analyses using PopGenome and VCF files
... 4 Set the populations The population can be set via the set.population function. This function expects an object of class GENOME and the populations defined as a list. Each element of the list contains the individual names as a vector. In addition, the parameter diploid have to be switched to TRUE i ...
... 4 Set the populations The population can be set via the set.population function. This function expects an object of class GENOME and the populations defined as a list. Each element of the list contains the individual names as a vector. In addition, the parameter diploid have to be switched to TRUE i ...