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No Slide Title
No Slide Title

... Alert Cell, Science, and Nature! ...
Genomics in NBS: potential targets and benefits
Genomics in NBS: potential targets and benefits

... of medicine that involves using genomic data to better predict, diagnose, and treat disease • New technologies have driven advances in genomic medicine in last 10 years and will in the future • Genomic sequencing now cheaper and faster - $1000 genome ...
locomotion in a consanguineous kindred the gene
locomotion in a consanguineous kindred the gene

... 123-fold, with 2.98 billion bases and 40.3 million reads obtained and 28% of reads mapped to the targeted region; 99.6% of targeted bases were covered by at least four reads. Combined sequence data for the three affected siblings yielded at least a fourfold coverage of 99.78% of all coding base pair ...
ucsc genome research primer - Center for Biomolecular Science
ucsc genome research primer - Center for Biomolecular Science

... As we begin to better understand the molecular mechanisms responsible for human disease, entire new avenues of treatments will be possible. We are only now getting a first glimmer of the molecular functions of a healthy human cell or organ, and we are still a long way from understanding the often su ...
2005 Final Report ( format)
2005 Final Report ( format)

... is a large and sharp downward spike in the 2mb region (although it does not line up perfectly with the corresponding spikes in the CAI and Sigma plots). The second is an upward plateau in the 1.4mb region, seemingly the only significant increase from the mean GC in the plot. The results of the stati ...
- Cal State LA - Instructional Web Server
- Cal State LA - Instructional Web Server

... neuron and that the axonal projections map to different glomeruli on the olfactory bulb. • In 2003 a region of homology called the H region was identified as a putative cis regulatory element of the a particular set of olfactory receptors – MOR28 and their orthologous counterparts in humans. ...
The GMOD Project: Creating Reusable Software Components
The GMOD Project: Creating Reusable Software Components

...  BioPerl  go-perl (Gene Ontology consortium’s perl tools)  Optional:  XORT, a perl tool for loading and dumping XML files to/from a database  ModWare, a BioPerl-compatible API built on Class::DBI ...
Full-text PDF
Full-text PDF

Discovering conserved DNA
Discovering conserved DNA

... Repressor, or Both? • Most labs have differential expression profiling of transcription factor together with TF ChIP-seq • Do genes with higher regulatory potential show more up- or down-expression than all the genes in the genome? ...
The California Institute for Telecommunications - Larry Smarr
The California Institute for Telecommunications - Larry Smarr

... Analysis (CAMERA). Scientists will use CAMERA for metagenomics research -analyzing microbial genomic sequence data in the context of other microbial species, as well as in comparison to a variety of other "metadata" such as the chemical and physical conditions in which microbes are sampled. The CAME ...
Lec-GenomeAllignment2010
Lec-GenomeAllignment2010

... We do not quantify True Negative (TN) alignments as the number of TN possibilities is extremely large, growing with the product of sequence lengths. ...
- The Boyle Lab
- The Boyle Lab

Sujet d`ordre général
Sujet d`ordre général

... Nature (both human and non-human) is an intimate nexus of fact and ...
ppt_I
ppt_I

... (eg Alpha satellite, Alu repeats) All known genes, correctly identified (99.74%) heterochromatin ~4% grey ...
For more information please see the final program
For more information please see the final program

... Examples of ongoing projects are those involving the Africa Savannah Elephant, the rabbit, the three-spine stickleback (Gasterosteus aculeatus), and the cichlid fishes of the African lakes. Federica received her Ph.D. in Immunogenetics from the University of Reading, United Kingdom in 1998. She was ...
Non-directed Modification of Genome Cont.. - PMAS
Non-directed Modification of Genome Cont.. - PMAS

...  Genome modification using zinc finger nucleases is a time-consuming process  Most such proteins are not working  A protein that binds its target efficiently in certain conditions will not bind with the same efficiency under other conditions ...
Segway: simultaneous segmentation of multiple functional genomics
Segway: simultaneous segmentation of multiple functional genomics

PAN PROSTATE GENOMICS CONSORTIUM October 2016
PAN PROSTATE GENOMICS CONSORTIUM October 2016

... working in prostate cancer genomics. Key papers have already been published from the participating groups including papers in Nature, Lancet Oncology, Science, Elife and Nature Genetics. Many other publications have been submitted or are in preparation. Several members of this group are already part ...
To Release or Not to Release: Evaluating Information Leaks
To Release or Not to Release: Evaluating Information Leaks

... • In the mid-1970s, Frederick Sanger developed techniques to sequence DNA.[1] • In June 2000, the majority of the human genome had in fact been sequenced.[1] • 2010, the cost of genotyping one person is also small. Estimated less than ...
I = -[1/3*log 2 (1/3)+ 1/3*log 2 (1/3)+ 1/3*log 2 (1/3)] + 4.32 = 2.73
I = -[1/3*log 2 (1/3)+ 1/3*log 2 (1/3)+ 1/3*log 2 (1/3)] + 4.32 = 2.73

GenomeBrowser - CBS
GenomeBrowser - CBS

... • Less easy to use • Maintained/updated by several people ...
Mapping the Human Genome - Scheid Signalling Lab @ York
Mapping the Human Genome - Scheid Signalling Lab @ York

... – Average gene extends over 27 kb – Average 8.8 introns – Average 145 bp ...
Genome assemblies
Genome assemblies

... The IWGSC RefSeq v1.0 is an integration of the IWGSC WGA v0.4 with the IWGSC chromosomebased strategy and additional resources including, but not limited to, physical maps of all chromosomes, sequenced BACs, BioNano optical maps, alignment to RH maps (radiation hybridbased maps) and GBS (genotyping ...
Genome Biology and
Genome Biology and

... • Limited to known genes – misses unknown genes ...
158-15(10-7-00) Human, Mouse, Rat . . . What`s Next?: Scientists
158-15(10-7-00) Human, Mouse, Rat . . . What`s Next?: Scientists

... Indeed, resistance by chimps to certain cancers is perhaps the most provocative medical story of all, albeit one built on sparse evidence. The great apes regularly develop leukemias and lymphomas, which are cancers of the blood. In contrast, there’s evidence from hundreds of autopsies that the apes ...
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ENCODE

The Encyclopedia of DNA Elements (ENCODE) is a public research project launched by the US National Human Genome Research Institute (NHGRI) in September 2003.Intended as a follow-up to the Human Genome Project (Genomic Research), the ENCODE project aims to identify all functional elements in the human genome.The project involves a worldwide consortium of research groups, and data generated from this project can be accessed through public databases.
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