Lab 11: Simple genomic data analysis using R 1. UCSC genome
... genome, “Mar. 2006 (NCBI36/hg18)” assembly, “Genes and Gene Prediction” under group, “RefSeq Genes” under track, “refGene” under table. Then select “genome” under region, which means: you want to get data for the whole genome. Note that you can specify chromosome and location to get part of the data ...
... genome, “Mar. 2006 (NCBI36/hg18)” assembly, “Genes and Gene Prediction” under group, “RefSeq Genes” under track, “refGene” under table. Then select “genome” under region, which means: you want to get data for the whole genome. Note that you can specify chromosome and location to get part of the data ...
An update on ongoing projects within Biorange SP3.2.2.1
... • The ‘Gene neighborhood view’ shows all genes from all species in a certain phylogenetic lineage, and all genes in their proximity on the genome (10 genes to both sides) • Neighbouring genes are color-coded according to the orthologous groups they belong to • Gene neighborhood gives information abo ...
... • The ‘Gene neighborhood view’ shows all genes from all species in a certain phylogenetic lineage, and all genes in their proximity on the genome (10 genes to both sides) • Neighbouring genes are color-coded according to the orthologous groups they belong to • Gene neighborhood gives information abo ...
Recent WGD
... genes may be maintained by selection acting against double null alleles (Force et al. 1999) • Essential genes (e.g. ribosomal proteins) are more retained than the average • … but most of them are present in more than 2 copies ! • … their high rate of retention may be due to other factors (see later) ...
... genes may be maintained by selection acting against double null alleles (Force et al. 1999) • Essential genes (e.g. ribosomal proteins) are more retained than the average • … but most of them are present in more than 2 copies ! • … their high rate of retention may be due to other factors (see later) ...
Mammal evolution and biogeography
... evolving genes to resolve deep-level divergences within and among mammalian groups. To illustrate the explanatory powers of (molecular) phylogenetics for biology. ...
... evolving genes to resolve deep-level divergences within and among mammalian groups. To illustrate the explanatory powers of (molecular) phylogenetics for biology. ...
Chapter 10
... Monohybrid- cross involving one trait Dihybrid – cross involving two traits Crossing Over- Exchange of genetic material between homologous chromosomes Crossing over results in greater genetic recombination ...
... Monohybrid- cross involving one trait Dihybrid – cross involving two traits Crossing Over- Exchange of genetic material between homologous chromosomes Crossing over results in greater genetic recombination ...
Genetic Modification Regulations and Procedures
... Where are genes located? Since T. H. Morgan it is known to be on chromosomes, at least in Drosophila (light microscopy) Assigning genes to individual chromosomes - chromosomal aneuploidy - sex-linked traits (white-eyed in Drosophila) - somatic cell hybrids – selective human chromosome retention ...
... Where are genes located? Since T. H. Morgan it is known to be on chromosomes, at least in Drosophila (light microscopy) Assigning genes to individual chromosomes - chromosomal aneuploidy - sex-linked traits (white-eyed in Drosophila) - somatic cell hybrids – selective human chromosome retention ...
Sex Linked Genes cp
... 16. A husband and wife take their two kids to the doctors for a regular checkup. While there, the doctor discovers something unusual. The girl is colorblind, but the brother has normal vision. What does the doctor conclude that the kids genotype would be? ...
... 16. A husband and wife take their two kids to the doctors for a regular checkup. While there, the doctor discovers something unusual. The girl is colorblind, but the brother has normal vision. What does the doctor conclude that the kids genotype would be? ...
5.1.1 Gene Regulation, lac operon, Homeobox
... the chromatin (DNA and protein) in their nucleus degrades; mitochondria break down with the release of cytochrome c whole cell breaks down into small, membrane-wrapped, vesicles release ATP binds to receptors on phagocytic cells like macrophages and attract them to the dying cells (a "find-me" signa ...
... the chromatin (DNA and protein) in their nucleus degrades; mitochondria break down with the release of cytochrome c whole cell breaks down into small, membrane-wrapped, vesicles release ATP binds to receptors on phagocytic cells like macrophages and attract them to the dying cells (a "find-me" signa ...
幻灯片 1 - Springer Static Content Server
... Supplemental Figure 1: Treemaps of GO enrichment results at DAG25. (a): Treemap of biological processes at DAG25 using GO enrichment results. At least 2-fold change genes at DAG25 used for GO enrichment analysis at http://omicslab.genetics.ac.cn/GOEAST/index.php, and the GO enrichment results toget ...
... Supplemental Figure 1: Treemaps of GO enrichment results at DAG25. (a): Treemap of biological processes at DAG25 using GO enrichment results. At least 2-fold change genes at DAG25 used for GO enrichment analysis at http://omicslab.genetics.ac.cn/GOEAST/index.php, and the GO enrichment results toget ...
Slide 1
... However, most behavioral traits are polygenic: They are influenced by a large number of genes. Furthermore: Pleiotropy,1 gene influencing several different behavioral phenotypes is also common in the control of behavior. This makes it more difficult to have systematic experimental control. ...
... However, most behavioral traits are polygenic: They are influenced by a large number of genes. Furthermore: Pleiotropy,1 gene influencing several different behavioral phenotypes is also common in the control of behavior. This makes it more difficult to have systematic experimental control. ...
Inheritance - Glen Rose FFA
... to the two same alleles. • For example, AA or aa • A person may contain 2 genes for -brown eyes – one from each parent (AA) or 2 for ...
... to the two same alleles. • For example, AA or aa • A person may contain 2 genes for -brown eyes – one from each parent (AA) or 2 for ...
Arrowsmith extensions to bioinformatics
... Linking to microarray experimental data A = set of microarray experiments that measured reelin C = set of microarray experiments that measured tooth ...
... Linking to microarray experimental data A = set of microarray experiments that measured reelin C = set of microarray experiments that measured tooth ...
Supplementary information
... To determine the significance of these descriptors within a specified map region p-values from Fisher's exact two-tailed test were determined for Z-scores of selected genes. Thus, for each GO term at each level of the GO description, the number of genes, selected from the genes identified via the Z- ...
... To determine the significance of these descriptors within a specified map region p-values from Fisher's exact two-tailed test were determined for Z-scores of selected genes. Thus, for each GO term at each level of the GO description, the number of genes, selected from the genes identified via the Z- ...
Automated Gene Synthesis Machines
... The Risks of Gene Therapy • It can cause your immune system to attack the virus inserted causing organ failure and inflammation. • The virus may spread through more than one cell causing mutated cells and missing genes. • Finally it may introduce a tumor if they are inserted into the wrong spot in ...
... The Risks of Gene Therapy • It can cause your immune system to attack the virus inserted causing organ failure and inflammation. • The virus may spread through more than one cell causing mutated cells and missing genes. • Finally it may introduce a tumor if they are inserted into the wrong spot in ...
Gene - Oregon State University
... • Genotyping/sequencing tens of thousands of genes to speed conventional breeding or genetic analysis • Profiling gene expression in response to environment or in specialized tissues to identify new genes with important physiological roles – Can see coordinated changes of gene expression in ...
... • Genotyping/sequencing tens of thousands of genes to speed conventional breeding or genetic analysis • Profiling gene expression in response to environment or in specialized tissues to identify new genes with important physiological roles – Can see coordinated changes of gene expression in ...
EpigEnEtiCS: A pRiMER
... goes back to Lamarck in the early 19th century, but still only correlative evidence exists in humans. In contrast, many cellular epigenetic phenomena are now well understood on the molecular level. In humans, they include the parent-of-origin specific expression of genes (imprinting) and the shuttin ...
... goes back to Lamarck in the early 19th century, but still only correlative evidence exists in humans. In contrast, many cellular epigenetic phenomena are now well understood on the molecular level. In humans, they include the parent-of-origin specific expression of genes (imprinting) and the shuttin ...
Glioblastoma Multiforme (GBM) – Subtype Analysis
... – Median Center Arrays – Correct for differences between arrays – Standardize to unit variance? ...
... – Median Center Arrays – Correct for differences between arrays – Standardize to unit variance? ...
Fungal Genetics Newsletter 54 In Press Norman H. Giles (1915-2006)
... Vos in 1969. He began his academic career in Botany at Yale University in 1941 and was appointed Eugene Higgins Professor of Genetics in 1961. He interrupted his time at Yale to work as principal biologist for three years at Oak Ridge National Laboratory from 1947-1950. He was elected to the Nationa ...
... Vos in 1969. He began his academic career in Botany at Yale University in 1941 and was appointed Eugene Higgins Professor of Genetics in 1961. He interrupted his time at Yale to work as principal biologist for three years at Oak Ridge National Laboratory from 1947-1950. He was elected to the Nationa ...
Mutations Justified True or False - Grade 8 Learning from the Fossil
... advantage. Just like the giraffe, and how the mutation allowed him to eat the leaves up high, and not fight with the other short, necked giraffes. This is because If a whale, a long time ago, didn’t have flippers, and then he suddenly did. It would depend if he lived near a huge body of water for it ...
... advantage. Just like the giraffe, and how the mutation allowed him to eat the leaves up high, and not fight with the other short, necked giraffes. This is because If a whale, a long time ago, didn’t have flippers, and then he suddenly did. It would depend if he lived near a huge body of water for it ...
Determination of the Neuroprotective Index for Neuroprotective
... Search for Enrichment of Specific Functions using Cluspack and RetScope/GOAnno annotation protocol ...
... Search for Enrichment of Specific Functions using Cluspack and RetScope/GOAnno annotation protocol ...
Resources15 Reading resources
... different. Is this nature or nurture? Who knows? For every study of separated twins that points to strikingly similar life choices, there are pairs of twins who have been brought up together who have made radically different decisions. In my own case, I think my sister and I deliberately cultivated ...
... different. Is this nature or nurture? Who knows? For every study of separated twins that points to strikingly similar life choices, there are pairs of twins who have been brought up together who have made radically different decisions. In my own case, I think my sister and I deliberately cultivated ...
Lecture 14 Dev Bio JS
... axis of the embryo lead to transcription of different target genes? The Bcd gradient provides positional information along the axis in a dosedependent manner and efforts have been made to understand how this could be achieved. As the Bcd protein encodes a DNA-binding transcription factor, it was i ...
... axis of the embryo lead to transcription of different target genes? The Bcd gradient provides positional information along the axis in a dosedependent manner and efforts have been made to understand how this could be achieved. As the Bcd protein encodes a DNA-binding transcription factor, it was i ...