Two Genes with Similarity to Bacterial Response Regulators Are
... amino acid sequence contains a 10-kD C-terminal extension that has a Ser/Pro–rich stretch (32 Ser/Pro of 52 total residues) followed by a short acidic domain (Figure 1B). This domain of IBC7 does not share high primary sequence homology to any other sequences in GenBank and is not present in IBC6. I ...
... amino acid sequence contains a 10-kD C-terminal extension that has a Ser/Pro–rich stretch (32 Ser/Pro of 52 total residues) followed by a short acidic domain (Figure 1B). This domain of IBC7 does not share high primary sequence homology to any other sequences in GenBank and is not present in IBC6. I ...
Comparative analysis of the Geobacillus hemicellulose utilization locus reveals a highly
... identification of orthologous clusters in the sequenced Geobacillus genomes, by localized BlastN analysis. Between three and twelve partial or complete orthologous clusters were found in twenty of the sequenced strains, while no orthologous clusters could be found in the genomes of the remaining fou ...
... identification of orthologous clusters in the sequenced Geobacillus genomes, by localized BlastN analysis. Between three and twelve partial or complete orthologous clusters were found in twenty of the sequenced strains, while no orthologous clusters could be found in the genomes of the remaining fou ...
Comparative transcriptomics reveals key gene expression
... genes encoding a range of functions, including cell wall and secreted proteins, transcriptional regulators, PE/PPE proteins, lipid metabolism and toxin–antitoxin pairs. Furthermore, we probed the gene expression response of M. tuberculosis and M. bovis to an acid-shock perturbation which triggered a ...
... genes encoding a range of functions, including cell wall and secreted proteins, transcriptional regulators, PE/PPE proteins, lipid metabolism and toxin–antitoxin pairs. Furthermore, we probed the gene expression response of M. tuberculosis and M. bovis to an acid-shock perturbation which triggered a ...
jxb.oxfordjournals.org - Oxford Academic
... Our previous study revealed that nuclear proteins extracted from immature rice endosperm can specifically bind to the 53 bp (C53) DNA fragment located in the 5ʹ upstream region of SBE1, and the Ha-2 fragment of Wx can compete with this binding activity, suggested that the biosynthesis of amylose and ...
... Our previous study revealed that nuclear proteins extracted from immature rice endosperm can specifically bind to the 53 bp (C53) DNA fragment located in the 5ʹ upstream region of SBE1, and the Ha-2 fragment of Wx can compete with this binding activity, suggested that the biosynthesis of amylose and ...
Centromere Locations and Associated Chromosome
... used, so that the details of event regions close to this centromere may not be resolved. It was concluded that the translocation event probably occurred near the centromere region because the transposition breakpoint in the chromosome corresponding to AL7 in our terminology is close to the pericentr ...
... used, so that the details of event regions close to this centromere may not be resolved. It was concluded that the translocation event probably occurred near the centromere region because the transposition breakpoint in the chromosome corresponding to AL7 in our terminology is close to the pericentr ...
Spatially restricted domains of homeo-gene
... and the lung (Fig. 4D) . Hox-L .4 transcripts were detected in the thyroid gland but, unlike Hox-1.5 transcripts, were not present generally in tissues that formed the floor of the pharynx (Fig. 48) . Hox-1.4 transcripts were not, therefore, detectable anterior to the thyroid duct . Hox-l .4 transcr ...
... and the lung (Fig. 4D) . Hox-L .4 transcripts were detected in the thyroid gland but, unlike Hox-1.5 transcripts, were not present generally in tissues that formed the floor of the pharynx (Fig. 48) . Hox-1.4 transcripts were not, therefore, detectable anterior to the thyroid duct . Hox-l .4 transcr ...
Selective Crossover in Genetic Algorithms: An Empirical Study
... and is 1 if the clause is satisfied or 0 otherwise. Since the problem generator randomly generates problems on demand, there is no guarantee that such an assignment to the expression exists. The difficulty of the problem increases as a function of the number of boolean variables and the complexity o ...
... and is 1 if the clause is satisfied or 0 otherwise. Since the problem generator randomly generates problems on demand, there is no guarantee that such an assignment to the expression exists. The difficulty of the problem increases as a function of the number of boolean variables and the complexity o ...
Manipulating the Plasmodium Genome
... controlled in Plasmodium. Plasmodium promoters superficially resemble classical eukaryotic promoters transcribed by RNA polymerase II, consisting of a core promoter region controlled by upstream enhancer elements. However, they are functionally distinct from other eukaryotic promoters, as they do no ...
... controlled in Plasmodium. Plasmodium promoters superficially resemble classical eukaryotic promoters transcribed by RNA polymerase II, consisting of a core promoter region controlled by upstream enhancer elements. However, they are functionally distinct from other eukaryotic promoters, as they do no ...
BMC Microbiology
... Indicated are peak 1 (9.2 min; 8,11-diHOD), peak 2 (10,8 min; 5,8-diHOD), peak 2* (10.9 min, λmax 218 nm; lactonized 5,8diHOD), and peak 3 (15.1 min; 8-HOD), the major fatty acid metabolites. RP-HPLC analysis and purification of the fatty acid products were carried out on a Cosmosil 5C18-AR (5 μm; 2 ...
... Indicated are peak 1 (9.2 min; 8,11-diHOD), peak 2 (10,8 min; 5,8-diHOD), peak 2* (10.9 min, λmax 218 nm; lactonized 5,8diHOD), and peak 3 (15.1 min; 8-HOD), the major fatty acid metabolites. RP-HPLC analysis and purification of the fatty acid products were carried out on a Cosmosil 5C18-AR (5 μm; 2 ...
BLSSpeller: exhaustive comparative discovery of
... (osa), Brachypodium distachyon (bdi), Sorghum bicolor (sbi) and Zea mays (zma). We adopt a gene-centric approach, where the promoter sequences of orthologous genes are grouped into gene families. A word-based discovery algorithm was designed to exhaustively report all genome-wide conserved motifs. T ...
... (osa), Brachypodium distachyon (bdi), Sorghum bicolor (sbi) and Zea mays (zma). We adopt a gene-centric approach, where the promoter sequences of orthologous genes are grouped into gene families. A word-based discovery algorithm was designed to exhaustively report all genome-wide conserved motifs. T ...
Conspiracy of silence among repeated transgenes
... conjecture might be correct. When vertebrates are transformed with exogenous DNA, chromosomal insertions almost always consist of long tandem arrays of the transfected transgene-containing DNA.(5) Sometimes transgene arrays can comprise hundreds or even thousands of copies. In a cytologic study of o ...
... conjecture might be correct. When vertebrates are transformed with exogenous DNA, chromosomal insertions almost always consist of long tandem arrays of the transfected transgene-containing DNA.(5) Sometimes transgene arrays can comprise hundreds or even thousands of copies. In a cytologic study of o ...
2q32 deletions and microdeletions FTNP
... How important these problems are depends on how much of the chromosome has been lost and the location of the deletion. Genes and chromosomes Our bodies are made up of billions of cells. Most of the cells contain a set of tens of thousands of genes. Genes act like a set of instructions, controlling o ...
... How important these problems are depends on how much of the chromosome has been lost and the location of the deletion. Genes and chromosomes Our bodies are made up of billions of cells. Most of the cells contain a set of tens of thousands of genes. Genes act like a set of instructions, controlling o ...
ARF-Aux/IAA interactions through domain III/IV are not strictly
... suggest that auxin levels might influence the targeting of ARFs to at least some AuxREs in promoters of auxin response genes. This might occur through direct effects on ARF binding to DNA target sites or through interactions with other transcription factors or chromatin-associated proteins. Potentia ...
... suggest that auxin levels might influence the targeting of ARFs to at least some AuxREs in promoters of auxin response genes. This might occur through direct effects on ARF binding to DNA target sites or through interactions with other transcription factors or chromatin-associated proteins. Potentia ...
Cancer Prone Disease Section Hereditary multiple exostoses (HME) in Oncology and Haematology
... isolated; the EXT1 gene was reported to show linkage in 44%-66% of the HME families, whereas EXT2 would be involved in 27%; additional linkage to chromosome 19p has been found, suggesting the existence of an EXT3 -gene, although loss of heterozygosity studies could not confirm this. Two patients wit ...
... isolated; the EXT1 gene was reported to show linkage in 44%-66% of the HME families, whereas EXT2 would be involved in 27%; additional linkage to chromosome 19p has been found, suggesting the existence of an EXT3 -gene, although loss of heterozygosity studies could not confirm this. Two patients wit ...
Microbial Genetics - University of Montana
... T-even and T-odd phage The T-even phages, T2, T4 and T6, are all related serologically and all have large genomes; T4 has a genome 168,895 bp in length The T-odd phages fall into three serological groups: T3 and T7 are related to each other but not to T1 or to T5, which are unrelated. The T7 genome ...
... T-even and T-odd phage The T-even phages, T2, T4 and T6, are all related serologically and all have large genomes; T4 has a genome 168,895 bp in length The T-odd phages fall into three serological groups: T3 and T7 are related to each other but not to T1 or to T5, which are unrelated. The T7 genome ...
Codon usage bias from tRNA`s point of view
... The selection-mutation-drift theory of codon usage plays a major role in the theory of molecular evolution by explaining the co-evolution of codon usage bias and tRNA content in the framework of translation optimization. Because most studies have focused only on codon usage, we analyzed the tRNA gen ...
... The selection-mutation-drift theory of codon usage plays a major role in the theory of molecular evolution by explaining the co-evolution of codon usage bias and tRNA content in the framework of translation optimization. Because most studies have focused only on codon usage, we analyzed the tRNA gen ...
PDF - Journal of Genomics
... acids and carbohydrates that are abundant in their phloem-based diet or produced by the host. Genomic evidence suggests that several amino acid biosynthetic pathways are shared between aphid and Buchnera, providing the aphid the ability to regulate the endosymbiont’s metabolism (16). No aphid specie ...
... acids and carbohydrates that are abundant in their phloem-based diet or produced by the host. Genomic evidence suggests that several amino acid biosynthetic pathways are shared between aphid and Buchnera, providing the aphid the ability to regulate the endosymbiont’s metabolism (16). No aphid specie ...
Coordination of the maize transcriptome by a conserved circadian
... hybridization values, genes on the array exhibiting circadian waveforms were identified by two well-established methods known as COSOPT and HAYSTACK [26,32]. COSOPT is a method that fits gene expression profiles to a series of modified cosine models, with the agreement between the experimental data ...
... hybridization values, genes on the array exhibiting circadian waveforms were identified by two well-established methods known as COSOPT and HAYSTACK [26,32]. COSOPT is a method that fits gene expression profiles to a series of modified cosine models, with the agreement between the experimental data ...
IOSR Journal of Dental and Medical Sciences (IOSR-JDMS)
... Astanand Jugessur ,Fedik Rahimov , Jeffrey C.Murray Genetic variants in IRF6 and risk of facial clefts: single marker and haplotype-based analyses in a population-based case control study of facial clefts in Norway. 2008 DOI: 10.1002/gepi.20314 Alexandre R Viera , Joseph R Avila , Jill Harrington Me ...
... Astanand Jugessur ,Fedik Rahimov , Jeffrey C.Murray Genetic variants in IRF6 and risk of facial clefts: single marker and haplotype-based analyses in a population-based case control study of facial clefts in Norway. 2008 DOI: 10.1002/gepi.20314 Alexandre R Viera , Joseph R Avila , Jill Harrington Me ...