PpASCL, a moss ortholog of antherspecific chalcone synthaselike
... (de Azevedo Souza et al., 2009), and the DRL genes, encoding dihydroflavonol 4-reductase-like enzymes, were also shown to be integral components of the sporopollenin biosynthesis pathway (Tang et al., 2009; Grienenberger et al., 2010). Expression of these genes is tightly regulated spatially and tem ...
... (de Azevedo Souza et al., 2009), and the DRL genes, encoding dihydroflavonol 4-reductase-like enzymes, were also shown to be integral components of the sporopollenin biosynthesis pathway (Tang et al., 2009; Grienenberger et al., 2010). Expression of these genes is tightly regulated spatially and tem ...
Journal of Bacteriology
... L-2,4-diaminobutyric acid (L-Dab; Sigma-Aldrich) for analysis of polymyxin. LC/MS analysis. P. polymyxa E681 was grown in GSC medium under aerobic conditions at 30°C for 3 days and then centrifuged at 5,000 ⫻ g for 10 min to obtain the supernatant. LC/MS was performed with the supernatant using a hi ...
... L-2,4-diaminobutyric acid (L-Dab; Sigma-Aldrich) for analysis of polymyxin. LC/MS analysis. P. polymyxa E681 was grown in GSC medium under aerobic conditions at 30°C for 3 days and then centrifuged at 5,000 ⫻ g for 10 min to obtain the supernatant. LC/MS was performed with the supernatant using a hi ...
Supplemental Material
... chromosome arm but also to order and orient the scaffolds within the arm. Interestingly, these alignments were largely congruent with the older purely cytological observations confirming the basic accuracy of the earlier observations (ibid). For the more distantly related species, this was not possi ...
... chromosome arm but also to order and orient the scaffolds within the arm. Interestingly, these alignments were largely congruent with the older purely cytological observations confirming the basic accuracy of the earlier observations (ibid). For the more distantly related species, this was not possi ...
PDF
... are found to be enriched for a DNA motif recognised by the protein PRDM9 [11–14]. This protein binds to the DNA motif and catalyses a histone modification that acts as a mark for the formation of a DNA double stranded break in the same location [15]. In species without an active PRDM9, hotspots are ...
... are found to be enriched for a DNA motif recognised by the protein PRDM9 [11–14]. This protein binds to the DNA motif and catalyses a histone modification that acts as a mark for the formation of a DNA double stranded break in the same location [15]. In species without an active PRDM9, hotspots are ...
GENOTYPE-PHENOTYPE CORRELATION USING
... As our programs can be used to correlate any two binary variables which can be optimized on a phylogenetic tree, it was used to find correlations between avian influenza strains and various traits of the species or organisms affected. In particular, we find correlations between spread of influenza a ...
... As our programs can be used to correlate any two binary variables which can be optimized on a phylogenetic tree, it was used to find correlations between avian influenza strains and various traits of the species or organisms affected. In particular, we find correlations between spread of influenza a ...
pdf
... was filtered onto Sterivex capsules (0.2 µm pore size, Millipore, Inc., Bedford, MA, USA) with a peristaltic pump, quick frozen in liquid nitrogen and stored at −80°C until the DNA could be extracted. DNA analyses are reported for samples from the SNM for the open-ocean locations. The sampling depth ...
... was filtered onto Sterivex capsules (0.2 µm pore size, Millipore, Inc., Bedford, MA, USA) with a peristaltic pump, quick frozen in liquid nitrogen and stored at −80°C until the DNA could be extracted. DNA analyses are reported for samples from the SNM for the open-ocean locations. The sampling depth ...
Understanding Reproductive Isolation Based on the Rice
... crossing has been an important strategy for crop genetic improvement, which is hindered by reproductive isolation between species. Based on the stage of occurrence, reproductive isolation can be divided into prezygotic reproductive isolation and postzygotic reproductive isolation. The classical Dobz ...
... crossing has been an important strategy for crop genetic improvement, which is hindered by reproductive isolation between species. Based on the stage of occurrence, reproductive isolation can be divided into prezygotic reproductive isolation and postzygotic reproductive isolation. The classical Dobz ...
Increased sex chromosome expression and epigenetic
... 2006). However, the X and Y chromosomes are continually remodelled during the transition between meiosis and spermiogenesis, and histone modifications associated with transcriptionally active chromatin [e.g. histone acetylation and histone H3 dimethylated on lysine 4 (H3K4me2)] are also enriched on ...
... 2006). However, the X and Y chromosomes are continually remodelled during the transition between meiosis and spermiogenesis, and histone modifications associated with transcriptionally active chromatin [e.g. histone acetylation and histone H3 dimethylated on lysine 4 (H3K4me2)] are also enriched on ...
The Interplay of Temperature and Genotype on Patterns
... Remarkably, they found that the reaction norm did not only cluster genes according to function, but also explained some of the underlying regulatory architecture (Chen et al. 2015b). Extending the plasticity analysis to diverged genotypes often found significant differences in the reaction norm betwe ...
... Remarkably, they found that the reaction norm did not only cluster genes according to function, but also explained some of the underlying regulatory architecture (Chen et al. 2015b). Extending the plasticity analysis to diverged genotypes often found significant differences in the reaction norm betwe ...
Journal of Bacteriology
... ropA encodes a 36-kDa outer membrane protein of Rhizobium leguminosarum bv. viciae strain 248 which constitutes the low-Mr part of antigen group III (R. A. de Maagd, I. H. M. Mulders, H. C. J. Canter Cremers, and B. J. J. Lugtenberg, J. Bacteriol. 174:214–221, 1992). We observed that genes homologou ...
... ropA encodes a 36-kDa outer membrane protein of Rhizobium leguminosarum bv. viciae strain 248 which constitutes the low-Mr part of antigen group III (R. A. de Maagd, I. H. M. Mulders, H. C. J. Canter Cremers, and B. J. J. Lugtenberg, J. Bacteriol. 174:214–221, 1992). We observed that genes homologou ...
A pair of Sox: distinct and overlapping functions of
... expression. The ovary provides sox9b as a maternal message that disappears during cleavage in zebrafish and Xenopus (Chiang et al., 2001; Li et al., 2002; Spokony et al., 2002). In 14 hpf embryos, the expression level of sox9a was high in the otic placode and somites (Fig. 1A). In contrast, the expr ...
... expression. The ovary provides sox9b as a maternal message that disappears during cleavage in zebrafish and Xenopus (Chiang et al., 2001; Li et al., 2002; Spokony et al., 2002). In 14 hpf embryos, the expression level of sox9a was high in the otic placode and somites (Fig. 1A). In contrast, the expr ...
Reactome Functional Interaction (FI) Network
... Output: list of genes that show significant changes in expression. Downstream analysis: 1. Validation of the top genes sorted by fold-change (or p-value): artificial cut-off, information loss; 2. Manual reviewing and gene classification based on literature, databases and own prior experience: time-c ...
... Output: list of genes that show significant changes in expression. Downstream analysis: 1. Validation of the top genes sorted by fold-change (or p-value): artificial cut-off, information loss; 2. Manual reviewing and gene classification based on literature, databases and own prior experience: time-c ...
Structural organization of the transfer RNA gene clusters of cholera
... phage-coded tRNAs. For further analysis it is essential to get an idea about the structural organization of the tRNA genes on the phage genome. It is in this context, that we have constructed a physical map of the tRNA gene cluster of the *Corresponding author. ...
... phage-coded tRNAs. For further analysis it is essential to get an idea about the structural organization of the tRNA genes on the phage genome. It is in this context, that we have constructed a physical map of the tRNA gene cluster of the *Corresponding author. ...
Natural variation in nucleolar dominance reveals
... distinct differences in the NOR chromatin organization in interphase nuclei of LC1 and 9502 (Fig. 5). In LC1, A. arenosalike NORs show partial decondensation at interphase, which is manifest in two ways. One manifestation is the appearance of FISH signal spots in excess of the number of NORs because ...
... distinct differences in the NOR chromatin organization in interphase nuclei of LC1 and 9502 (Fig. 5). In LC1, A. arenosalike NORs show partial decondensation at interphase, which is manifest in two ways. One manifestation is the appearance of FISH signal spots in excess of the number of NORs because ...
Relative Paucity of Genes Causing Inviability in Hybrids
... and five causing severe reductions in hybrid viability. However, the viability of all of these genotypes was at least partially restored by rearing hybrids at lower temperature or using different genetic backgrounds from D. simulans. We therefore detected no D. simulans chromosome regions causing un ...
... and five causing severe reductions in hybrid viability. However, the viability of all of these genotypes was at least partially restored by rearing hybrids at lower temperature or using different genetic backgrounds from D. simulans. We therefore detected no D. simulans chromosome regions causing un ...
Supplemental Tables
... chromosome arm but also to order and orient the scaffolds within the arm. Interestingly, these alignments were largely congruent with the older purely cytological observations confirming the basic accuracy of the earlier observations (ibid). For the more distantly related species, this was not possi ...
... chromosome arm but also to order and orient the scaffolds within the arm. Interestingly, these alignments were largely congruent with the older purely cytological observations confirming the basic accuracy of the earlier observations (ibid). For the more distantly related species, this was not possi ...
Functions of the nonsense-mediated RNA decay pathway in Drosophila development. PLoS Genetics 2 , 2143-2154.
... expression of green fluorescent protein and other transgenes. Mapping and molecular analyses show that photoshop mutations are loss-of-function mutations in the Drosophila homologs of NMD genes Upf1, Upf2, and Smg1. We find that Upf1 and Upf2 are broadly active during development, and they are requi ...
... expression of green fluorescent protein and other transgenes. Mapping and molecular analyses show that photoshop mutations are loss-of-function mutations in the Drosophila homologs of NMD genes Upf1, Upf2, and Smg1. We find that Upf1 and Upf2 are broadly active during development, and they are requi ...
First report of a tetracycline-inducible gene
... Mollicutes are known as having lost most of their regulatory systems during their reductive evolution. Very few regulators have been identified and studies on transcription regulation are still limited (Halbedel et al., 2007; Musatovova et al., 2006; Weiner et al., 2003). In S. citri, the existence ...
... Mollicutes are known as having lost most of their regulatory systems during their reductive evolution. Very few regulators have been identified and studies on transcription regulation are still limited (Halbedel et al., 2007; Musatovova et al., 2006; Weiner et al., 2003). In S. citri, the existence ...
The Complex Inheritance of Maize Domestication Traits and Gene
... was given to shepherd them to completion. Every day and conversation I have had with John as my advisor has made me into a better scientist and I am extremely thankful for the opportunity I was given six years ago when I joined the Doebley lab. I have been fortunate enough to also work in an outstan ...
... was given to shepherd them to completion. Every day and conversation I have had with John as my advisor has made me into a better scientist and I am extremely thankful for the opportunity I was given six years ago when I joined the Doebley lab. I have been fortunate enough to also work in an outstan ...
A MIAME-compliant Microarray Database
... • In the first experiment, they found some genes regulated by addition of GA-4 • They made GFP fusions to three of these genes ...
... • In the first experiment, they found some genes regulated by addition of GA-4 • They made GFP fusions to three of these genes ...
MAGMA manual (version 1.05)
... header) or index, so for example adding ‘use=rsid,6’ will look for SNP IDs in the column named ‘rsid’, and for p-values in the sixth column. The N and ncol modifiers are used to specify the sample size. The N modifier is used to specify the sample size directly (the total sample size, also when usin ...
... header) or index, so for example adding ‘use=rsid,6’ will look for SNP IDs in the column named ‘rsid’, and for p-values in the sixth column. The N and ncol modifiers are used to specify the sample size. The N modifier is used to specify the sample size directly (the total sample size, also when usin ...
Maternal-Effect Genes That Alter the Fate Map of the Drosophila
... able cuticular markers are visible, defects are seen at fs(l)N progeny, but with the difference that the sixth the anterior end of the embryo. The head skeleton is stripe is often positioned still more posteriorly (Fig. lk, reduced (Fig. If, arrow) and the median tooth is absent. arrowhead) or in so ...
... able cuticular markers are visible, defects are seen at fs(l)N progeny, but with the difference that the sixth the anterior end of the embryo. The head skeleton is stripe is often positioned still more posteriorly (Fig. lk, reduced (Fig. If, arrow) and the median tooth is absent. arrowhead) or in so ...
Two distinct teleost hepatocyte nuclear factor 1 genes, hnf1a/tcf1
... muscle and gill. The zygotic expression of zebrafish hnf1a was obviously detected at onset of gastrulation (50% epiboly) and strongly detected from the end of gastrulation (90% epiboly, 10 hpf). Little expression of zebrafish hnf1a was detected from 1- to 1000-cell stage. Zebrafish hnf1b was materna ...
... muscle and gill. The zygotic expression of zebrafish hnf1a was obviously detected at onset of gastrulation (50% epiboly) and strongly detected from the end of gastrulation (90% epiboly, 10 hpf). Little expression of zebrafish hnf1a was detected from 1- to 1000-cell stage. Zebrafish hnf1b was materna ...
