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Opsin genes, cone photopigments, color vision, and color blindness
Opsin genes, cone photopigments, color vision, and color blindness

... base (adenine, guanine, thymine, or cytosine), a phosphate molecule, and a sugar molecule (deoxyribose). Owing to the double-helical structure of DNA, the nucleotide in one DNA strand has a complementary nucleotide in the opposite strand. The two are held together, in nucleotide or base pairs (bp), ...
6.3 Mendel and Heredity
6.3 Mendel and Heredity

... Phenotype is a combination of genotype and environment. • EX: The sex of sea turtles depends on both genes and the environment • EX: Height is another example of a phenotype strongly affected by the environment. ...
Linköping University Post Print Segment-specific Neuronal Sub-type Specification by the Integration of
Linköping University Post Print Segment-specific Neuronal Sub-type Specification by the Integration of

... genes act in three different ways. Posteriorly, Pbx/Meis and posterior Hox genes block lineage progression within an early temporal window, by triggering cell cycle exit. Because Ap neurons are generated late in the thoracic 5–6 lineage, this prevents generation of Ap cluster cells in the abdomen. T ...
BROWSING GENES AND GENOMES WITH ENSEMBL
BROWSING GENES AND GENOMES WITH ENSEMBL

LOCATION OF THE CENTROMERES ON THE LINKAGE
LOCATION OF THE CENTROMERES ON THE LINKAGE

Additional data file 9
Additional data file 9

... are expressed non-exclusively in the imaginal primordia, with additional expression most commonly in the CNS and Ectoderm/Epidermis. Besides the well known imaginal disc embryonic markers, snail (sna), escargot (esg) and Distal-less (Dll) eyeless (ey) and apterous (ap), we discovered CG13894 (THAP ...
Methods for detecting positive selection and examples among fungi
Methods for detecting positive selection and examples among fungi

... Yang et al., 2005; Aris-Brosou, 2006; Scheffler et al., 2006). In most practical situations however BEB appears to be most accurate and has the additional advantage of being fast (Yang et al., 2005). 2.1.3. Variable dN/dS ratios among different lineages in a phylogeny A sensible hypothesis that can b ...
Extensive tRNA gene changes in synthetic Brassica
Extensive tRNA gene changes in synthetic Brassica

... during the process of allopolyploidization has not been well understood. In this study, the inter-tRNA gene corresponding to tRNA amplification polymorphism (ITAP) method was used to detect changes in tRNA gene sequences in the progeny of interspecific hybrids between Brassica rapa and B. oleracea, ...
Updated slides on gene prediction
Updated slides on gene prediction

... An Introduction to Bioinformatics Algorithms ...
Algorithms for Finding Gene Clusters
Algorithms for Finding Gene Clusters

... associated genes of a gene cluster lie on the same DNA strand [20,12]. We take this into account by constructing signed permutations where the sign of a gene indicates the strand it lies on. We then determine all common intervals with the additional restriction that within each permutation, the elem ...
Notch activity induces Nodal expression and mediates the
Notch activity induces Nodal expression and mediates the

Transductional Analysis of Arginineless Mutants in Proteus rnirabilis
Transductional Analysis of Arginineless Mutants in Proteus rnirabilis

... (1967),who concluded that they could constitute an operon (Jacob, Perrin, Sanchez & Monod, 1960). Other workers (Demerec et al. 1960;Sanderson & Demerec, 1965; Armstrong, 1967) found the same arrangement of the corresponding genes in ...
Visualizations of Microarray Data in Partek Genomics Suite 6.6
Visualizations of Microarray Data in Partek Genomics Suite 6.6

... will not select single genes, but all the genes in a region delimited by cutoff lines Although p-value was used to color the plot, the horizontal cut-off value will not match the default coloring scheme, i.e., some non-significant genes will be colored by a shade indistinguishable from the ones used ...
Transcript
Transcript

... maize was teosinte, and it was right in front of us all along. But many varieties of teosinte grow throughout Mexico and Central America, and humans have lived there for thousands of years. So, where and when did they first transform teosinte into maize? Doebley’s team set out to find the answer. Th ...
Updated slides on gene prediction
Updated slides on gene prediction

... An Introduction to Bioinformatics Algorithms ...
Resistance to Antibiotics Mediated by Target Alterations
Resistance to Antibiotics Mediated by Target Alterations

... found in the Far East in the 1960s and 1970s and are now encountered worldwide (15). Gonococci harboring plasmids that express TEM lB-lactamase only emerged in 1976 (15). Meningococci are extremely closely related to gonococci, but surprisingly plasmids expressing TEM lB-lactamase have not yet becom ...
Gene Selection For A Discriminant Microarray Data Analysis
Gene Selection For A Discriminant Microarray Data Analysis

...  Microarray experiments were carried out before and after chemotherapy on the same patient.  Since these two samples are not independent, usual logistic regression can not be applied.  We use paired case-control logistic regression.  Two features: (1) each pair is essentially a sample without a ...
Recombination and epistasis facilitate introgressive hybridization
Recombination and epistasis facilitate introgressive hybridization

... two types of hazard to the endemic species. One is hybrid sterility, which inhibits normal reproduction, and the other is introgressive hybridization, which does not completely retard mating and reproduction by hybridization but instead allows exotic species or local varieties to genetically admix w ...
metabolic core - Chair of Computational Biology
metabolic core - Chair of Computational Biology

Perspectives on Memetics -Cultural Transmission as a
Perspectives on Memetics -Cultural Transmission as a

Yeast Tetrad Analysis The following questions deal with the yeast
Yeast Tetrad Analysis The following questions deal with the yeast

... The following questions deal with the yeast Saccharomyces cerevisiae. Each part is independent. Saccharomyces cerevisiae is haploid. During mating, two haploid cells of opposite mating types fuse and form a diploid zygote, which undergoes meiosis to form a tetrad of four spores. Mating type is regul ...
ppt - Chair of Computational Biology
ppt - Chair of Computational Biology

D. melanogaster - GEP Community Server
D. melanogaster - GEP Community Server

... RAMPAGE = RNA Annotation and Mapping of Promoters for Analysis of Gene Expression CAGE only allows sequencing of short sequence tags (~27 bp) near the 5’ cap Ambiguous read mapping to large parts of the genome ...
Complementary hierarchical clustering
Complementary hierarchical clustering

PpASCL, a moss ortholog of antherspecific chalcone synthaselike
PpASCL, a moss ortholog of antherspecific chalcone synthaselike

... (de Azevedo Souza et al., 2009), and the DRL genes, encoding dihydroflavonol 4-reductase-like enzymes, were also shown to be integral components of the sporopollenin biosynthesis pathway (Tang et al., 2009; Grienenberger et al., 2010). Expression of these genes is tightly regulated spatially and tem ...
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Ridge (biology)

Ridges (regions of increased gene expression) are domains of the genome with a high gene expression; the opposite of ridges are antiridges. The term was first used by Caron et al. in 2001. Characteristics of ridges are:Gene denseContain many C and G nucleobasesGenes have short intronshigh SINE repeat densitylow LINE repeat density↑ 1.0 1.1
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