Horizontal transfer generates genetic variation in an asexual
... homologous elements than the core genome. In addition, we discovered, in LS regions of JR2, several structural forms of nonhomologous recombination, and two or three homologous sequence types of each form, with almost each sequence type present in an LS region of another strain. A large section of o ...
... homologous elements than the core genome. In addition, we discovered, in LS regions of JR2, several structural forms of nonhomologous recombination, and two or three homologous sequence types of each form, with almost each sequence type present in an LS region of another strain. A large section of o ...
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... tively. We find that the accuracy of FirstEF is significantly higher for CpG-related than non-CpG-related genes. To study the performance of FirstEF on the genome scale, we ran it on human chromosomes 21 and 22 and compared the predictions with the experimentally chromosomes 21 and 22. We downloaded ...
... tively. We find that the accuracy of FirstEF is significantly higher for CpG-related than non-CpG-related genes. To study the performance of FirstEF on the genome scale, we ran it on human chromosomes 21 and 22 and compared the predictions with the experimentally chromosomes 21 and 22. We downloaded ...
Modeling Trabecular Microstructure Evolution via Genetic Algorithm by Samuel W. L. Shames
... Trabecular Architectures for evolution for two di↵erent genomes mapped onto the same set of points under the same stress state at three stages of evolution. The figure shows how drastically the microstructure of the system can change in only a small number of generations and how the general tendency ...
... Trabecular Architectures for evolution for two di↵erent genomes mapped onto the same set of points under the same stress state at three stages of evolution. The figure shows how drastically the microstructure of the system can change in only a small number of generations and how the general tendency ...
Biomart/ GENOME ALIGNMENT III
... evolutionary history of species and in identifying functional regions in genomes. The possibilities for identifying regions under selection are enhanced with the addition of more sequences and this observation has led to numerous ‘focused sequencing’ projects which seek to obtain sequence for a smal ...
... evolutionary history of species and in identifying functional regions in genomes. The possibilities for identifying regions under selection are enhanced with the addition of more sequences and this observation has led to numerous ‘focused sequencing’ projects which seek to obtain sequence for a smal ...
PPTX - Tandy Warnow
... • MetaPhyler, MetaPhlAn, and mOTU are marker-based techniques (but use different marker genes). ...
... • MetaPhyler, MetaPhlAn, and mOTU are marker-based techniques (but use different marker genes). ...
Exceptionally high levels of recombination
... as described for low-recombining genomes. Recombination rate does not decrease with chromosome size. On average 5.7 recombination events per chromosome pair per meiosis are found in the honey bee genome. This contrasts with a wide range of taxa that have a uniform recombination frequency of about 1. ...
... as described for low-recombining genomes. Recombination rate does not decrease with chromosome size. On average 5.7 recombination events per chromosome pair per meiosis are found in the honey bee genome. This contrasts with a wide range of taxa that have a uniform recombination frequency of about 1. ...
Genomic Databases for Tomato
... Abstract Tomato (Solanum lycopersicum) is a model plant of the Solanaceae family. Various biological aspects of tomato have been investigated with molecular biological approaches, and a significant amount of DNA and protein sequencing data on tomato has been accumulated. Recently, the number of toma ...
... Abstract Tomato (Solanum lycopersicum) is a model plant of the Solanaceae family. Various biological aspects of tomato have been investigated with molecular biological approaches, and a significant amount of DNA and protein sequencing data on tomato has been accumulated. Recently, the number of toma ...
Specialized Transduction by Bacteriophage P22 in Salmonella typhimurium: Genetic and Physical Structure of the Transducing Genomes and the Prophage Attachment Site.
... genomes can be produced and propagated.-A physical and genetic map of the P22 genome near the prophage attachment site was constructed which shows that the insertion from the R-factor in P22Tc-10 is not a t the attachment site: it is therefore unlikely that P22Tc-10 was formed in an abnormal prophag ...
... genomes can be produced and propagated.-A physical and genetic map of the P22 genome near the prophage attachment site was constructed which shows that the insertion from the R-factor in P22Tc-10 is not a t the attachment site: it is therefore unlikely that P22Tc-10 was formed in an abnormal prophag ...
Structural and Functional Studies of Insertion Element IS200
... promoter located more than 93 base-pairs from its left end. The proposed promot,er and terminator are in proper orientation to form an internal transcription unit. ...
... promoter located more than 93 base-pairs from its left end. The proposed promot,er and terminator are in proper orientation to form an internal transcription unit. ...
Correlation of amino acid preference and
... preference (3-AAP). By pair amino acid preference we mean the preference for certain ordered amino acid pairs. Likewise, triple amino acid preference is used to describe the preference for certain ordered amino acid triples. Three types of analysis are conducted. At the genome level, crossvalidation ...
... preference (3-AAP). By pair amino acid preference we mean the preference for certain ordered amino acid pairs. Likewise, triple amino acid preference is used to describe the preference for certain ordered amino acid triples. Three types of analysis are conducted. At the genome level, crossvalidation ...
Human mitochondrial transfer RNAs: Role of pathogenic
... that continuously reduces oxygen to build up an electrochemical gradient required for ATP synthesis has a potentially deleterious side effect for these eukaryotic cells. This side effect consists of the constant generation of reactive oxygen species (ROS). Due to the continuous function of the elect ...
... that continuously reduces oxygen to build up an electrochemical gradient required for ATP synthesis has a potentially deleterious side effect for these eukaryotic cells. This side effect consists of the constant generation of reactive oxygen species (ROS). Due to the continuous function of the elect ...
Genome Visualisation and Annotation Tools: Artemis and ACT
... This is the main sequence view panel. The central 2 grey lines represent the forward (top) and reverse (bottom) DNA strands. Above and below those are the 3 forward and 3 reverse reading frames. Stop codons are marked as black vertical bars. Genes and other features (eg. Pfam and Prosite matches) ar ...
... This is the main sequence view panel. The central 2 grey lines represent the forward (top) and reverse (bottom) DNA strands. Above and below those are the 3 forward and 3 reverse reading frames. Stop codons are marked as black vertical bars. Genes and other features (eg. Pfam and Prosite matches) ar ...
Evolution, structure and function of mitochondrial carriers: a
... The mitochondrial carriers (MC) constitute a large family (MCF) of inner membrane transporters displaying different substrate specificities, patterns of gene expression and even non-mitochondrial organelle localization. In Arabidopsis thaliana 58 genes encode these six trans-membrane domain proteins ...
... The mitochondrial carriers (MC) constitute a large family (MCF) of inner membrane transporters displaying different substrate specificities, patterns of gene expression and even non-mitochondrial organelle localization. In Arabidopsis thaliana 58 genes encode these six trans-membrane domain proteins ...
(base) sequence of the genome might reflect biological information
... genome base sequences. We analyzed genome structure based on the appearance frequency of genome base sequences [20]. We have studied many genome sequences down-loaded from databases like NCBI [21], and calculated the appearance frequencies of an optional base sequence (key sequence) in a genome. Sub ...
... genome base sequences. We analyzed genome structure based on the appearance frequency of genome base sequences [20]. We have studied many genome sequences down-loaded from databases like NCBI [21], and calculated the appearance frequencies of an optional base sequence (key sequence) in a genome. Sub ...
Gill: Human Disease Genomics
... • There are 8,000 known rare Mendelian diseases • Each can cause over a dozen different phenotypes of 10,000 known disease phenotypes • Together rare Mendelian diseases affect 1 in 33 babies • There are over 20,000 genes in the human genome • Sequencing all genes is cheap, and getting cheaper • We n ...
... • There are 8,000 known rare Mendelian diseases • Each can cause over a dozen different phenotypes of 10,000 known disease phenotypes • Together rare Mendelian diseases affect 1 in 33 babies • There are over 20,000 genes in the human genome • Sequencing all genes is cheap, and getting cheaper • We n ...
Mutation - FSU Biology
... mutations. The exception is reciprocal recombination, where both homologous DNA sequences are broken and rejoined at the same point. This does change the DNA sequence, but its reciprocal nature conserves information. Small-scale alterations of one or a few base pairs are mostly caused by errors in D ...
... mutations. The exception is reciprocal recombination, where both homologous DNA sequences are broken and rejoined at the same point. This does change the DNA sequence, but its reciprocal nature conserves information. Small-scale alterations of one or a few base pairs are mostly caused by errors in D ...
Identification of editing positions in the ndhB transcript from maize
... of the used sequencing primers). The positions of the six editing sites within the sequence of the ndhB coding strand and with respect to the encoded amino acids are indicated in Figure 2. Five of the affected ndhB triplets are edited at the second codon position as was observed for all chloroplast ...
... of the used sequencing primers). The positions of the six editing sites within the sequence of the ndhB coding strand and with respect to the encoded amino acids are indicated in Figure 2. Five of the affected ndhB triplets are edited at the second codon position as was observed for all chloroplast ...
An accessible database for mouse and human whole transcriptome
... Received on January 8, 2013; revised on March 24, 2013; accepted on March 25, 2013 ...
... Received on January 8, 2013; revised on March 24, 2013; accepted on March 25, 2013 ...
Document
... precursors into mature RNAs ready for translation. For example, the splicing process removes extended stretches of the nucleotide sequences called introns from an RNA precursor such that only the remaining RNA sequence codes for a protein. Besides these normal processing events, many novel phenomena ...
... precursors into mature RNAs ready for translation. For example, the splicing process removes extended stretches of the nucleotide sequences called introns from an RNA precursor such that only the remaining RNA sequence codes for a protein. Besides these normal processing events, many novel phenomena ...
transposon
... An insertion sequence is a transposon that codes for the enzyme(s) needed for transposition flanked by short inverted terminal repeats. The target site at which a transposon is inserted is duplicated during the insertion process to form two repeats in direct orientation at the ends of the transp ...
... An insertion sequence is a transposon that codes for the enzyme(s) needed for transposition flanked by short inverted terminal repeats. The target site at which a transposon is inserted is duplicated during the insertion process to form two repeats in direct orientation at the ends of the transp ...
- LSHTM Research Online
... pseudomallei that are as-yet uncharacterized. Confirmation of selected essential genes. In order to confirm the utility of TraDIS for predicting essential genes, we chose four targets to validate individually. To conclusively determine whether these genes were required for growth in vitro, we utiliz ...
... pseudomallei that are as-yet uncharacterized. Confirmation of selected essential genes. In order to confirm the utility of TraDIS for predicting essential genes, we chose four targets to validate individually. To conclusively determine whether these genes were required for growth in vitro, we utiliz ...
Figure 15.6 Nonreplicative transposition allows a transposon to
... Conservative transposition refers to the movement of large elements, originally classified as transposons, but now considered to be episomes. The mechanism of movement resembles that of phage lambda. Nonreplicative transposition describes the movement of a transposon that leaves a donor site (usuall ...
... Conservative transposition refers to the movement of large elements, originally classified as transposons, but now considered to be episomes. The mechanism of movement resembles that of phage lambda. Nonreplicative transposition describes the movement of a transposon that leaves a donor site (usuall ...
A global picture of tRNA genes in plant genomes
... genes became functional once integrated into the nuclear genome, but so far none of them has been shown to be functional (Tian et al., 2007). In the absence of any experimental evidence, we therefore considered them as unexpressed genes and they were not considered as ‘true’ tDNAs. The number of tru ...
... genes became functional once integrated into the nuclear genome, but so far none of them has been shown to be functional (Tian et al., 2007). In the absence of any experimental evidence, we therefore considered them as unexpressed genes and they were not considered as ‘true’ tDNAs. The number of tru ...
15.13 Spm elements influence gene expression
... Conservative transposition refers to the movement of large elements, originally classified as transposons, but now considered to be episomes. The mechanism of movement resembles that of phage lambda. Nonreplicative transposition describes the movement of a transposon that leaves a donor site (usuall ...
... Conservative transposition refers to the movement of large elements, originally classified as transposons, but now considered to be episomes. The mechanism of movement resembles that of phage lambda. Nonreplicative transposition describes the movement of a transposon that leaves a donor site (usuall ...