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analysis of membrane protein dimerization
analysis of membrane protein dimerization

... molecules will contribute to the experimentally determined apparent molecular weight. Judicious choice of detergent and solvent conditions surmounts this obstacle and facilitates evaluation of the mass of only the protein component in a protein–detergent complex. Employing this experimental strategy ...
Poster
Poster

... AH from AKAP binds RIIa-like domains from various proteins. Based on the structural similarity (Figure 3) and cross recognition (Figure 4), we predict that the binding sites for DPY-30 and RIIa domains will share sequence or structural similarities. By studying the interaction of the DPY-30 domain w ...
Unit 3 Exam Enzymes REVIEW
Unit 3 Exam Enzymes REVIEW

... Metabolism: Compare anabolism and catabolism. Give an example of each. Explain how anabolic and catabolic reactions differ in their transfer of energy. What is a metabolic pathway and how are enzymes involved? What is the 1st law of thermodynamics? Give some examples from nature and class. What is t ...
Bennett, Eric: Utilization of primary and secondary structure elements to predict a protein's propensity to form amyloids
Bennett, Eric: Utilization of primary and secondary structure elements to predict a protein's propensity to form amyloids

... neurofibrillar tangles (6). All of these diseases point to a common feature. These aggregation prone proteins are normally soluble with a variety of three-dimensional structures that are stable until some mutation or cellular event triggers a conformational change leading to amyloid formation (7-9). ...
Connect the dots…DNA to Disease, Oltmann
Connect the dots…DNA to Disease, Oltmann

... encodes. The goal is to show students that genes encode proteins, which in turn can cause disease if mutated or function improperly. Background Unfortunately, most students fail to make the connection between DNA sequence, proteins, and protein function to sustain life. The goal of this activity is ...
Connect the dots…DNA to Disease, Oltmann
Connect the dots…DNA to Disease, Oltmann

... encodes. The goal is to show students that genes encode proteins, which in turn can cause disease if mutated or function improperly. Background Unfortunately, most students fail to make the connection between DNA sequence, proteins, and protein function to sustain life. The goal of this activity is ...
HSC 4572: Selected portions Chapter 6
HSC 4572: Selected portions Chapter 6

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Biology and computers
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Breastmilk and Infant Formulas
Breastmilk and Infant Formulas

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several polypeptide chains
several polypeptide chains

Life Without Water: Expression of Plant LEA Genes - The Keep
Life Without Water: Expression of Plant LEA Genes - The Keep

... structures were identified for AfrLEA1 (at least 6) and AfrLEA2 (at least 3). RESULTS AND ANALYSIS Based on data mining of a cDNA library prepared from A. franciscana embryos, coupled with real-time quantitative PCR (rtqPCR), we find that each developmental stage with the capacity for anhydrobiosis ...
Quality Components of Feeds
Quality Components of Feeds

... Proteins are a group of compounds which contain nitrogen. If you know the nitrogen content of a feed, then you can easily determine crude protein, because on average, the mean nitrogen content of crude protein is 16%. A minimum of 15% protein is required to maintain milk production in lactating dair ...
Exam 1
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Chap. 2. Chemical Foundations Topics Chemical Bonds
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... Properties of Water Molecules Water is a polar solvent. It readily dissolves polar and ionic compounds, but not nonpolar hydrocarbons. Water molecules are polar because hydrogen and oxygen atoms have substantially different electronegativities (affinities for electrons) (Fig. 2.5). Because electro ...
Lecture 4: Transcription networks – basic concepts 2.1 Introduction
Lecture 4: Transcription networks – basic concepts 2.1 Introduction

... Promoter: a regulatory region of DNA that precedes the gene Transcription factors can act as activators or as repressors Transcription network describes all regulatory transcription interactions in a cell. In the network, the nodes are genes and edges represent transcriptional regulation of one gene ...
DNA WebQuest
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... Go to the website below. Read the animation page by page – just click the “next” button when you are ready. http://www.wisc-online.com/objects/index_tj.asp?objid=AP1302 1. Describe the role of DNA in the synthesis of mRNA? ...
Solutions to 7.014 Quiz I
Solutions to 7.014 Quiz I

... i) What is the main overall product of the dark reactions of photosynthesis? The overall reaction of photosynthesis is 6CO2+6H2OÆC6H12O6(glucose) +6O2, and the main product is glucose. All enzymatic reactions, including those in glycolysis and the Krebs cycle, are reversible. You decide to study whe ...
Oxy-haemoglobin protein engineering
Oxy-haemoglobin protein engineering

... the integration of several inbuilt databases derived from other bioinformatics tools and all the data generated within short duration to prevent laborious jobs of experiment [27]. This software also helped to incorporate only .pdb file as an input of studied protein without prior knowledge of comput ...
doc Final Exam 2003
doc Final Exam 2003

... 5. What will happen to the resting potential if you slightly increase the extracellular concentration of potassium (say from 4mM to 10mM)? a) it will become transiently depolarized and then return to its normal value. b) it will become transiently hyperpolarized and then return to its normal value. ...
Addition of the keto functional group to the genetic
Addition of the keto functional group to the genetic

Title Gene Synthesis, Expression, and Mutagenesis of Zucchini
Title Gene Synthesis, Expression, and Mutagenesis of Zucchini

... encoding 182 amino acid long precursor stellacyanin from Cucumis sativas, and expressed 109 amino acid non-glycosylated Cu binding domain of that in E. coli (15). It is the only example of phytocyanin gene cloning. Comparison of the primary structure of mavicyanin with those of other cupredoxins sho ...
Proc. Natl. Acad. Sci. USA 96, 4718-4723.
Proc. Natl. Acad. Sci. USA 96, 4718-4723.

... 61). When this cDNA was used to screen an Arabidopsis cDNA library, 12 clones were identified, one of which was fully sequenced. The 986-bp-long cDNA contains an ORF of 213 aa, corresponding to a predicted polypeptide of 22.5 kDa (Fig. 1 A). Database analysis with the amino acid sequence revealed a ...
Recombinant Protein L
Recombinant Protein L

... Protein L has the unique ability to bind through kappa light chain interactions without interfering with the antibody’s antigen-binding site. This gives Protein L the ability to bind a wider range of Ig classes and subclasses than other antibody-binding proteins. Protein L can be used to detect, qua ...
Organic Compounds
Organic Compounds

... Carbohydrates are sugars, or long chains of sugars. An important role of carbohydrates is to store energy. Glucose ( Figure 1.1) is an important simple sugar molecule with the chemical formula C6 H12 O6 . Simple sugars are known as monosaccharides. Carbohydrates also include long chains of connected ...
Amino Acid Catabolism
Amino Acid Catabolism

... • Lysosomal hydrolysis degrades some proteins • Some proteins are targeted for degradation by a covalent attachment (through lysine residues) of ubiquitin (C terminus) • Proteasome hydrolyzes ubiquitinated proteins ...
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Protein–protein interaction



Protein–protein interactions (PPIs) refer to physical contacts established between two or more proteins as a result of biochemical events and/or electrostatic forces.In fact, proteins are vital macromolecules, at both cellular and systemic levels, but they rarely act alone. Diverse essential molecular processes within a cell are carried out by molecular machines that are built from a large number of protein components organized by their PPIs. Indeed, these interactions are at the core of the entire interactomics system of any living cell and so, unsurprisingly, aberrant PPIs are on the basis of multiple diseases, such as Creutzfeld-Jacob, Alzheimer's disease, and cancer.PPIs have been studied from different perspectives: biochemistry, quantum chemistry, molecular dynamics, signal transduction, among others. All this information enables the creation of large protein interaction networks – similar to metabolic or genetic/epigenetic networks – that empower the current knowledge on biochemical cascades and disease pathogenesis, as well as provide putative new therapeutic targets.
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