ppt - Gogarten Lab
... usually not all sites in a sequence are under selection all the time. PAML (and other programs) allow to either determine omega for each site over the whole tree, ...
... usually not all sites in a sequence are under selection all the time. PAML (and other programs) allow to either determine omega for each site over the whole tree, ...
TreeFitter commands
... Tree fitting has important applications in historical biogeography, coevolution and gene tree-species tree fitting [see recent reviews by \Page, 1998 #1419; Ronquist, 1998 #760]. A general characteristic of these problems is that two different kinds of trees are fitted to each other because we are i ...
... Tree fitting has important applications in historical biogeography, coevolution and gene tree-species tree fitting [see recent reviews by \Page, 1998 #1419; Ronquist, 1998 #760]. A general characteristic of these problems is that two different kinds of trees are fitted to each other because we are i ...
final exam in kje-2004
... Sequence similarity: a quantitative measure between two sequences in an alignment. The similarity can be presented as for example percentage similarity. Sequence identity: a quantitative measure between two sequences in an alignment. The similarity can be presented as for example percentage similari ...
... Sequence similarity: a quantitative measure between two sequences in an alignment. The similarity can be presented as for example percentage similarity. Sequence identity: a quantitative measure between two sequences in an alignment. The similarity can be presented as for example percentage similari ...
You can position your opening statement here, either in
... One of the most widely used and practical forms of machine learning and data mining ...
... One of the most widely used and practical forms of machine learning and data mining ...
Measuring Trees
... If distance from tree (D), or "run" is 100 feet, The reading from horizontal to Stump height (A) is 5 feet and tree height above the horizontal plane (B) or "rise" is 80 feet Total Tree height equals A + B = 85 feet ...
... If distance from tree (D), or "run" is 100 feet, The reading from horizontal to Stump height (A) is 5 feet and tree height above the horizontal plane (B) or "rise" is 80 feet Total Tree height equals A + B = 85 feet ...
Chapter 26 Phylogeny and the Tree of Life (working
... mathematical tools when analyzing comparable DNA segments from different organisms ...
... mathematical tools when analyzing comparable DNA segments from different organisms ...
NOTE Phylogenetic analysis of Gram
... distances on the tree, is shown. The tree showed that the Gram-positive bacteria form three groupings, i.e. ...
... distances on the tree, is shown. The tree showed that the Gram-positive bacteria form three groupings, i.e. ...
Lecture 23 (11/16/2007): Population Genetics
... numbers (most significant bit in row 1) and sorting in decreasing ...
... numbers (most significant bit in row 1) and sorting in decreasing ...
Lecture 21 : Introduction to Neutral Theory
... Failure to coalesce within species lineages drives divergence of relationships between gene and species trees ...
... Failure to coalesce within species lineages drives divergence of relationships between gene and species trees ...
DUB(1)
... 1. Does endemism exist among ciliate species? A long-held view in microbial ecology is summed up by the phrase “Everything is everywhere”. In this view, there is no true endemism among microbes, including ciliates, because small organisms have such large absolute population sizes and high dispersal ...
... 1. Does endemism exist among ciliate species? A long-held view in microbial ecology is summed up by the phrase “Everything is everywhere”. In this view, there is no true endemism among microbes, including ciliates, because small organisms have such large absolute population sizes and high dispersal ...
0.8 x 0.8 x 0.2 x 0.2 = 0.0256.
... 5.2 Non-parametric methods We first consider the situation where our data are continuous but may not be Normally distributed, and in fact we do not know what distribution might be appropriate. In these cases, the methods that we have studied so far in this course, t-tests, ANOVA etc. are not approp ...
... 5.2 Non-parametric methods We first consider the situation where our data are continuous but may not be Normally distributed, and in fact we do not know what distribution might be appropriate. In these cases, the methods that we have studied so far in this course, t-tests, ANOVA etc. are not approp ...
Chapter 12 Microbial Evolution and Systematics
... as judged by DNA hybridization experiments. A biovars: variant procaryotic strains characterized by biochemical or physiological differences. Morphovars: differ morphologically Serovars: have distinctive antigenic properties Type strain: it is usually one of the first strains studied and often is mo ...
... as judged by DNA hybridization experiments. A biovars: variant procaryotic strains characterized by biochemical or physiological differences. Morphovars: differ morphologically Serovars: have distinctive antigenic properties Type strain: it is usually one of the first strains studied and often is mo ...
two proofs of cayley`s theorem
... has a simple path from the root to every vertex in the graph. The quantity we will compute in two different ways is the number τ of different sequences of directed edges that can be added to an empty graph on n vertices to yield a rooted tree. First way: we start with a spanning tree on the empty gr ...
... has a simple path from the root to every vertex in the graph. The quantity we will compute in two different ways is the number τ of different sequences of directed edges that can be added to an empty graph on n vertices to yield a rooted tree. First way: we start with a spanning tree on the empty gr ...
Anomaly Detection vi..
... we propose an online over-sampling principal component analysis (osPCA) algorithm to address this problem, and we aim at detecting the presence of outliers from a large amount of data via an online updating technique. Unlike prior PCA based approaches, we do not store the entire data matrix or covar ...
... we propose an online over-sampling principal component analysis (osPCA) algorithm to address this problem, and we aim at detecting the presence of outliers from a large amount of data via an online updating technique. Unlike prior PCA based approaches, we do not store the entire data matrix or covar ...
INTRODUCTION: - the BIOTECH Project
... As a graduate student at the University of Illinois, Bernadette Pace used the annealing of rRNA with genomic DNA to measure the similarity of rRNAs in various species. These experiments demonstrated that rRNA-based methods are applicable to directly comparing a broader range of organisms (i.e., spa ...
... As a graduate student at the University of Illinois, Bernadette Pace used the annealing of rRNA with genomic DNA to measure the similarity of rRNAs in various species. These experiments demonstrated that rRNA-based methods are applicable to directly comparing a broader range of organisms (i.e., spa ...
Document
... Web-accessible repository for DNA microarray data. Password protected Database is being developed to allow authorized users to search for bacteria of interest by city or by time (date). Weather data corresponding to the collection dates will be linked. Given that there are over 9,000 OTUs detecta ...
... Web-accessible repository for DNA microarray data. Password protected Database is being developed to allow authorized users to search for bacteria of interest by city or by time (date). Weather data corresponding to the collection dates will be linked. Given that there are over 9,000 OTUs detecta ...