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Prokaryotes: The First Life on Earth
Prokaryotes: The First Life on Earth

... When we take antibiotics to fight a harmful bacteria, it's usually recommended to consume probiotics, such as yogurt, to replace any of our helpful bacteria that might be accidentally harmed. In fact, most antibiotics themselves are derived from bacteria. They are created in nature by bacteria to fi ...
Mutated DNA
Mutated DNA

Background Knowledge of the Immune System and Autoimmune
Background Knowledge of the Immune System and Autoimmune

... The rationale for this paradigm is for the fundamental understanding of the immune system via autoimmune disease incorporating common laboratory techniques used in most research labs today. The labs incorporated are PCR, restriction digest and gel electrophoresis. This model may be used to introduce ...
Biochemical Defects Associated with Cancer
Biochemical Defects Associated with Cancer

... Creation of Mismatch Containing Plasmid Substrate ...
Leukaemia Section t(14;18)(q32;q21) t(2;18)(p11;q21) t(18;22)(q21;q11)
Leukaemia Section t(14;18)(q32;q21) t(2;18)(p11;q21) t(18;22)(q21;q11)

... IGH is composed of IGHV genes, IGHD segments, IGHJ segments, and IGHC genes. Protein IGH encodes the immunoglobulin heavy chains. They result from the DNA rearrangement (with deletion of the intermediary DNA) of IGHV, IGHD and IGHJ; an additional DNA rearrangement (switch) with constant genes IGHM → ...
Trans-HHS Workshop: Diet, DNA Methylation
Trans-HHS Workshop: Diet, DNA Methylation

... (30), but, as described in the study by Rampersaud and colleagues, a folate replete diet also may restore the DNA methylation status (29). Gene-nutrient interactions in one-carbon metabolism Methylenetetrahydrofolate reductase (MTHFR; EC 1.5.1.20) is considered a key enzyme in the one-carbon metabol ...
Pharmacogenomics Module Presentation
Pharmacogenomics Module Presentation

... DNA variations in special proteins in the liver called enzymes can influence a person’s ability to metabolize certain drugs ...
Morgan and Linkage
Morgan and Linkage

... probability that recombination will occur within 1 kb downstream of our chosen nucleotide is 7(1000) ⇥ 10 9 = 7 ⇥ 10 6 . The probability of a recombination 10 kb downstream of the nucleotide is 7 ⇥ 10 5 ; 100 kb downstream is 7 ⇥ 10 4 ; and 1,000 kb or a million base pairs (a megabase or Mb), 7 ⇥ 10 ...
No Slide Title
No Slide Title

... 1) In Bacteria transcription and translation are initially coupled • RNA polymerase quits if ribosomes lag too much • Recent studies show that ribosomes continue translating once mRNA is complete; i.e after transcription is done ...
bchm6280_lect1_16
bchm6280_lect1_16

... Corn (Z. mays) ...
Visualization of oligonucleotide probes and point mutations in
Visualization of oligonucleotide probes and point mutations in

... poly(T) linker centered around a (CH2)18 spacer. Each circle sequence was designed to have a minimum level of secondary structure or cross hybridization to other circles or decorator probes. The decorator probes had sequences identical to that of a segment of their cognate circle, and each was label ...
Prezentacja programu PowerPoint
Prezentacja programu PowerPoint

... (1-qAC) = (1- qAB)(1- qBC) + qAB qBC (1-qAC) = 1- qAB - qBC + qAB qBC + qAB qBC qAC = qAB + qBC + 2 qAB qBC By putting the values: qAC = 0.20 + 0.20 – 0.08 = 0.32 when map distance (d) = recombnation rate (q), means linkage or in other words, it does not take into account, The occurence of double re ...
물리화학 소개
물리화학 소개

... One-two punch. New detection technique tows a protein into place magnetically, then signals its presence by releasing DNA. Their target was prostate-specific antigen (PSA), a protein that can indicate prostate cancer in men and that is also being investigated as a possible marker for breast cancer i ...
Review for Exam II (Exam this Wed) Bring One of These Multiple
Review for Exam II (Exam this Wed) Bring One of These Multiple

... regulatory sites have cis-acting DNA sequence elements cis-acting sites affect promoters on same DNA molecule trans-acting factors (proteins) bind to the cisacting sites (e.g. repressors) trans-acting factors can affect any DNA molecule in the cell ...
The genome organisation of vertebrates
The genome organisation of vertebrates

... deoxyribonucleic acid (DNA), which is made up of two complementary strands wound around each other to form a double helix (Fig. 1). The building blocks of each DNA strand are deoxyribonucleotides. These are formed by a phosphate ester of deoxyribose (a pentose sugar), linked to one of four bases: tw ...
Exam 2
Exam 2

... D. inherited variation existing within a population. Question 23 Early in 2012, biologists announced the discovery of a new lizard species. To claim that the lizards belong to a new species, the biologists must show that the lizards A. look different from one another. B. look different from known sp ...
AI for Synthetic Biology
AI for Synthetic Biology

... •  Parts used as basis for engineering •  Fluorescent proteins can be observed and used to help understand what is going on in a cell ...
Part B - Modeling Transcription: How is RNA modified? Name:
Part B - Modeling Transcription: How is RNA modified? Name:

... functions as part of an "attach here" sign for ribosomes. The other end of an mRNA molecule, the 3' end, is also modified before the  message exits the nucleus. At the 3' end, an enzyme makes a poly(A) tail consisting of some 50 to 250 adenine nucleotides. Like the  5'  cap,  the  poly(A)  tail  inh ...
htr1A - Utrecht University Repository
htr1A - Utrecht University Repository

... 5-HT functions as a hormone, a mitogen, and a neurotransmitter. Its significance is not only evident from its evolutionary age but also demonstrated by the fact that it is used by one of the most extensive signaling systems found in the brain: from the raphe nuclei of the brain stem, serotonergic ne ...
生物計算
生物計算

... The number of unions is the minimum number of substitutions.  For uninformative site, it is the number of different nucleotides minus one. ...
Genetics Project
Genetics Project

...  Collects and passes out group materials and work  Communicates with the teacher  Assigns a ‘Daily Participation Grade’ for each member of the group  Collects and grades homework for the group when necessary ...
View Full Text-PDF
View Full Text-PDF

... parallel studies. With the mapping of restriction sites, however, they still provide a quick alternative for studying sequence variation in large cross-sections of the genome, and have proved very useful and reasonably accurate for phylogeny reconstruction. The most common use of restriction enzymes ...
Streptococcus Pyogenes Real Time PCR Kit User Manual
Streptococcus Pyogenes Real Time PCR Kit User Manual

... The principle of the real-time detection is based on the fluorogenic 5’nuclease assay. During the PCR reaction, the DNA polymerase cleaves the probe at the 5’ end and separates the reporter dye from the quencher dye only when the probe hybridizes to the target DNA. This cleavage results in the fluor ...
A national scientific reference site network within the Terrestrial
A national scientific reference site network within the Terrestrial

Procedure and Troubleshooting
Procedure and Troubleshooting

... Step 2 The correct bacterial strain has to be chosen for transforming cloning products. Donor plasmids and derivatives contain a conditional origin of replication derived from R6Kγ and have to be propagated in cell strains expressing the pir gene such as BW23474. Acceptor plasmids and derivatives ca ...
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Cre-Lox recombination



In the field of genetics, Cre-Lox recombination is known as a site-specific recombinase technology, and is widely used to carry out deletions, insertions, translocations and inversions at specific sites in the DNA of cells. It allows the DNA modification to be targeted to a specific cell type or be triggered by a specific external stimulus. It is implemented both in eukaryotic and prokaryotic systems.The system consists of a single enzyme, Cre recombinase, that recombines a pair of short target sequences called the Lox sequences. This system can be implemented without inserting any extra supporting proteins or sequences. The Cre enzyme and the original Lox site called the LoxP sequence are derived from bacteriophage P1.Placing Lox sequences appropriately allows genes to be activated, repressed, or exchanged for other genes. At a DNA level many types of manipulations can be carried out. The activity of the Cre enzyme can be controlled so that it is expressed in a particular cell type or triggered by an external stimulus like a chemical signal or a heat shock. These targeted DNA changes are useful in cell lineage tracing and when mutants are lethal if expressed globally.The Cre-Lox system is very similar in action and in usage to the FLP-FRT recombination system.
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