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File - El Paso High School
File - El Paso High School

... Nucleotides consist of a nitrogen-containing base, a pentose sugar, and phosphate groups. They are linked by phosphodiester linkages in condensation reactions to form RNA and DNA. Complementary base pairing by hydrogen bonding is the key to structure and function of these molecules. RNA can be a sin ...
Crystal structure of Cas9 in complex with guide RNA and target DNA
Crystal structure of Cas9 in complex with guide RNA and target DNA

... the nuclease (NUC) lobe. The REC and NUC lobes are connected by a long α helix (named the bridge helix) and a flexible linker. In the structure, the HNH domain is located away from the cDNA cleavage site, indicating that the present structure represents an inactive form, and that the HNH domain unde ...
lec07
lec07

... • The genetic code consists of triplets of nucleotides (codons). Since there are four bases, there are 64 possible codons. • One mRNA codon indicates the starting point of translation and codes for methionine. Three stop codons indicate the end of translation. The other 60 codons code only for parti ...
SAM Teachers Guide Nucleic Acids and Proteins - RI
SAM Teachers Guide Nucleic Acids and Proteins - RI

... The Nucleic Acids and Proteins (formerly Proteins and Nucleic Acids) activity focuses on the basic structure of protein, DNA, and RNA, as well as their monomers, the distribution of charges and polarity, and how charged surfaces contribute to their shape and function. Atomic Structure introduces stu ...
Chapter 13 Mutation, DNA Repair, and Recombination
Chapter 13 Mutation, DNA Repair, and Recombination

... Induced mutations occur upon exposure to physical or chemical mutagens.  Hermann J. Muller and Edgar Alternburg measured the frequency of X-linked recessive lethal mutations in Drosophila.  Muller demonstrated that exposing Drosophila sperm to X-rays increased the mutation frequency. ...
and sensitivity
and sensitivity

... After bisulfite modification, PCR is performed using two sets of primers designed to amplify either methylated or unmethylated alleles. •Often referred to as MSP, or methylation sensitive PCR •Highly sensitive: can detect one methylated allele in a population of > 1000 unmethylated alleles. •Sample ...
No Slide Title
No Slide Title

... Ligate into vector ...
DNA chips: a new tool for genetic analysis and diagnostics
DNA chips: a new tool for genetic analysis and diagnostics

... The reliability of hybridization on the ODN-chip depends largely on both the quality of the surfacebound oligomer and the type of ODN–solid support liaison. The ODN were characterized and purified by HPLC before grafting. The functionalization of the gold electrodes by electrocopolymerization allows ...
Chapter 11
Chapter 11

... • On the lagging strand, growing in the other direction, DNA is made in the 5’-to-3’ direction but synthesis is discontinuous: • DNA is added as short fragments to primers, then the polymerase skips past the 5’ end to make the next fragment. Review Figures 11.16, 11.17 and 11.18 ...
Isolation of plasmid DNA
Isolation of plasmid DNA

... incubate at room temperature for 2 min (NB: at this step the DNA should precipitate out of solution, which might make the solution slightly turbid, however do not worry if there is little visible turbidity- as you are only dealing with microgram quantities).  Pellet the nucleic acid by centrifugat ...
pcr_lab_handout_-_bio1_part_1_updated_3_31_16
pcr_lab_handout_-_bio1_part_1_updated_3_31_16

doc
doc

... incubate at room temperature for 2 min (NB: at this step the DNA should precipitate out of solution, which might make the solution slightly turbid, however do not worry if there is little visible turbidity- as you are only dealing with microgram quantities). 8. Pellet the nucleic acid by centrifugat ...
One of the four bases that combine with sugar and phosphate to
One of the four bases that combine with sugar and phosphate to

Ch 27 bacteria intro..
Ch 27 bacteria intro..

... differ slightly due to mutation. 1/10 million are mutants.. =2,000 mutants per gene made each day in human intestine. X 4.300 genes = 9 million mutants per day per human. Mutations are rare but generation time is short and reproductive rates are high can have a significant impact on genetic diversit ...
Allele: alternative form of a gene, e
Allele: alternative form of a gene, e

... Messenger RNA (mRNA): DNA of a gene is transcribed into mRNA molecules, which then serve as a template for the synthesis of proteins. Metabonome: constituent metabolites in a biological sample. Metabonomics: techniques available to identify the presence and concentrations of metabolites in a biologi ...
Enzyme Discovery and
Enzyme Discovery and

Assay for Methylation of genes
Assay for Methylation of genes

... From kindred’s with HNPCC, MSI is detected in as many as 85-95% of cases. The key characteristic of HNPCC is MSI caused by a defective DNA mismatch repair system. HNPCC accounts for about 3-5% of all colorectal cancer. For patients with suspected HNPCC, an attractive, cost-effective strategy is t ...
Coding DNA into Music: An Alternate Way of Analysis
Coding DNA into Music: An Alternate Way of Analysis

... sequence and function. Furthermore, computational analysis has lacked the power to distinguish signal from noise. For example, there can be up to 50,000 base pairs of DNA that are involved in the expression of one gene, some can change with no effect while others cannot, and it is not clear why. Tes ...
Rapid and High Quality DNA Isolation from Origanum onites for
Rapid and High Quality DNA Isolation from Origanum onites for

... DNA extraction procedure, therefore, is an important issue for many researchers especially those working with economically important crop plants. The isolation of good quality DNA from Origanum is complicated due to its high content of phenolic substances and polysaccharides. It is known that phenol ...
14-3 Human Molecular Genetics
14-3 Human Molecular Genetics

Generation and Analysis of AFLP Data
Generation and Analysis of AFLP Data

... • How much previous sequence knowledge is available? – DNA sequencing, microsatellite amplification, PCR-RFLP, etc. require previous sequence information so that PCR primers can be designed – AFLPs and RAPDs allow genetic fingerprinting when previous sequence knowledge is not available ...
GCSE (9-1) Gateway Biology A Lesson Element Learner Sheet DNA
GCSE (9-1) Gateway Biology A Lesson Element Learner Sheet DNA

... If you read the bases in threes along a gene, it is possible to predict the amino acids that will be made and the order they will be made in. This is the triplet code. Each triplet, a group of three bases, codes for a specific amino acid. ...
Datasheet for Q5® Hot Start High-Fidelity 2X Master Mix
Datasheet for Q5® Hot Start High-Fidelity 2X Master Mix

Site Directed Mutagenesis | NEB
Site Directed Mutagenesis | NEB

GeneToProtein
GeneToProtein

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Replisome



The replisome is a complex molecular machine that carries out replication of DNA. The replisome first unwinds double stranded DNA into two single strands. For each of the resulting single strands, a new complementary sequence of DNA is synthesized. The net result is formation of two new double stranded DNA sequences that are exact copies of the original double stranded DNA sequence.In terms of structure, the replisome is composed of two replicative polymerase complexes, one of which synthesizes the leading strand, while the other synthesizes the lagging strand. The replisome is composed of a number of proteins including helicase, RFC, PCNA, gyrase/topoisomerase, SSB/RPA, primase, DNA polymerase I, RNAse H, and ligase.
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