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Final Exam Review
Final Exam Review

... reaction is this? 3. Give examples ( from throughout the course) of the four types of chemical reactions seen in biological systems. 4. Describe the structure of the following molecules and where each is found: amylose, amylopectin, glycogen. What are the type of linkages that hold these macromolecu ...
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Determination of Protein Concentration

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... and hydrophobic. The side chains of alanine, valine, leucine, and isoleucine tend to cluster together within proteins, stabilizing protein structure by means of hydrophobic interactions.  Glycine has the simplest structure. ...
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... The monomer units are composed of two amino sugars, Nacetylglucosamine (NAG) and N-acetylmuramic acid (NAM), shown on the right. Transglycosidase enzymes join these units by glycoside bonds, and they are further interlinked to each other via peptide cross-links between the pentapeptide moieties tha ...
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... Pepsin hydrolyzes proteins on amino side of Phe, Trp, Tyr. In small intestine acidic contents stimulate secretion of the hormone secretin. Secretin stimulates bicarbonate secretion, bringing pH up to 7. Amino acids stimulate release of hormone cholecystokinin. Cholecystokinin stimulates secretion of ...
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... the protein similarity network. The protein similarity pairs in a protein space could be described as a similarity graph. Every gene family was a connected set in the similarity graph and the density in a connected region implied the degree of the similarity or homologous. It was reasonable to infe ...
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Protein structure prediction



Protein structure prediction is the prediction of the three-dimensional structure of a protein from its amino acid sequence — that is, the prediction of its folding and its secondary, tertiary, and quaternary structure from its primary structure. Structure prediction is fundamentally different from the inverse problem of protein design. Protein structure prediction is one of the most important goals pursued by bioinformatics and theoretical chemistry; it is highly important in medicine (for example, in drug design) and biotechnology (for example, in the design of novel enzymes). Every two years, the performance of current methods is assessed in the CASP experiment (Critical Assessment of Techniques for Protein Structure Prediction). A continuous evaluation of protein structure prediction web servers is performed by the community project CAMEO3D.
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