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Genetic Analysis of the Putative Streptolysin O Regulator from
Genetic Analysis of the Putative Streptolysin O Regulator from

... the latter rarely found in anything other than a select group of Gram positive species that happen to be known well as exotoxin producers such as Anthrax). In recent years, increasing attention has been given to other streptococcal species, partly because innovations in serogrouping methods have led ...
Functional Genomics
Functional Genomics

... assess gene function by making use of the information and reagents provided by structural genomics. It is characterized by high-throughput or large-scale experimental methodologies combined with statistical or computational analysis of the results (Hieter and Boguski 1997) Functional genomics as a m ...
Hands On - Gene Prediction in Prokaryotes file
Hands On - Gene Prediction in Prokaryotes file

... This step follows after the genome of a species has been sequenced. In general, the process includes identifying protein-coding regions, RNA genes, and regulatory regions. The three major categories of gene prediction algorithms are alignment-based, sequence-based, and content-based. Some algorithms ...
Cell diversity - The Physics Teacher
Cell diversity - The Physics Teacher

... cancer e.g. tobacco smoke, asbestos, hydrocarbons in tars, radiation such as UV light, X-rays and uranium, as well as certain viruses. Viruses work by taking over the nucleus of the cell they are attacking. Some viruses appear to damage the oncogenes (cancer-causing genes) of cells and hence may cau ...
Lack of Association in Caucasians and African
Lack of Association in Caucasians and African

... enzyme (20). Another recent study reported the homozygous deletion tion site in the 3'-noncoding region (7); m2, an amino acid exchange of another member of the glutathione S-transferase family called (codon 462: isoleucine—*valine)in the heme-binding domain of exon GS77'I. This deletion occurs in ...
The genome organisation of vertebrates
The genome organisation of vertebrates

... Encyclopedia of the Human Genome—Author Stylesheet very low level in prokaryotes) of noncoding sequences. These can be both intergenic, between genes, and intragenic, within genes. The latter sequences, called introns, separate different coding stretches, or exons, of most eukaryotic genes. The int ...
Chapter 21
Chapter 21

... related sequences are scattered throughout the eukaryotic genome • In primates, a large portion of transposable element–related DNA consists of a family of similar sequences called Alu elements • Many Alu elements are transcribed into RNA molecules; however their function, if any, is ...
POTE Paralogs Are Induced and Differentially Expressed in Many
POTE Paralogs Are Induced and Differentially Expressed in Many

... examined. Further analyses using cDNAs from many cancer samples show that POTE is frequently expressed in breast (12 of 13), prostate (6 of 6), lung (5 of 6), colon (5 of 5), and ovarian (4 of 5) cancer (data not shown). To identify which POTE paralogs were being expressed in cancers, we carried out ...
Allelic Deletions on Chromosome 11q13 in Multiple Endocrine
Allelic Deletions on Chromosome 11q13 in Multiple Endocrine

... somatic LOH of chromosome 11 loci, including the MEN] region, suggesting the role of the MEN] gene in the pathogenesis of such tumors(12—19). Allelic deletions on chromosome 11q13 have been reported in 63—100%of MEN1-associated parathyroid tumors and in 25—35%of sporadic parathyroid tumors (1 ...
A framework for describing genetic diseases
A framework for describing genetic diseases

Export To Word
Export To Word

... 46.01 Investigate the physiology of cancer and discuss how cancerous cells differ from normal/healthy cells. 46.02 Describe the different uses of x-rays, CT scans, and MRI scans. 46.03 Investigate what DNA microarrays measure and how this information is used to determine differences in gene expressi ...
Changing Genetic Technologies
Changing Genetic Technologies

...  Computer analysis compares patient’s genetic material to reference sample ...
EnsEmbl – Genome Browser
EnsEmbl – Genome Browser

... magnitude ...
An informatics approach to analyzing the incidentalome
An informatics approach to analyzing the incidentalome

... • Substantial difference resulted by different assumptions (ignoring SNPs variants) • Stringent requirements on genes having clinical utility raise the thresholds results four orders less (0-2 variants versus 2000 variants by Cassa et al.) returned variants in bin 1. • The specificity of current bin ...
mb_ch12
mb_ch12

... – Pairs of genes that tend to be inherited together are called linked genes. ...
mnw2yr_lec17_2004
mnw2yr_lec17_2004

... Establishing integrated databases – being far from merely a storage ...
Nucleotide-Sugar Transporters in Plants
Nucleotide-Sugar Transporters in Plants

... The GONST promoter in the pCR8 entry vector was transferred to the pGWB3 destination vector via a homologous recombination reaction. The reaction has high site specificity and fidelity and so should always produce a destination vector in which the GONST promoter is in the correct orientation. The de ...
Genetic Disorders - SandersBiologyStuff
Genetic Disorders - SandersBiologyStuff

...  Holandric Traits: genes on the y chromosome; carry genes for male sexual characteristics  Absence of these genes causes female development  Small arm of y chromosome responsible for individuals that have a sex chromosome combination that does not match their appearance XX males and XY females d ...
Chromosomal Polymorphism
Chromosomal Polymorphism

... that could have DNA-binding function SRY = TDF XY sex-reversed females have deletions or mutations of SRY  transgenic mouse model - XX + Sry leads to testis development  SRY expressed in gonad, but only transiently, at the onset of differentiation ...
Genomics of the evolutionary process
Genomics of the evolutionary process

... As well as finding genes, the identification of regulatory regions of genes is another problem that relies on evolutionary conservation. It seemed as though the entire genomics community was expecting the analysis of the mouse genome sequence to identify all the conserved regulatory elements between ...
Homeobox Genes U6[1].
Homeobox Genes U6[1].

Long noncoding RNAs and human disease - e
Long noncoding RNAs and human disease - e

... Upon increased HOTAIR expression, PRC2 gains chromatin occupancy at novel target sites preventing transcription of several metastasis suppressor genes. Silencing of these metastasis-suppressor genes results in breast cancer metastasis [20]. The link between HOTAIR and metastatic disease depends on t ...
Human Genome Project - the Centre for Applied Genomics
Human Genome Project - the Centre for Applied Genomics

... into finite structures called chromosomes (Figure 1). Each organism has a characteristic number of chromosomes. For humans the number is 46 (23 pairs) and this complete set of genetic information is called the genome (Figure 2). DNA, genes and genomes ...
Per cent of children with 1st cousin parents
Per cent of children with 1st cousin parents

... GP, with any patient ...
Study Guide: Chapter 3 and 4 TEST Tuesday 11/03/15 Mendelian
Study Guide: Chapter 3 and 4 TEST Tuesday 11/03/15 Mendelian

... A condition of males since they do not carry 2 homozygous sex chromosomes HEMIZYGOUS The intermediate expression of 2 different alleles (pink) INCOMPLETE DOMINANCE A mutation that results in the death of the organism, usually before they can reproduce LETHAL ALLELE An offspring's phenotype is under ...
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Oncogenomics



Oncogenomics is a relatively new sub-field of genomics that applies high throughput technologies to characterize genes associated with cancer. Oncogenomics is synonymous with ""cancer genomics"". Cancer is a genetic disease caused by accumulation of mutations to DNA leading to unrestrained cell proliferation and neoplasm formation. The goal of oncogenomics is to identify new oncogenes or tumor suppressor genes that may provide new insights into cancer diagnosis, predicting clinical outcome of cancers, and new targets for cancer therapies. The success of targeted cancer therapies such as Gleevec, Herceptin, and Avastin raised the hope for oncogenomics to elucidate new targets for cancer treatment.Besides understanding the underlying genetic mechanisms that initiates or drives cancer progression, one of the main goals of oncogenomics is to allow for the development of personalized cancer treatment. Cancer develops due to an accumulation of mutations in DNA. These mutations accumulate randomly, and thus, different DNA mutations and mutation combinations exist between different individuals with the same type of cancer. Thus, identifying and targeting specific mutations which have occurred in an individual patient may lead to increased efficacy of cancer therapy.The completion of the Human Genome Project has greatly facilitated the field of oncogenomics and has increased the abilities of researchers to find cancer causing genes. In addition, the sequencing technologies now available for sequence generation and data analysis have been applied to the study of oncogenomics. With the amount of research conducted on cancer genomes and the accumulation of databases documenting the mutational changes, it has been predicted that the most important cancer-causing mutations, rearrangements, and altered expression levels will be cataloged and well characterized within the next decade.Cancer research may look either on the genomic level at DNA mutations, the epigenetic level at methylation or histone modification changes, the transcription level at altered levels of gene expression, or the protein level at altered levels of protein abundance and function in cancer cells. Oncogenomics focuses on the genomic, epigenomic, and transcript level alterations in cancer.
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