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For SNP microarray analysis processed before Oct. 15, 2012
For SNP microarray analysis processed before Oct. 15, 2012

... with the Illumina HD HumanOmni1-quad BeadChip platform. This chip contains approximately 1,140,419 probes including both single nucleotide polymorphisms (SNP) and non-SNP alleles. The test is used to identify chromosomal imbalances throughout the human genome. These imbalances include deletions, dup ...
Primer extension technique for the detection of single nucleotide in
Primer extension technique for the detection of single nucleotide in

... DNA alteration is known, it is quite enough to determine which nucleotide (normal or substituted) is present in certain site of the gene. I describe here simple and fast technique for detection of single nucleotide in certain position of genomic DNA which may be adopted to any genetic disease with k ...
12 RNA Activity
12 RNA Activity

... to  solve  to  attach  it?    Did  it  attach  the  way  you  thought  it  would?       Question:    Why  would  scientists  want  to  tag  certain  microbes  using  rRNA  sequences?   ...
Supplementary Methods and Tables Supplementary Methods ChIP
Supplementary Methods and Tables Supplementary Methods ChIP

... Sequence analysis of AML1-ETO-binding regions Sequence analysis of the DNA regions bound by transcription factors can be performed through bioinformatics approaches that yield different kinds of information. Supervised approaches search for the presence of defined matrices within a group of sequenc ...
Microarray Analysis 1
Microarray Analysis 1

... These spots form a two dimensional array. Each spot in the array contains millions of copies of some DNA strand, bonded to the chip. Chips are made tiny so that a small amount of RNA is needed from experimental cells. ...
Monday - Biostatistics
Monday - Biostatistics

... Essentials of Microarray Experimental Design: • Probe sequence selection & design • Probe deposition on solid support • Target Labeling • Target Hybridization ...
Last Year`s Exam 2
Last Year`s Exam 2

... a) is caused by the same chromosomal abnormality that causes Angelman’s Syndrome b) is caused by inheritance of a microdeletion from the father c) is characterized by obesity due to overeating d) is due to genomic imprinting e) all of the above ...
PCR Study Questions
PCR Study Questions

Unit1-Probesweb
Unit1-Probesweb

... the presence of specific sequences in DNA. (Do not get probes mixed up with the primers used in PCR.) • What characteristics will DNA probes need to have? ...
AP Biology - gwbiology
AP Biology - gwbiology

... follow at first but at least copy the main ideas before we go over it in class. ...
Genomics 1 The Genome
Genomics 1 The Genome

... the genotypes of the animal for 10,000 SNP could be determined for a cost of about $350 per animal. The goal of a USDA-dairy industry project started in 2006 was to discover Quantitative Trait Loci (i.e. genes) that had large, significant effects on various traits in cattle. Researchers went through ...
What Can You Do With qPCR?
What Can You Do With qPCR?

... SNP variation is detected by binding sequence-specific anchor and and sensor probes next to each other and a signal is generated by FRET. A single base change will lead to an earlier melting temperature of the probe-target complex. The melting temperatures (Tms) will be different for amplicons with ...
FISH
FISH

... Designed to hybridize to highly repetitive alpha satellite sequences surrounding centromeres. These probes detect aneuploidy of any chromosome. Combinations of centromeric probes and region-specific probes are often used to confirm deletions or amplifications in specific ...
Cytogenetic and molecular cytogenetic analysis in clinical genetics
Cytogenetic and molecular cytogenetic analysis in clinical genetics

... Hybridization: The probe will hybridize or bind to its complementary sequences in the cellular DNA Fluorescence staining The bound probe can be visualized under a fluorescent microscope in the nucleus of the cell ...
7echap20guidedreading
7echap20guidedreading

... 9. What is a complementary, short, single stranded nucleic acid that can be either DNA or RNA called? ...
An Introduction to Affymetrix Microarrays
An Introduction to Affymetrix Microarrays

... renormalizing all. These will not work well if the arrays are not comparable. (e.g. RNA degradation experiments). Is this reasonable? In comparing A and B, should it matter if condition C is included in the data? This problem is not unique to normalization. It also occurs with any statistical method ...
Electrical Biosensors in Microfluidic for High Throughput Genomics and Proteomics   
Electrical Biosensors in Microfluidic for High Throughput Genomics and Proteomics   

... Clark Center Auditorium  (Basement, entrance across from Nexus)  ...
AP Biology
AP Biology

... at first but at least copy the main ideas before we go over it in class. ...
John Okyere`s TARGET talk
John Okyere`s TARGET talk

... • Circadian Rhythm- What is the time interval between time course samples? • Nutrient- Media types will affect expression levels • Tissue- Each cell type has different expression pattern • Temperature- Growth room temperature may vary within a 24h period • Disease- Defense genes will alter global ge ...
Library screening
Library screening

... break open (disrupt) the phage protein coat and denature and fix the DNA in situ There are then probed with a labeled DNA fragment which will hybridize to the sequence of interest The position of hybridization signal is determined by autoradiography and used to identify the colony or plaque containi ...
Tracer Development for Molecular Imaging
Tracer Development for Molecular Imaging

... metabolism, etc. 19F – Drug metabolism, pH, Ca2+ and other metal ion concentration, pO2, temperature, etc. 2H – Perfusion, drug metabolism, tissue and cartilage structure. In vivo detection sensitivity limits use of C-13 and F-19 molecular probes (C-13 requires >0.1mM, F-19 >5 mM) ...
No Slide Title
No Slide Title

... – Mating is random (but there is stratification and assortative mating) – Population is large (if appropriately chosen!) – No mutation (but there is) – No migration (but migration occurs) – No selection (but there can be selection) ...
Karyotyping, FISH and CGH array
Karyotyping, FISH and CGH array

... A single nucleotide polymorphism (SNP), a variation at a single site in DNA, is the most frequent type of variation in the genome. For example, there are around 50 million SNPs that have been identified in the human genome. Most of them are non pathological. The basic principles and techniques of SN ...
Worksheet for 4/16
Worksheet for 4/16

... gel electrophoresis. Diagram a gel including electric charge, and labeled fragments. ...
sample report - Integrated Genetics
sample report - Integrated Genetics

... chromosome of >20 Mb interstitially or >10 Mb telomerically (15 and 8 Mb, respectively, for imprinted chromosomes). * Contiguous homozygosity of >8 Mb within multiple chromosomes suggests common descent. These regions of potential recessive allele risk are designated. * A high level of allele homozy ...
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Molecular Inversion Probe



Molecular Inversion Probe (MIP) belongs to the class of Capture by Circularization molecular techniques for performing genomic partitioning, a process through which one captures and enriches specific regions of the genome. Probes used in this technique are single stranded DNA molecules and, similar to other genomic partitioning techniques, contain sequences that are complementary to the target in the genome; these probes hybridize to and capture the genomic target. MIP stands unique from other genomic partitioning strategies in that MIP probes share the common design of two genomic target complementary segments separated by a linker region. With this design, when the probe hybridizes to the target, it undergoes an inversion in configuration (as suggested by the name of the technique) and circularizes. Specifically, the two target complementary regions at the 5’ and 3’ ends of the probe become adjacent to one another while the internal linker region forms a free hanging loop. The technology has been used extensively in the HapMap project for large-scale SNP genotyping as well as for studying gene copy alterationsand characteristics of specific genomic loci to identify biomarkers for different diseases such as cancer. Key strengths of the MIP technology include its high specificity to the target and its scalability for high-throughput, multiplexed analyses where tens of thousands of genomic loci are assayed simultaneously.
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