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Overview of Eukaryotic Gene Prediction
Overview of Eukaryotic Gene Prediction

... • The discrete nature of DNA allows us to treat it as a sequence of A’s, C’s, G’s, and T’s • DNA is replicated during cell division • Only mutations on the germ line may lead to evolutionary changes ...
Lab 12
Lab 12

... sequences -each enzyme recognizes and cuts DNA at a different base sequence e.g. BamHI XXXXXXXXGGATCCXXXXXXXXXX XXXXXXXXCCTAGGXXXXXXXXXX -due to spontaneous mutations over time, different people have slightly different base sequences in their DNA -if mutation creates or deletes a restriction site in ...
Document
Document

... • The discrete nature of DNA allows us to treat it as a sequence of A’s, C’s, G’s, and T’s • DNA is replicated during cell division ...
Genes: Structure, Replication, & Mutation
Genes: Structure, Replication, & Mutation

... DNA nucleotides, by DNA polymerase enzymes. In E. coli, DNA polymerase I is responsible for most of this activity. In addition, DNA polymerases “proofread” the new strands during replication, oftentimes (but not always) excising mismatched bases and thereby correcting mistakes to prevent mutation ...
Lecture 6 S - BEHESHTI MAAL
Lecture 6 S - BEHESHTI MAAL

... Frame shift mutation – One or a few nucleotide pairs are deleted or inserted in the DNA – Shifts the translation reading frame – Almost always result in a long stretch of altered amino acids – Inactive protein ...
Cyanovirin-N
Cyanovirin-N

... • Binding of GP120 is essential but not sufficient for virostatic activity. ...
Chapter 16: Genome Analysis: DNA Typing, Genomics, and
Chapter 16: Genome Analysis: DNA Typing, Genomics, and

... • Example: Rare structural variations in genes that affect neuronal development and signaling. • These CNVs may account for much of the heritability underlying autism. • Each person with autism may carry a unique set of “autism loci,” but the biological pathways affected by these CNVs are likely to ...
Bio290-08-Week 9
Bio290-08-Week 9

... • More common in plants • Correlation between the number of chromosome sets and size of organism • Autopolyploids: multiple chromosomes from one species • Allopolyploids: sets of chromosomes from two or more different species ...
DNA REVIEW for TEST2016
DNA REVIEW for TEST2016

... 3. Chargaff’s Rule( You will be given the % of the bases of DNA in one strand and must be able to determine the % of bases in the double strand. 4. Watson and Crick-Explain their contribution to the discovery of DNA. 5. Explain the structure of DNA.(What is a nucleotide?) 12.2 DNA Replication 1. Lis ...
Paper Plasmid activity - Liberty Union High School District
Paper Plasmid activity - Liberty Union High School District

... 13. Congratulations, you have successfully cloned a gene! You now have a single plasmid with a new gene and can use that to transform a single bacterium. The bacterium will now make green Jellyfish glow protein and will glow under black light. ANALYSIS QUESTIONS (use your notes & this lab to answer ...
The DNA of microorganisms is made up of subunits called A
The DNA of microorganisms is made up of subunits called A

... The site where the old DNA strands separate and new DNA strands will be synthesized is called the A. primer. B. Okazaki fragment. C. template. D. rolling circle. E. replication fork. ...
1. (a) When a cell divides, the genetic material can divide by mitosis
1. (a) When a cell divides, the genetic material can divide by mitosis

... dominant to the allele b for black body. Explain why, in the offspring of a mating between a pure-breeding black female and a yellow male, all the males will be black. ...
CHAPTER 10
CHAPTER 10

... have been sequenced. • In 2004 the “finished” version of the human genome was reported. – It contains about 20,000 genes. – Alternate splicing of messenger RNA may account for several proteins from one gene. – Post-translational modifications also account for different protein functions. ...
human-genome-project
human-genome-project

... the number of gene family members has expanded in humans, especially in proteins involved in development and immunity. Scientists have identified about 3 million locations where single-base DNA differences (SNPs) occur in humans. This information promises to revolutionize the processes of finding ch ...
Question 1
Question 1

... d. (2 pts) Name any conserved domains and their function. Based on what you now know about protein Y, is this domain crucial to its function? Answer: there are two zinc finger domains present in this protein. One of the common functions of zinc fingers is to bind the major grove of DNA. Back on the ...
Mock Exam 3 Chapters 14-18 Anthony Todd  http
Mock Exam 3 Chapters 14-18 Anthony Todd http

... b. III only c. I and II d. I and III e. I, II, and III 48. What are control elements found thousands of nucleotides upstream or downstream of a gene? a. Transcription factors b. Enhancers c. Promoters d. Activators e. Operators 49. Which of the following is not a way that genes can be regulated by t ...
Quarter 1 Section 1.7 Name:
Quarter 1 Section 1.7 Name:

... builders how to construct a house, the DNA "blueprint" tells the cell how to build the organism. Yet, how can a heart be so different from a brain if all the cells contain the same instructions? Although much work remains in genetics, it has become apparent that a cell has the ability to turn off mo ...
Biotechnology Pre/PostTest Key (w/citations)
Biotechnology Pre/PostTest Key (w/citations)

... Piecescan of DNA from twoown different organisms can be joined They produce their pesticides They can grow larger than unmodified crops Genescannot from complex such as animals can be inserted into simpler organisms They cause an organisms allergic reaction Theysuch can as contain extra nutrients ba ...
Slide 1
Slide 1

... The sequences of some artificial plasmids include a "linker" that contains dozens of restriction enzyme recognition sequences within a very short segment of DNA. Restriction Enzyme/s ...
Genomes and sequence alignment
Genomes and sequence alignment

... Partially assembled into reasonably sized contigs/scaffolds to a few X coverage Can still contain substantial contamination and error, but very usable if you don't trust specifics Miscellany GenBank accepts any identified sequence: Plasmids, chromosomes, individual transcripts, different clones/inse ...
RNA removal by double-RNase digestion
RNA removal by double-RNase digestion

... This protocol uses two ribonucleases for double-digestion of RNA because treatment with Ribonuclease A alone is not sufficient to degrade RNA into alcohol-soluble fragments. This is because Ribonuclease A cleaves only at U- and C-nucleotides, leaving fragments large enough to be precipitated with al ...
Genetic Engineering
Genetic Engineering

... in your large intestine, bacteria on your skin, bacteria that decompose dead organisms…. ...
DNA Characteristics
DNA Characteristics

... What are the three parts of a nucleotide? Which parts make up the backbone of a DNA strand? List the two base pairs found in DNA. If six bases on one strand of a DNA double helix are AGTCGG, what are the six bases on the complementary section of the other strand of DNA? ...
MCB Lecture 1 – Molecular Diagnostics
MCB Lecture 1 – Molecular Diagnostics

... How many cycles must you perform via PCR before you get the first exact sample that you want to amplify? o 4 Cycles If you have a single base difference in sequence that does not affect a restriction site, how do you detect it? o Use PCR and then ASO probes. o The mutation must be known, and it is s ...
Extracting DNA from Cells
Extracting DNA from Cells

... water and I shake it with oil, it will stay in the water layer. – If I put something in the water layer that is more soluble in oil, if I shake oil and water together it will transfer to the oil layer. I have extracted it from the water layer, or phase. ...
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Zinc finger nuclease

Zinc-finger nucleases (ZFNs) are artificial restriction enzymes generated by fusing a zinc finger DNA-binding domain to a DNA-cleavage domain. Zinc finger domains can be engineered to target specific desired DNA sequences and this enables zinc-finger nucleases to target unique sequences within complex genomes. By taking advantage of endogenous DNA repair machinery, these reagents can be used to precisely alter the genomes of higher organisms.
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