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Plant Genome Mapping: Strategies And Applications
Plant Genome Mapping: Strategies And Applications

Probe design for microarrays using OligoWiz
Probe design for microarrays using OligoWiz

Description
Description

... Nested PCR: increases the specificity of DNA amplification, by reducing background due to non-specific amplification of DNA. Two sets (instead of one pair) of primers are used in two successive PCRs. In the first reaction, one pair of primers is used to generate DNA products, which besides the inten ...
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Principle of TAIL-PCR

Molecular biology technique (I) Southern/Northern
Molecular biology technique (I) Southern/Northern

... • Hybridization-process of forming a doublestranded DNA molecule between a singlestranded DNA probe and a single-stranded target patient DNA. ...
DNA Microarrays to treat cancer
DNA Microarrays to treat cancer

... An ideal custom DNA microarray platform should allow a user complete freedom in defining which genes are assayed using the array. The microarray platform should also be compatible with computerbased probe design software and molecular methods so that measurements can be performed with high sensitivi ...
Biotechnology toolkit part 2
Biotechnology toolkit part 2

... Exons are the coding parts of a gene and introns are the non-coding parts of a gene which are removed before translation (splicing). About 90% of the human genome has no known function and mainly consists on intron. Exons that code for the amino acid sequence in essential proteins vary little, sinc ...
Cells in culture.
Cells in culture.

... a direct comparison of their relative levels of gene expression. These samples are converted to cDNA and labeled, one with a red fluorochrome, the other with a green fluorochrome. The labeled samples are mixed and then allowed to hybridize to the microarray. After incubation, the array is washed and ...
DNA Replication Reading - Lesley Anderson`s Digital Portfolio
DNA Replication Reading - Lesley Anderson`s Digital Portfolio

... strands as they are exposed. DNA polymerases bond the nucleotides together to form new strands that are complementary to each template strand. DNA replication occurs in a smooth, continuous way on one of the strands. Due to the chemical nature of DNA polymerase, replication of the other strand is mo ...
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Genomics 1

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Lecture 14: Nucleic Acids and DNA Replication

... The two strands are anti-parallel--the two complementary strands run in opposite directions The strands have polarity--at the 3' end, a OH is attached to the 3' carbon of the terminal deoxyribose; at the 5' end, a phosphate is attached to the 5' carbon of the terminal deoxyribose DNA polymerase can ...
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Suppl. Material

... into pJET1.2/blunt cloning vector and transformed into E. coli MC1061 competent cells. This vector contains a lethal gene which is disrupted by ligation of the DNA insert into the cloning site. As a result, only cells with recombinant plasmids are able to propagate, eliminating the need for expensiv ...
DNA MUTATIONS AND THEIR REPAIR
DNA MUTATIONS AND THEIR REPAIR

... 1. Techniques of molecular biology are used in the prevention and treatment of disease. For example, recombinant DNA techniques provide human insulin for the treatment of diabetes, Factor VIII for the treatment of hemophilia, and vaccines for the prevention of hepatitis. Although treatment of diseas ...
Lecture 1. - Government Degree College Pulwama
Lecture 1. - Government Degree College Pulwama

... recombinant proteins and other products that result from the use of rDNA technology are found in essentially every western pharmacy, doctor’s or veterinarian’s office, medical testing laboratory and biological research laboratory. In addition, organisms that have been manipulated using recombinant D ...
Bio101 Development Guide.pages
Bio101 Development Guide.pages

... 2. Get the index of sub sequences and P, check the index by parity-check. Then, order the sub sequences by analyzing that starting with A or T and ending with C or G. 3. Check the sub sequences which have the same index by fuzzy algorithm and get the correct sub sequence of each index. 4. Split the ...
biological background the central dogma of molecular biology
biological background the central dogma of molecular biology

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Quantification of Mycobacterium Tuberculosis 150 tests

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DNA databases Rape in the US Victims States with Offender Laws

... authorized to collect and database DNA samples from arrestees). If there is a candidate match, the laboratory will go through procedures to confirm the match and, if confirmed, will obtain the identity of the suspected perpetrator. Once a match is identified, the laboratories involved in the match e ...
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Leukaemia Section t(1;1)(p36;q21) in non Hodgkin lymphoma Atlas of Genetics and Cytogenetics

... mutations are necessary to generate a fully malignant clonal proliferation. Many of these secondary genetic alterations (including chromosome 1) are visible in the clonal karyotype; it is now possible to identify the sequence by which they arise and their influence on clinical behavior by using comp ...
DNA Analysis
DNA Analysis

... People in the News Sir Alec Jereys is credited with developing DNA profiling using RFLP. In September of 1984, after years of work, he saw his first series of blots on an X ray. The technique was first used in forensics when, in 1985, he was asked by police to confirm the rape confession of 17-year ...
Forensics Ch 12
Forensics Ch 12

... DNA degraded to fragments only a few hundred base pairs in length can serve as effective templates for amplification. Large numbers of copies of specific DNA sequences can be amplified simultaneously with multiplex PCR reactions. Commercial kits are now available for easy PCR reaction setup and ampl ...
Where Is DNA Found?
Where Is DNA Found?

... DNA degraded to fragments only a few hundred base pairs in length can serve as effective templates for amplification. Large numbers of copies of specific DNA sequences can be amplified simultaneously with multiplex PCR reactions. Commercial kits are now available for easy PCR reaction setup and ampl ...
Lecture
Lecture

Roundup Ready Canola RT73 DNA Detection Method
Roundup Ready Canola RT73 DNA Detection Method

recBCD
recBCD

... Practical Uses of Recombination 1. Used to map genes on chromosomes (recombination frequency proportional to distance between genes) 2. Making transgenic cells and animals ...
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Comparative genomic hybridization



Comparative genomic hybridization is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells. The aim of this technique is to quickly and efficiently compare two genomic DNA samples arising from two sources, which are most often closely related, because it is suspected that they contain differences in terms of either gains or losses of either whole chromosomes or subchromosomal regions (a portion of a whole chromosome). This technique was originally developed for the evaluation of the differences between the chromosomal complements of solid tumor and normal tissue, and has an improved resoIution of 5-10 megabases compared to the more traditional cytogenetic analysis techniques of giemsa banding and fluorescence in situ hybridization (FISH) which are limited by the resolution of the microscope utilized.This is achieved through the use of competitive fluorescence in situ hybridization. In short, this involves the isolation of DNA from the two sources to be compared, most commonly a test and reference source, independent labelling of each DNA sample with a different fluorophores (fluorescent molecules) of different colours (usually red and green), denaturation of the DNA so that it is single stranded, and the hybridization of the two resultant samples in a 1:1 ratio to a normal metaphase spread of chromosomes, to which the labelled DNA samples will bind at their locus of origin. Using a fluorescence microscope and computer software, the differentially coloured fluorescent signals are then compared along the length of each chromosome for identification of chromosomal differences between the two sources. A higher intensity of the test sample colour in a specific region of a chromosome indicates the gain of material of that region in the corresponding source sample, while a higher intensity of the reference sample colour indicates the loss of material in the test sample in that specific region. A neutral colour (yellow when the fluorophore labels are red and green) indicates no difference between the two samples in that location.CGH is only able to detect unbalanced chromosomal abnormalities. This is because balanced chromosomal abnormalities such as reciprocal translocations, inversions or ring chromosomes do not affect copy number, which is what is detected by CGH technologies. CGH does, however, allow for the exploration of all 46 human chromosomes in single test and the discovery of deletions and duplications, even on the microscopic scale which may lead to the identification of candidate genes to be further explored by other cytological techniques.Through the use of DNA microarrays in conjunction with CGH techniques, the more specific form of array CGH (aCGH) has been developed, allowing for a locus-by-locus measure of CNV with increased resolution as low as 100 kilobases. This improved technique allows for the aetiology of known and unknown conditions to be discovered.
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