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5.36 Biochemistry Laboratory
5.36 Biochemistry Laboratory

... • Ni-NTA resin is damaged by high concentrations of strong reducing agents. • In certain cell systems (e.g. insect), acidic media is required, which can prevent His from binding to Ni-NTA • Certain proteins have native polyHis patches. ...
Protein Purification Affinity purification
Protein Purification Affinity purification

... Strep-tag II binds Strep-Tactin nearly 100 times tighter than streptavidin, but elutes under gentle, physiological conditions. Rapid, one-step affinity purification results in active fusion proteins of highest purity. Physiological buffers like PBS in combination with a wide range of detergents, che ...
"Neurotransmitter Receptors in the Postsynaptic Neuron". In
"Neurotransmitter Receptors in the Postsynaptic Neuron". In

... itself has structural (but not amino acid sequence!) homology to the protein bacteriorhodopsin, and homology with rhodopsin, the light-harvesting protein expressed in the eye. Metabotropic neurotransmitter receptors are, mostly, single subunit receptors. Each receptor has seven transmembrane-spannin ...
Tertiary Structure
Tertiary Structure

... 1). Secondary structures are arranged in a few common patterns - i.e, resulting in protein “families”. 2). Proteins fold to form the most stable structure. Stability arises from: formation of large number of intramolecular hydrogen bonds reduction in hydrophobic surface area from solvent ...
Pymol Tutorial
Pymol Tutorial

... proteins are homologous and having a percentage identity of 65% with each other. It is advisable to place them as cartoon. We can put both together as in cartoon 'all' → 'S + as + cartoon': ...
Ming Li Talk about Bioinformatics - the David R. Cheriton School of
Ming Li Talk about Bioinformatics - the David R. Cheriton School of

...  Being homologous means that they have ...
Cellular Structures I
Cellular Structures I

... a. What do we mean when we say a cell is polarized? A: it has two regions, with two distinct functions b. This is a typical epithelial columnar cell, with an apical region and basal region c. A lymphocyte is a non-polarized cell (round, free floating) d. A neuron is a good example of a polarized cel ...
Antonie van Leeuwenhoek
Antonie van Leeuwenhoek

... of sufficient amounts of a certain nutrient, the cell is often able to synthesize new outer membrane protein pores to overcome this problem. For example, protein e and the bacteriophage ~ receptor are synthesized by cells growing under phosphate limitation and in the presence of maltose, respectivel ...
Aalborg Universitet Christiansen, Gunna; Sennels, Lau; Stensballe, Allan; Birkelund, Svend
Aalborg Universitet Christiansen, Gunna; Sennels, Lau; Stensballe, Allan; Birkelund, Svend

... a DUF582 protein previous shown to be secreted by the type III secretion system (T3SS) (Hobolt-Pedersen et al. 2009; Gong et al. 2011; Muschiol et al. 2011). We found no peptides from the DUF582 family members CT620, CT711 and CT712 but from CT619 we found four peptides that uniquely identified the ...
Chapter 05: Synaptic Transmission
Chapter 05: Synaptic Transmission

... • Small molecules synthesized in the terminal button and packaged in synaptic vesicles. E.g. Amino acids and amines are stored in synaptic vesicles • Large molecules assembled in the cell body, packaged in vesicles, and then transported to the axon terminal. E.g. Peptides are stored in and released ...
Protein Tertiary and Quaternary Structure
Protein Tertiary and Quaternary Structure

... 1. Define the function of β-globin and GFP proteins. The β-globin protein is found in red blood cells and is responsible for transporting oxygen from the lungs to the cells, and CO2 from the cells to the lungs. GFP is a protein in jellyfish that makes the jellyfish “glow” green when they are disturb ...
Hormones & Chemical Messengers
Hormones & Chemical Messengers

... • Peptide/protein hormones & how they are made, stored and released ...
The fluid mosaic model describes the plasma membrane structure
The fluid mosaic model describes the plasma membrane structure

... The main fabric of the membrane is composed of amphiphilic or dual-loving, phospholipid molecules. The hydrophilic or water-loving areas of these molecules are in contact with the aqueous fluid both inside and outside the cell. Hydrophobic, or water-hating molecules, tend to be non-polar. A phosphol ...
Sequence and Structural Similarities Between Glyceraldehyde
Sequence and Structural Similarities Between Glyceraldehyde

... roles in chemotaxis(2), and intercellular communication(3) processes. ...
Aligning Sequences…. - School of Biotechnology, Devi Ahilya
Aligning Sequences…. - School of Biotechnology, Devi Ahilya

... G 0 -1 -3 -1 -2 -3 6 H -2 -1 -3 -1 0 -1 -2 8 I -1 -3 -1 -3 -3 0 -4 -3 4 K -1 -1 -3 -1 1 -3 -2 -1 -3 5 L -1 -4 -1 -4 -3 0 -4 -3 2 -2 4 M -1 -3 -1 -3 -2 0 -3 -2 1 -1 2 5 N -2 1 -3 1 0 -3 0 1 -3 0 -3 -2 6 P -1 -1 -3 -1 -1 -4 -2 -2 -3 -1 -3 -2 -2 7 Q -1 0 -3 0 2 -3 -2 0 -3 1 -2 0 0 -1 5 R -1 -2 -3 -2 0 ...
A Highly Immunogenic Carrier Protein - G
A Highly Immunogenic Carrier Protein - G

... consider in the choice of the carrier protein. The first is the size of the carrier protein. Larger proteins (>60kDa) are preferable as it is highly probable that they contain the elements required for T-cell activation and they have multiple and sufficient numbers of exposed residues for peptide co ...
Some funcaon of proteins
Some funcaon of proteins

... •  Highly  reac9ve  func9onal  groups  concentrated  in  a  very  small  space   and  arranged  in  a  way  that  are  in  direct  contact  with  the  bonds  of   the  substrate  they  are  going  to  modify,  thus  ensuring  constant ...
Gene Section RBTN2 (rhombotin-2) Atlas of Genetics and Cytogenetics in Oncology and Haematology
Gene Section RBTN2 (rhombotin-2) Atlas of Genetics and Cytogenetics in Oncology and Haematology

... Lmo2 directly interacts with the basic-loop-helix protein Tal1/Scl and the GATA DNA protein Gata-1; Lmo2 has no direct evidence in DNA binding capacity but could act as a bridging molecule bringing together different DNA binding factors (Tal/Scl, Ldb1, E47, Gata-1) in the erythroid complex; this int ...
Worksheet6-3Proteins
Worksheet6-3Proteins

... How many essential amino acids are there? _____________________ 13. Proteins that contain all of the essential amino acids are called ______________________ proteins. 14. Proteins which are missing one or more of the essential amino acids are called ______________________________________________ pro ...
lesson_model3D_3_short
lesson_model3D_3_short

... in sequence? Which type of modifications are those? Change representation to ball and stick to see the side chains. Do the side chains of the modified residues look like they could ...
CHAPTER 4 Proteins: Structure, Function, Folding
CHAPTER 4 Proteins: Structure, Function, Folding

... Ribonuclease Refolding Experiment • Ribonuclease is a small protein that contains 8 cysteines linked via four disulfide bonds • Urea in the presence of 2-mercaptoethanol fully denatures ribonuclease • When urea and 2-mercaptoethanol are removed, the protein spontaneously refolds, and the correct ...
Lipids and Membranes, Fall 12—Worksheet - KEY
Lipids and Membranes, Fall 12—Worksheet - KEY

... 3) What are two molecular characteristics that account for the rate of membrane passage? In other words, what is it about the molecules that makes them pass through differently? (Answer each in a single complete sentence.) a. Size: Smaller molecules are more likely to pass through a membrane than la ...
supersecondar, tertiary and quaternary structure
supersecondar, tertiary and quaternary structure

... The biological function of some molecules is determined by multiple polypeptide chains – multimeric proteins ...
Slide 1
Slide 1

... less hormone can bind to the cell and higher concentrations of the hormone remain in the blood plasma Up-regulation—Increase in number of cell receptors; more hormone can bind to the cell and lower concentrations of the hormone remain in the blood plasma ...
The Mechanism of Influenza Virus Haemagglutination
The Mechanism of Influenza Virus Haemagglutination

... that the influenza virus possesses a specific enzyme grouping on its surface. It is only comparatively recently, however, that the substrate, which constitutes the red-cell surface receptor, has been identified. Many other macromolecular substances have been found which will bind on to the surface o ...
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G protein–coupled receptor



G protein–coupled receptors (GPCRs), also known as seven-transmembrane domain receptors, 7TM receptors, heptahelical receptors, serpentine receptor, and G protein–linked receptors (GPLR), constitute a large protein family of receptors that sense molecules outside the cell and activate inside signal transduction pathways and, ultimately, cellular responses. Coupling with G proteins, they are called seven-transmembrane receptors because they pass through the cell membrane seven times.G protein–coupled receptors are found only in eukaryotes, including yeast, choanoflagellates, and animals. The ligands that bind and activate these receptors include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters, and vary in size from small molecules to peptides to large proteins. G protein–coupled receptors are involved in many diseases, and are also the target of approximately 40% of all modern medicinal drugs. Two of the United States's top five selling drugs (Hydrocodone and Lisinopril) act by targeting a G protein–coupled receptor. The 2012 Nobel Prize in Chemistry was awarded to Brian Kobilka and Robert Lefkowitz for their work that was ""crucial for understanding how G protein–coupled receptors function."". There have been at least seven other Nobel Prizes awarded for some aspect of G protein–mediated signaling.There are two principal signal transduction pathways involving the G protein–coupled receptors: the cAMP signal pathway and the phosphatidylinositol signal pathway. When a ligand binds to the GPCR it causes a conformational change in the GPCR, which allows it to act as a guanine nucleotide exchange factor (GEF). The GPCR can then activate an associated G protein by exchanging its bound GDP for a GTP. The G protein's α subunit, together with the bound GTP, can then dissociate from the β and γ subunits to further affect intracellular signaling proteins or target functional proteins directly depending on the α subunit type (Gαs, Gαi/o, Gαq/11, Gα12/13).
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