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Student Notes
Student Notes

...  The activity and role of transposable elements and retrotransposons.  How evo-devo relates to our understanding of the evolution of genomes.  The role homeotic genes and homeoboxes How could so many proteins be made with so few genes? Only 1.5% of the human genome codes for proteins or is transc ...
ANALYSE OF THE MOLECULAR EVOLUTION OF THE ZOONOTIC
ANALYSE OF THE MOLECULAR EVOLUTION OF THE ZOONOTIC

... estimate, as the symptoms are at the same time varying and generally benign for patients with operational immune systems. B. henselae infects vessel and red blood cells and can cause cancerlike growth of the vessel cells in immunocompromised patients such as those who are HIV-positive. These bacteri ...
Functional Genomics
Functional Genomics

... to the Study of Eukaryotes ...
Katie-Arabidopsis
Katie-Arabidopsis

... • No immediate agricultural importance and is not thought to cure any disease • Prolific seed production and easy cultivation in restricted space • A large number of mutant lines and genomic resources ...
Lecture #5 PPT - College of Natural Resources
Lecture #5 PPT - College of Natural Resources

... • Describe the disease triangle, and provide a concrete example for significant traits of each of three sides of such triangle • Provide three general examples of the different types of emergent diseases (not specific emergent diseases but how they can be categorized ...
The Human Genome Project CH 13 Sec 3 notes
The Human Genome Project CH 13 Sec 3 notes

... •Variation that occurs in a genome sequence when a single nucleotide is altered are called _______________________________________________ –Must occur in at 1% of population •SNP maps may help identify genes of genetic disorders The HapMap Project ...
Data visualization in the post
Data visualization in the post

... – generating proteins with subtle or opposing functional roles – enabling an organism to respond to environmental pressures ...
Protocol S1
Protocol S1

... Secondly, they were categorized based on Interpro, GO, and COG (Clusters of Orthologous Genes). Finally, functional pathways were annotated based on KEGG[7], tRNA genes and repeats were predicted with tRNAscan-SE[8] and Repeatmasker (http://repeatmasker.genome.washington.edu/cgi-bin/RMZ.pl). The sof ...
Lecture 5 File
Lecture 5 File

... long distance effective dispersal occurs, resistance will be slower to show up in hosts, and virulence will increase more slowly in pathogens • Red queen hypothesis: relationship between hosts and pathogens is always dynamic: pathogen increases virulence, plants will be selected for increased resist ...
Study of the evolution of animal parasite bacteria and plant symbionts
Study of the evolution of animal parasite bacteria and plant symbionts

... plants symbionts that enter plant roots and live inside it in a cooperative manner, each partner drawing benefit from such an association. We know for sure that they descend from a common ancestor, but this ancestor is now extinct. It is of great interest to study how these bacteria evolved so diffe ...
Horizontal Resistance to Plant Diseases
Horizontal Resistance to Plant Diseases

... • Horizontal resistance (HR) is not complete • The pathogen is able to survive – thereby it is possible to have a stable ecological balance between the pest and crop • By allowing a number of races to survive, some more virulent, some less virulent, then when they intermate/genetic change there will ...
Powerpoint file - Centre for Microbial Diseases and Immunity
Powerpoint file - Centre for Microbial Diseases and Immunity

... pathogen genes involved in such processes will be more similar to host genes than would be expected (based on phylogeny or motifs). We are attempting to identify such genes by applying specific bioinformatic and evolutionary analysis tools to sequenced genome datasets, and further examining such gen ...
Ch. 19 Genomics
Ch. 19 Genomics

... Transcriptome ...
Microarray Analysis
Microarray Analysis

... Transcriptome ...
Term: SPRING 2000 - Washington University in St. Louis
Term: SPRING 2000 - Washington University in St. Louis

... The newly emergent disciplines of genomics and bioinformatics deal with studying the structure of the genome, including the identification and analysis of gene structure. In addition, genomic sequence information can be used to explore phylogenetic relationships between organisms. The focus of the t ...
Genetic Organization and Control
Genetic Organization and Control

... 2. What did she discover about crossing over frequency between the genes of corn? (Hint…closer genes and further apart genes) ...
Title: GeneWiz browser: An Interactive Tool for Visualizing
Title: GeneWiz browser: An Interactive Tool for Visualizing

... pathogencity to human and animals o new targeted genes worthy for industrial and economical use. ...
Genetics and genomics in wildlife studies: Implications for
Genetics and genomics in wildlife studies: Implications for

... and upcoming needs of conservation genomics. A range of important needs were identified including: cost-effective genotyping methods at a population level, sequencing methods for low quantity or poor quality DNA, and the assembly of duplicated genomes (e.g. amphibian, fish, and plant species). Data ...
Tigger/pogo transposons in the Fugu genome
Tigger/pogo transposons in the Fugu genome

... Another theme will be genome size, which involves a variety of effects. But we can think of two levels of analysis. First, there is the mechanistic question of why genomes get bigger or smaller. For example, they generally get bigger by accumulating many copies of pseudogenes or transposable elemen ...
NOVA – Cracking the Code of Life
NOVA – Cracking the Code of Life

... 2. To what degree are all humans identical at the genetic level? 3. About what percentage of the genes in a banana are also in a human? ____ Why is this figure so high? ...
Finding needles in a haystack - predicting gene regulatory pathways
Finding needles in a haystack - predicting gene regulatory pathways

... methodology. Based on our analysis, we have developed a web-based tool called PROSPECT, which allows consensus pattern-based searching of gene clusters obtained from microarray data. For millions of years, L1 retrotransposons have been duplicating in mammalian genomes by an efficient “copy and paste ...
Dr.Carlos Goller
Dr.Carlos Goller

... Some  of  the  most  obscure  environments  are  bustling  with  microbial  life  and  genetic  diversity.  The  genetic  potential  of  these  complex  microbial  populations  remains  to  be  elucidated  and  tamed.  New  technologies  allow  us  to  dig  deeper  into the genes these organisms har ...
Chapter 9: Gene Transfer, Genetic Engineering, and Genomics
Chapter 9: Gene Transfer, Genetic Engineering, and Genomics

... Assess the importance of mutation and genetic recombination to bacterial diversity. Contrast vertical gene transfer and horizontal (lateral) gene transfer in prokaryotes. Describe the experiments of Griffith that led to the discovery of transformation. Prepare a list of the sequential events of tran ...
9.5 Genomics and Bioinformatics
9.5 Genomics and Bioinformatics

... • Genomics is the study of genomes. – can include the sequencing of the genome – comparisons of genomes within and across species ...
9.5 Genomics and Bioinformatics KEY CONCEPT Entire genomes are sequenced, studied, and compared.
9.5 Genomics and Bioinformatics KEY CONCEPT Entire genomes are sequenced, studied, and compared.

... and entire genomes. • Genomics is the study of genomes. – can include the sequencing of the genome – comparisons of genomes within and across species ...
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Pathogenomics

Pathogen infections are among the leading causes of infirmity and mortality among humans and other animals in the world. Until recently, it has been difficult to compile information to understand the generation of pathogen virulence factors as well as pathogen behaviour in a host environment. The study of Pathogenomics attempts to utilize genomic and metagenomics data gathered from high through-put technologies (e.g. sequencing or DNA microarrays), to understand microbe diversity and interaction as well as host-microbe interactions involved in disease states. The bulk of pathogenomics research concerns itself with pathogens that affect human health; however, studies also exist for plant and animal infecting microbes.
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