of the Rat MHC Genes of the Telomeric Class I Gene Region
... basis of sequences obtained from the PAC clones. Clones were ordered according to restriction fragment overlap, hybridization patterns with various probes, and sequence data. Sequencing of PAC clone ends was performed as previously described (13) and analyzed with an ABI310 ...
... basis of sequences obtained from the PAC clones. Clones were ordered according to restriction fragment overlap, hybridization patterns with various probes, and sequence data. Sequencing of PAC clone ends was performed as previously described (13) and analyzed with an ABI310 ...
a19 EvoMicroLife
... • The best defenses against bacterial disease are: sanitation, antibiotics, and education. • Using antibacterial products everywhere in the home is not the answer! ...
... • The best defenses against bacterial disease are: sanitation, antibiotics, and education. • Using antibacterial products everywhere in the home is not the answer! ...
A program for annotating and predicting the effects of single
... polymorphisms based on their effects on annotated genes, such as synonymous or non-synonymous SNPs, start codon gains or losses, stop codon gains or losses; or based on their genomic locations, such as intronic, 5' untranslated region (5' UTR), 3' UTR, upstream, downstream or intergenic regions. Her ...
... polymorphisms based on their effects on annotated genes, such as synonymous or non-synonymous SNPs, start codon gains or losses, stop codon gains or losses; or based on their genomic locations, such as intronic, 5' untranslated region (5' UTR), 3' UTR, upstream, downstream or intergenic regions. Her ...
Hd6, a rice quantitative trait locus involved in photoperiod
... series of genes and show continuous variation in progeny. Many efforts have been made to map such genes, known as quantitative trait loci (QTLs), because of their biological and agronomic importance. The development of a high-density linkage map based on DNA markers made it possible to map QTLs with ...
... series of genes and show continuous variation in progeny. Many efforts have been made to map such genes, known as quantitative trait loci (QTLs), because of their biological and agronomic importance. The development of a high-density linkage map based on DNA markers made it possible to map QTLs with ...
Altering gene expression by aminocoumarins: the role of DNA
... twofold repressed in novobiocin treated bacteria) via light grey (unchanged) to dark orange (at least twofold induced in novobiocin treated cells). Strain HG001 was grown to exponential phase (OD600 = 0.6) and treated with and without novobiocin (0.5 mg/L) for one hour. ...
... twofold repressed in novobiocin treated bacteria) via light grey (unchanged) to dark orange (at least twofold induced in novobiocin treated cells). Strain HG001 was grown to exponential phase (OD600 = 0.6) and treated with and without novobiocin (0.5 mg/L) for one hour. ...
PDF version - GeneNetwork
... are controlled by variants in or near their parent gene produce so-called cis-acting expression QTLs (cis eQTLs) whereas those that are controlled by a more distant locus, usually on a different chromosome, produce trans-acting QTLs (trans eQTLs) (Fig. 3). Test whether you can find a set of proteins ...
... are controlled by variants in or near their parent gene produce so-called cis-acting expression QTLs (cis eQTLs) whereas those that are controlled by a more distant locus, usually on a different chromosome, produce trans-acting QTLs (trans eQTLs) (Fig. 3). Test whether you can find a set of proteins ...
1 Title: Evidence for large domains of similarly expressed genes in
... The distribution of groups along the chromosomes appears random and there is little bias for genes in a group to be on the same strand. The length of genomic sequence occupied by similarly expressed gene groups is highly variable. The average group size is nearly 125 kbp in length with a standard de ...
... The distribution of groups along the chromosomes appears random and there is little bias for genes in a group to be on the same strand. The length of genomic sequence occupied by similarly expressed gene groups is highly variable. The average group size is nearly 125 kbp in length with a standard de ...
LESSON 4 Understanding Genetic Tests to Detect BRCA1
... molecules, or to compare a single sequence to a collection of sequences in a database. Additional information about BLAST can be found in the Appendix. 20. Specifically, students will be performing a Nucleotide BLAST, comparing Lawler family BRCA1 DNA sequences to a DNA reference sequence from the N ...
... molecules, or to compare a single sequence to a collection of sequences in a database. Additional information about BLAST can be found in the Appendix. 20. Specifically, students will be performing a Nucleotide BLAST, comparing Lawler family BRCA1 DNA sequences to a DNA reference sequence from the N ...
Supplementary Information (doc 42K)
... PCR/assay conditions are available upon request. Genotype data were analyzed using Sequenom Spectrodesigner Software package. Inter- and intraplate duplicates were included to check for genotype consistencies across DNA plates. Allele peaks were analyzed using Sequenom Typer Analysis software and ge ...
... PCR/assay conditions are available upon request. Genotype data were analyzed using Sequenom Spectrodesigner Software package. Inter- and intraplate duplicates were included to check for genotype consistencies across DNA plates. Allele peaks were analyzed using Sequenom Typer Analysis software and ge ...
Yang (2002) - molecularevolution.org
... example is presented later in this section.) This approach may suffer from several problems. First, reconstructed ancestral sequences are not real data and involve systematic biases and random errors [19]. Second, the methods used to estimate substitution rates along each branch are typically simpli ...
... example is presented later in this section.) This approach may suffer from several problems. First, reconstructed ancestral sequences are not real data and involve systematic biases and random errors [19]. Second, the methods used to estimate substitution rates along each branch are typically simpli ...
Isolation and Identification of Antibiotic Resistant Bacteria from the
... advantaged over bacteria without antibiotic resistance, allowing them to become more numerous than non-resistant strains. It is these bacteria that will pass into the environment to potentially spread antibiotic resistance. In bacteria, the genes coding for antibiotic resistance are often stored in ...
... advantaged over bacteria without antibiotic resistance, allowing them to become more numerous than non-resistant strains. It is these bacteria that will pass into the environment to potentially spread antibiotic resistance. In bacteria, the genes coding for antibiotic resistance are often stored in ...
National University of Life and Environmental Sciences of Ukraine
... organisms. The energy liberated during the breakdown of glucose is “trapped” and made available for the work to be performed by the cells, such as bacteria, yeasts, protozoa, or muscle cells. Some microorganisms, the bacteria in particular, are able to utilize a great variety of chemical substances ...
... organisms. The energy liberated during the breakdown of glucose is “trapped” and made available for the work to be performed by the cells, such as bacteria, yeasts, protozoa, or muscle cells. Some microorganisms, the bacteria in particular, are able to utilize a great variety of chemical substances ...
Full-Text PDF
... ε-ionone rings in the crucial bifurcation step of carotenoid biosynthesis. Among all carotenoid constituents, β-carotene (β,β-carotene) is found in all photosynthetic organisms, except for purple bacteria and heliobacteria, suggesting a ubiquitous distribution of lycopene β-cyclase activity in these ...
... ε-ionone rings in the crucial bifurcation step of carotenoid biosynthesis. Among all carotenoid constituents, β-carotene (β,β-carotene) is found in all photosynthetic organisms, except for purple bacteria and heliobacteria, suggesting a ubiquitous distribution of lycopene β-cyclase activity in these ...
PDF
... Background: Several studies have investigated the relationships between selective constraints in introns and their length, GC content and location within genes. To date, however, no such investigation has been done in plants. Studies of selective constraints in noncoding DNA have generally involved ...
... Background: Several studies have investigated the relationships between selective constraints in introns and their length, GC content and location within genes. To date, however, no such investigation has been done in plants. Studies of selective constraints in noncoding DNA have generally involved ...
Chapter 27 Phage Strategies
... comprise, regulators required for expression of the middle (or delayed early) set of phage genes. • The middle group of genes includes regulators to transcribe the late genes. • This results in the ordered expression of groups of genes during phage infection. ...
... comprise, regulators required for expression of the middle (or delayed early) set of phage genes. • The middle group of genes includes regulators to transcribe the late genes. • This results in the ordered expression of groups of genes during phage infection. ...
Chromosomal Clustering of Periodically Expressed Genes
... one missing value at time point j, the approach first finds 10 other oligonucleotides that have a value measured at time point j, with expression most similar to x at all other 45 time points. Then the weighted average of expression values for time point j from these 10 similar oligonucleotides is u ...
... one missing value at time point j, the approach first finds 10 other oligonucleotides that have a value measured at time point j, with expression most similar to x at all other 45 time points. Then the weighted average of expression values for time point j from these 10 similar oligonucleotides is u ...
No Slide Title
... – Uninfected female x infected male – Infected female x male infected by at least one different strain ...
... – Uninfected female x infected male – Infected female x male infected by at least one different strain ...
Distortion of quantitative genomic and expression
... regarding reproducibility of these techniques have been raised by cross-validation studies in different laboratories (1–5). Strategies to mitigate variability in the results obtained from replicate studies have focused on standardizing technical factors, such as array production, RNA synthesis, labe ...
... regarding reproducibility of these techniques have been raised by cross-validation studies in different laboratories (1–5). Strategies to mitigate variability in the results obtained from replicate studies have focused on standardizing technical factors, such as array production, RNA synthesis, labe ...
PDF of article
... In addition, the genomic distribution of 5-hmC is altered under several disease conditions, such as cancer, Huntington’s disease and Alzheimer’s disease (Bhattacharyya et al., 2013; Bradley-Whitman & Lovell, 2013; Ficz et al., 2011; Jin et al., 2011; Pastor et al., 2011; Stroud et al., 2011; Wang et ...
... In addition, the genomic distribution of 5-hmC is altered under several disease conditions, such as cancer, Huntington’s disease and Alzheimer’s disease (Bhattacharyya et al., 2013; Bradley-Whitman & Lovell, 2013; Ficz et al., 2011; Jin et al., 2011; Pastor et al., 2011; Stroud et al., 2011; Wang et ...
Why do more divergent sequences produce smaller non
... lower than the corresponding synonymous distance (dS , measured by the number of synonymous substitutions per synonymous site), because the structure and function of a protein imposes constraints on the types of nonsynonymous (amino acid) substitutions that can take place, while synonymous substitut ...
... lower than the corresponding synonymous distance (dS , measured by the number of synonymous substitutions per synonymous site), because the structure and function of a protein imposes constraints on the types of nonsynonymous (amino acid) substitutions that can take place, while synonymous substitut ...
PCR detection of the two `Candidatus` liberobacter species
... We have shown previously that primers OI2c and OI1 were specific for greening liberobacter 16S rDNA amplification as all liberobacters strains could be amplified and no amplification was obtained with E. coli, Xylella fastidiosa and the phytoplasmas of witche’s broom disease of lime and of tomato st ...
... We have shown previously that primers OI2c and OI1 were specific for greening liberobacter 16S rDNA amplification as all liberobacters strains could be amplified and no amplification was obtained with E. coli, Xylella fastidiosa and the phytoplasmas of witche’s broom disease of lime and of tomato st ...
Sequencing, sub-cloning, expression and purification of
... at the site, but these were not novel species. S. paucimobilis EPA505 was discovered at a creosote contaminated site in Pensacola, Florida [36,37]. It also was found to be capable of growth on a wide range of aromatic substrates as its sole carbon and energy source[47]. Other strains of S. paucimobi ...
... at the site, but these were not novel species. S. paucimobilis EPA505 was discovered at a creosote contaminated site in Pensacola, Florida [36,37]. It also was found to be capable of growth on a wide range of aromatic substrates as its sole carbon and energy source[47]. Other strains of S. paucimobi ...
Differential Gene Expression in the Gastrula of Xenopus Laevis
... Gastrula mRNA separate from Maternal mRNA Gradually disappear after Gastrula; Implication that it has little preceding stages. Some increase in concentration. ...
... Gastrula mRNA separate from Maternal mRNA Gradually disappear after Gastrula; Implication that it has little preceding stages. Some increase in concentration. ...
the role of earthworm gut-associated microorganisms
... The group of prion diseases also known as transmissible spongiform encephalopathy (TSE) includes the most well-known human prion diseases (kuru, Creutzfeldt-Jakob disease (CJD), and its variants (familial, sporadic, latrogenic, fatal familial insomnia and the new variant of CJD (vCJD) (Will et al. ( ...
... The group of prion diseases also known as transmissible spongiform encephalopathy (TSE) includes the most well-known human prion diseases (kuru, Creutzfeldt-Jakob disease (CJD), and its variants (familial, sporadic, latrogenic, fatal familial insomnia and the new variant of CJD (vCJD) (Will et al. ( ...
Taxonomic evaluation of the Streptomyces griseus clade using
... integrated in a larger MLSA phylogeny. The results demonstrated that MLSA of five housekeeping genes (atpD, gyrB, recA, rpoB and trpB) is better than the previous six-gene scheme, as it provides equally good resolution and stability and is more cost-effective; MLSA using three or four of the genes a ...
... integrated in a larger MLSA phylogeny. The results demonstrated that MLSA of five housekeeping genes (atpD, gyrB, recA, rpoB and trpB) is better than the previous six-gene scheme, as it provides equally good resolution and stability and is more cost-effective; MLSA using three or four of the genes a ...
Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental samples. The broad field may also be referred to as environmental genomics, ecogenomics or community genomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Recent studies use either ""shotgun"" or PCR directed sequencing to get largely unbiased samples of all genes from all the members of the sampled communities. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before.