From molecular to genomic epidemiology
... bacterial and fungal pathogens and is a primary typing method for clonal delineation in pathogens such as Neisseria [12] or Campylobacter [4]. The advantages of MLST are twofold: firstly, it generates reproducible and standardised data that are highly portable (i.e. easily transferrable between diff ...
... bacterial and fungal pathogens and is a primary typing method for clonal delineation in pathogens such as Neisseria [12] or Campylobacter [4]. The advantages of MLST are twofold: firstly, it generates reproducible and standardised data that are highly portable (i.e. easily transferrable between diff ...
Practical Issues in Microarray Data Analysis
... To identify combinations of features that usefully characterize samples or genes Not really suitable for quantitative measures of ...
... To identify combinations of features that usefully characterize samples or genes Not really suitable for quantitative measures of ...
RNA
... 3) If one nucleotide corresponded to one amino acid, only 4 words could be formed (only 4 bases in RNA). 4) If two bases specified an AA, that would only allow 16 (4x4) words. Not enough. 5) But three bases per AA would work (4x4x4=64, more than enough to produce the minimum of 20 words needed). 6) ...
... 3) If one nucleotide corresponded to one amino acid, only 4 words could be formed (only 4 bases in RNA). 4) If two bases specified an AA, that would only allow 16 (4x4) words. Not enough. 5) But three bases per AA would work (4x4x4=64, more than enough to produce the minimum of 20 words needed). 6) ...
Giant viruses!
... agents invisible to the light microscope and capable of passing through "sterilizing" filters. In addition to their extremely small size, most viruses studied over the years also exhibited minimal genomes and gene contents, almost entirely relying on cell-encoded functions to multiply, as expected f ...
... agents invisible to the light microscope and capable of passing through "sterilizing" filters. In addition to their extremely small size, most viruses studied over the years also exhibited minimal genomes and gene contents, almost entirely relying on cell-encoded functions to multiply, as expected f ...
Classification of Bears
... unrooted. In rooted trees, there is a particular node, called the root--representing a common ancestor--from which a unique path leads to any other node. An unrooted tree only specifies the relationship among species, without identifying a common ancestor, or evolutionary path. Molecular phylogeneti ...
... unrooted. In rooted trees, there is a particular node, called the root--representing a common ancestor--from which a unique path leads to any other node. An unrooted tree only specifies the relationship among species, without identifying a common ancestor, or evolutionary path. Molecular phylogeneti ...
Space Food Safety Lab Classroom Slides
... What’s the importance of running controls? What was the most surprising thing you learned? ...
... What’s the importance of running controls? What was the most surprising thing you learned? ...
virilis_annot
... mRNA, translate it and make sure the protein we get out is similar to expected: 1. Enter coordinates for each exon in browser 2. Click “DNA” button at top then “get DNA” 3. Copy the sequence into a text file 4. Repeat for each exon, adding DNA to file 5. Go to http://us.expasy.org/tools/dna.html 6. ...
... mRNA, translate it and make sure the protein we get out is similar to expected: 1. Enter coordinates for each exon in browser 2. Click “DNA” button at top then “get DNA” 3. Copy the sequence into a text file 4. Repeat for each exon, adding DNA to file 5. Go to http://us.expasy.org/tools/dna.html 6. ...
- SlideBoom
... techniques-production of organisms with more desirable charachteristics –via mutations and recombinations of existing genes between genotypes; neer relationships industrial use of living organisms to produce foods,drugs or other products small assortiment of genes Genetic engeneering – technic e ...
... techniques-production of organisms with more desirable charachteristics –via mutations and recombinations of existing genes between genotypes; neer relationships industrial use of living organisms to produce foods,drugs or other products small assortiment of genes Genetic engeneering – technic e ...
census mic case study
... MIC prevention requires detection and quantification of the microorganisms responsible so that appropriate corrective measures can be taken. Currently, assessment of MIC potential is primarily based upon culture-dependent methods like plate counts, MPNs, or Biological Activity Response Tests. Howeve ...
... MIC prevention requires detection and quantification of the microorganisms responsible so that appropriate corrective measures can be taken. Currently, assessment of MIC potential is primarily based upon culture-dependent methods like plate counts, MPNs, or Biological Activity Response Tests. Howeve ...
Genome Databases and Open Access Resources
... genomes, their evolution and the evolution of their genes. • Intra-genomic comparisons help understanding the degree of duplication (genome regions; genes) and genes organization,... • Inter-genomic comparisons help understanding the degree of similarity between genomes; degree of conservation betwe ...
... genomes, their evolution and the evolution of their genes. • Intra-genomic comparisons help understanding the degree of duplication (genome regions; genes) and genes organization,... • Inter-genomic comparisons help understanding the degree of similarity between genomes; degree of conservation betwe ...
Forensic DNA Testing Terminology ABI 310 Genetic Analyzer – a
... Forensic DNA Testing Terminology ABI 310 Genetic Analyzer – a capillary electrophoresis instrument used by forensic DNA laboratories to separate short tandem repeat (STR) loci on the basis of their size. Adenine – a purine base; one of the four molecules containing nitrogen present in the nucleic ac ...
... Forensic DNA Testing Terminology ABI 310 Genetic Analyzer – a capillary electrophoresis instrument used by forensic DNA laboratories to separate short tandem repeat (STR) loci on the basis of their size. Adenine – a purine base; one of the four molecules containing nitrogen present in the nucleic ac ...
An Introduction to Genetic Analysis Chapter 14 Genomics Chapter
... nature of whole genomes; and functional genomics, characterizing the transcriptome (the entire range of transcripts produced by a given organism) and the proteome (the entire array of encoded proteins). The prime directive of structural genomic analysis is the complete and accurate elucidation of th ...
... nature of whole genomes; and functional genomics, characterizing the transcriptome (the entire range of transcripts produced by a given organism) and the proteome (the entire array of encoded proteins). The prime directive of structural genomic analysis is the complete and accurate elucidation of th ...
DNA sequencing (including PCR clean-up)
... We get all of our DNA sequencing done at Arizona State University in Tucson. Getting plates ready takes some time and advanced planning, so start thinking about it several days ahead of time. In particular, plates must be sent by 3pm each Thursday at the latest in order to ensure they make it there ...
... We get all of our DNA sequencing done at Arizona State University in Tucson. Getting plates ready takes some time and advanced planning, so start thinking about it several days ahead of time. In particular, plates must be sent by 3pm each Thursday at the latest in order to ensure they make it there ...
Slides, one per page - Bioinformatics and Research Computing
... CCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTTAGG ...
... CCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTTAGG ...
Name __________________________________ Period _________ Ms Foglia • AP Biology Date ______________________
... Name __________________________________ Ms Foglia • AP Biology ...
... Name __________________________________ Ms Foglia • AP Biology ...
DNA Paternity Test RFLP analysis (Restriction Fragment Length
... sequences -each enzyme recognizes and cuts DNA at a different base sequence e.g. BamHI XXXXXXXXGGATCCXXXXXXXXXX XXXXXXXXCCTAGGXXXXXXXXXX -due to spontaneous mutations over time, different people have slightly different base sequences in their DNA -if mutation creates or deletes a restriction site in ...
... sequences -each enzyme recognizes and cuts DNA at a different base sequence e.g. BamHI XXXXXXXXGGATCCXXXXXXXXXX XXXXXXXXCCTAGGXXXXXXXXXX -due to spontaneous mutations over time, different people have slightly different base sequences in their DNA -if mutation creates or deletes a restriction site in ...
Exercises
... The sequence (at the top of the page) should look like this: KTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDST 50 PPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGN 100 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRP 150 ...
... The sequence (at the top of the page) should look like this: KTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDST 50 PPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGN 100 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRP 150 ...
In the Human Genome
... The Human Genome Project Begun in 1990, the U.S. Human Genome Project is a 13-year effort coordinated by the U.S. Department of Energy and the National Institutes of Health. The project originally was planned to last 15 years, but effective resource and technological advances have accelerated the e ...
... The Human Genome Project Begun in 1990, the U.S. Human Genome Project is a 13-year effort coordinated by the U.S. Department of Energy and the National Institutes of Health. The project originally was planned to last 15 years, but effective resource and technological advances have accelerated the e ...
Multiple Sclerosis Basic Facts Series
... of us our unique characteristics. Except for identical twins, no two people have exactly the same sequence of DNA bases in their genes. Differences in the DNA sequence are so unique to an individual that DNA analysis can be used for identification. Sometimes, however, a difference in a single gene ...
... of us our unique characteristics. Except for identical twins, no two people have exactly the same sequence of DNA bases in their genes. Differences in the DNA sequence are so unique to an individual that DNA analysis can be used for identification. Sometimes, however, a difference in a single gene ...
Noncoding DNA - University of Mysore
... in the “central dogma” has resulted in a common belief that any sequence of DNA or a gene is of relevance only if it has a protein-coding function and consequently, a significant proportion of molecular biological studies during the past few decades have been propelled by the concept that the noncod ...
... in the “central dogma” has resulted in a common belief that any sequence of DNA or a gene is of relevance only if it has a protein-coding function and consequently, a significant proportion of molecular biological studies during the past few decades have been propelled by the concept that the noncod ...
Chapter 1 - Bellarmine University
... differences between Pasteur’s results and those of other investigators • Pasteur used broths made with sugar or yeast extract • Highlights importance of reproducing all conditions as closely as possible when conducting research ...
... differences between Pasteur’s results and those of other investigators • Pasteur used broths made with sugar or yeast extract • Highlights importance of reproducing all conditions as closely as possible when conducting research ...
Biotechnology - The Bio Edge
... Gel _______________ is a process that separates DNA or protein fragments according to their size, by causing them to migrate within a gel in response to an electric field. ...
... Gel _______________ is a process that separates DNA or protein fragments according to their size, by causing them to migrate within a gel in response to an electric field. ...
Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental samples. The broad field may also be referred to as environmental genomics, ecogenomics or community genomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Recent studies use either ""shotgun"" or PCR directed sequencing to get largely unbiased samples of all genes from all the members of the sampled communities. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before.