Organization and dynamics of plant interphase chromosomes
... [52] was no more frequent than in the wild-type background [50]. An Arabidopsis mutant of the p150 subunit of the chromatin assembly factor CAF1 ( fas1-4) showed up to a 100-fold increase of (intrachromosomal) somatic homologous recombination, but did not display a significantly altered sister chrom ...
... [52] was no more frequent than in the wild-type background [50]. An Arabidopsis mutant of the p150 subunit of the chromatin assembly factor CAF1 ( fas1-4) showed up to a 100-fold increase of (intrachromosomal) somatic homologous recombination, but did not display a significantly altered sister chrom ...
Reconstruction of a 450-My-old ancestral vertebrate protokaryotype
... considered to be orthologous to the respective human gene if reciprocal BLAST best-hit searches identified them as such in the Ensembl database (Table S1 in supplementary online material). Another 801 genes were added from a third fish species, medaka (Oryzias latipes, OLA) [9]. Table 1 shows the nu ...
... considered to be orthologous to the respective human gene if reciprocal BLAST best-hit searches identified them as such in the Ensembl database (Table S1 in supplementary online material). Another 801 genes were added from a third fish species, medaka (Oryzias latipes, OLA) [9]. Table 1 shows the nu ...
Basic Concepts of Bioinformatics
... Dynamic programming is a way of using heuristics to search in the most promising path M.Alroy Mascrenghe ...
... Dynamic programming is a way of using heuristics to search in the most promising path M.Alroy Mascrenghe ...
PERL - unimore.it
... Similar to normal arrays but the elements are identified by keys and not indices. The keys can be more complicated, such as strings of characters. Hashes are indicated by % and can be initialized with lists like arrays: ...
... Similar to normal arrays but the elements are identified by keys and not indices. The keys can be more complicated, such as strings of characters. Hashes are indicated by % and can be initialized with lists like arrays: ...
Variables
... Similar to normal arrays but the elements are identified by keys and not indices. The keys can be more complicated, such as strings of characters. Hashes are indicated by % and can be initialized with lists like arrays: ...
... Similar to normal arrays but the elements are identified by keys and not indices. The keys can be more complicated, such as strings of characters. Hashes are indicated by % and can be initialized with lists like arrays: ...
The landscape of microbial phenotypic traits and associated genes
... (39). We further complemented inferences from text mining using genomic data, by predicting traits from: (i) the proteome composition, encoded as relative frequencies of amino acids (40,41); (ii) the gene repertoire, encoded as presence/absence indicators of COG gene families in a genome (42,43); (i ...
... (39). We further complemented inferences from text mining using genomic data, by predicting traits from: (i) the proteome composition, encoded as relative frequencies of amino acids (40,41); (ii) the gene repertoire, encoded as presence/absence indicators of COG gene families in a genome (42,43); (i ...
Special Feature —Manipulating Genes to Understand
... science. Transgenic animals are defined as animals in which a segment of DNA has been physically integrated into the genome of all cells, including the germ line, so that it can be transmitted to offspring as a simple Mendelian trait The DNA segment generally consists of a whole cloned gene, cDNA, o ...
... science. Transgenic animals are defined as animals in which a segment of DNA has been physically integrated into the genome of all cells, including the germ line, so that it can be transmitted to offspring as a simple Mendelian trait The DNA segment generally consists of a whole cloned gene, cDNA, o ...
Screening of RYR1 genotypes in swine population by a rapid and
... In the recent years, several genetic tests were described to identify mutations and type single-nucleotide polymorphisms (SNPs) including the RYR1. The majority of these techniques require processing, separation steps or allele-specific primers or probes, which make them less favourable for high-thr ...
... In the recent years, several genetic tests were described to identify mutations and type single-nucleotide polymorphisms (SNPs) including the RYR1. The majority of these techniques require processing, separation steps or allele-specific primers or probes, which make them less favourable for high-thr ...
Proof corrections should be returned in one communication to Justin
... DNA translocase A motor protein whose ATPase cycle is coupled to movement on DNA. Heteroduplex DNA The duplex DNA product of DNAstrand exchange, where the two component single strands were originally part of two separate DNA molecules. Paralog A type of homolog where genes are related by duplication ...
... DNA translocase A motor protein whose ATPase cycle is coupled to movement on DNA. Heteroduplex DNA The duplex DNA product of DNAstrand exchange, where the two component single strands were originally part of two separate DNA molecules. Paralog A type of homolog where genes are related by duplication ...
Sample pages 2 PDF
... bacteria that are involved in the DNA uptake process belong to a family of proteins also involved in other processes such as type IV pilus formation, type II and III secretion, and twitching motility (the pilus/secretion/twitching/ competence or PSTC family). In the well-studied transformation syste ...
... bacteria that are involved in the DNA uptake process belong to a family of proteins also involved in other processes such as type IV pilus formation, type II and III secretion, and twitching motility (the pilus/secretion/twitching/ competence or PSTC family). In the well-studied transformation syste ...
Sequence editing and analysis PDF
... 1. Open INTERNET EXPLORER or, if you do not have it, SAFARI. Open http://align.genome.jp This is an extremely fast web server for alignment (and other) applications. There are other www servers dedicated to sequence alignment and if this one is down you can search for others using Google (e.g., Inst ...
... 1. Open INTERNET EXPLORER or, if you do not have it, SAFARI. Open http://align.genome.jp This is an extremely fast web server for alignment (and other) applications. There are other www servers dedicated to sequence alignment and if this one is down you can search for others using Google (e.g., Inst ...
Genetics Heredity and Variation: *Heredity is the branch of science
... and RNA Translation are not physically separated, the RNA Transcript can directly ...
... and RNA Translation are not physically separated, the RNA Transcript can directly ...
Construction of PANM Database (Protostome DB) for rapid
... A stand-alone BLAST server is available that provides a convenient and amenable platform for the analysis of molluscan sequence information especially the EST sequences generated by traditional sequencing methods. However, it is found that the server has limitations in the annotation of molluscan se ...
... A stand-alone BLAST server is available that provides a convenient and amenable platform for the analysis of molluscan sequence information especially the EST sequences generated by traditional sequencing methods. However, it is found that the server has limitations in the annotation of molluscan se ...
Yeast as a Model Genetic Organism
... identifying genes by mutagenesis, having a short generation time and a small genome. Mutations in DNA can result in a loss or gain of gene function. The phenotype conferred by a genetic mutation points to the function of that gene in the cell. Unlike higher eukaryotes, heterothallic yeast strains (t ...
... identifying genes by mutagenesis, having a short generation time and a small genome. Mutations in DNA can result in a loss or gain of gene function. The phenotype conferred by a genetic mutation points to the function of that gene in the cell. Unlike higher eukaryotes, heterothallic yeast strains (t ...
The Mammalian Mismatch Repair Pathway Removes DNA 8
... 8-oxoG were closely similar in the hMLH1 transfectants and parental A2780 cells (Figure 2B). Base Excision Repair of 8-oxoG In the second approach, we examined whether Msh2 could act as a modifier of the Ogg1 DNA glycosylase that removes 8-oxoG from resting DNA. Ogg1 activity in cell extracts was as ...
... 8-oxoG were closely similar in the hMLH1 transfectants and parental A2780 cells (Figure 2B). Base Excision Repair of 8-oxoG In the second approach, we examined whether Msh2 could act as a modifier of the Ogg1 DNA glycosylase that removes 8-oxoG from resting DNA. Ogg1 activity in cell extracts was as ...
Genetic Portrait of a Yeast
... Mutations can be isolated in diploids, then analyzed in haploids Conditional mutants can be isolated Recombination frequencies are high, facilitating molecular manipulations Genome size is small and number of genes low, so analysis and manipulations of the whole genome are possible Copyright © The M ...
... Mutations can be isolated in diploids, then analyzed in haploids Conditional mutants can be isolated Recombination frequencies are high, facilitating molecular manipulations Genome size is small and number of genes low, so analysis and manipulations of the whole genome are possible Copyright © The M ...
Bioinformatics Database Worksheet
... search, in the colors that signify their BLAST scores, are located for you on the diagram. Notice that there are about 100 proteins (discovered so far, that is) that have 40% or more positives in alignment with red opsin. The opsins are members of the very large family of G protein-coupled receptors ...
... search, in the colors that signify their BLAST scores, are located for you on the diagram. Notice that there are about 100 proteins (discovered so far, that is) that have 40% or more positives in alignment with red opsin. The opsins are members of the very large family of G protein-coupled receptors ...
Voiumon Numberi7i983 NucleicAcids Research
... Figure 2 displays the nucleotide sequence for 2,709 bp spanning the entire tet region of RP1 and table 1 lists the recognition sites within this region for various class II restriction endonucleases. It should be noted that the sequence derived here is contiguous with that previously determined for ...
... Figure 2 displays the nucleotide sequence for 2,709 bp spanning the entire tet region of RP1 and table 1 lists the recognition sites within this region for various class II restriction endonucleases. It should be noted that the sequence derived here is contiguous with that previously determined for ...
Supplementary Methods Tables
... Illumina Sequence Control Software (SCS) control the reagent delivery and collect raw images. Real Time Analysis (RTA) software was used to process the image analysis and base calling. On average, about 80-100 million successful reads, consisting of 2 X100 bp, were generated on each lane of a flow c ...
... Illumina Sequence Control Software (SCS) control the reagent delivery and collect raw images. Real Time Analysis (RTA) software was used to process the image analysis and base calling. On average, about 80-100 million successful reads, consisting of 2 X100 bp, were generated on each lane of a flow c ...
Adaptive value of sex in microbial pathogens
... stress). Nevertheless, this type of sex does conform to the two fundamental aspects mentioned above. In bacteria, the process of transformation, involving uptake of homologous DNA from the environment followed by recombination, is a widespread sexual process in nature. Among viruses, recombination b ...
... stress). Nevertheless, this type of sex does conform to the two fundamental aspects mentioned above. In bacteria, the process of transformation, involving uptake of homologous DNA from the environment followed by recombination, is a widespread sexual process in nature. Among viruses, recombination b ...
Recombinant DNA Technology
... eukaryotes so majority of the library will contain non-coding pieces of DNA • Many organisms have very large genome, so searching for gene of interest is difficult at best Copyright © 2009 Pearson Education, Inc. ...
... eukaryotes so majority of the library will contain non-coding pieces of DNA • Many organisms have very large genome, so searching for gene of interest is difficult at best Copyright © 2009 Pearson Education, Inc. ...
Using a Single-Nucleotide Polymorphism to Predict
... PROZAC® and Paxil®. In this experiment, a sample of human cells is obtained by saline mouthwash. DNA is extracted by boiling with Chelex resin, which binds contaminating metal ions. Polymerase chain reaction (PCR) is then used to amplify a short region of the TAS2R38 gene. The amplified PCR product ...
... PROZAC® and Paxil®. In this experiment, a sample of human cells is obtained by saline mouthwash. DNA is extracted by boiling with Chelex resin, which binds contaminating metal ions. Polymerase chain reaction (PCR) is then used to amplify a short region of the TAS2R38 gene. The amplified PCR product ...
Genes for Cognitive Function: Developments on the X
... Figure 1 A flow diagram of the current approaches and resources available for mapping and identification of MRX genes. Currently two bags of resources are widely used, MRX families (large, lod>2, and small lod<2) and individual patients with X aberrations. Undoubtedly new technologies will play a ma ...
... Figure 1 A flow diagram of the current approaches and resources available for mapping and identification of MRX genes. Currently two bags of resources are widely used, MRX families (large, lod>2, and small lod<2) and individual patients with X aberrations. Undoubtedly new technologies will play a ma ...