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Table S3
Mean protein sequence similarities of transcripts to the genes in its reference genome.
Values are displayed for taxa within phylogenetic orders that contain more then 5 taxa
and the pool of all transcripts assigned to taxa with ≥ 2,000 transcripts in each of the
treatments in one of the experiments. Similar mean values for protein sequence
similarities among orders and the complete dataset indicate that the quality of
transcript assignment to taxa was not biased among phylogenetic orders.
Phylogenetic order
Mean sequence similarity (± standard deviation)
Alteromonadales
87.9 ± 10.6
Oceanospirillales
87.8 ± 12.4
Pseudomonadales
80.7 ± 13.0
Rhodobacterales
85.7 ± 11.9
All taxa ≥ 2,000 transcripts 86.9 ± 11.6