Download gaurav narale - University of California San Diego

GAURAV NARALE
8520, COSTA VERDE BLVD
APT 3114, SAN DIEGO CA
CELL: (315)–450- 9337
[email protected]
OBJECTIVE: Bioinformatics - Software Engineer - Data Analyst position.
Currently Working as Software Engineer Intern at Dept of Computer Science, UCSD.
Projects:
 Mass Spectroscopy Data Analysis and Visualization: Written code in C++ on Unix platform
to develop an application to analyze mass spec data and generate graphical output of mass
spec spectrum based upon data. Worked on peptide server of UCSD, used GD graphics
library to generate mass spec spectrum and generate output in the form of jpg and png
images. (Dr. Bafna)
 Protein Functional Database Design and Operation: Designed schema for a complete
protein database (specific to PTS pathway system) and created the tables and columns using
mysql. Used local blast to generate data. Written programs extensively in Java, Perl, CGI and
PHP to parse the output data, generate sql queries and update database. Database connectivity
using Java JDBC- Connector/J and Perl to mysql database.
SUMMARY OF QUALIFICATIONS
An accomplished Software Engineer specialized with extensive experience in the field of Scientific
Software Development to design, develop and implement applications. Written approx. 20000 lines
of code to design front-end back-end applications, analyze and process scientific data and generate
customized output in different visual formats.
 Masters in Chemical Engineering with 2+ years of extensive Computational Chemistry and
Scientific Software Development Experience on Windows and Unix (Mac, Solaris).
 Expertise in Object Oriented Analysis/Design in Java. Solid knowledge of client-server
architecture. Skilled in advanced J2EE technologies JSP, Servlets.
 Expertise in Microsoft technologies in C, C++ and Server side scripts using ASP, PHP from
HTML and JavaScript, VbScript interface. Extensive work experience handling various
databases, data migration and management. Professional experience in designing WebPages,
creating company logos and animations.
 Extensive experience in data analysis and visualization, datamining of specific molecules in
genomic database, 3D modeling of molecules, molecular dynamics and energy minimization,
sequence alignment and homology, phylogenetic analysis and evolutionary pathway studies.
TECHNICAL EXPERTISE
Programming:
Server Side Scripts:
RDBMS:
Web Servers:
Development Tools:
Platforms:
Java, J2EE, JSP, Servlets, JDBC, SAX/DOM, Beans, C++, C, ASP.
Perl, Python, Shell Script, VbScript, JavaScript, CGI, PHP, ColdFusion
Oracle, Sybase, MySQL
IIS, PWS, JWS, Apache, Weblogic.
Forte, Prism, Visual Studio, WinCVS, CompareIt.
Unix, SGI, Mac, Windows, Distributed computing.
Gaurav Narale
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PROFESSIONAL EXPERIENCE
Software Engineering Intern, San Diego CA
Dept. of Computer Science, University of California San Diego
6/04 – Present
Software Engineer, Syracuse, NY
Health Science Center.
5/03 – 5/04
 Programming in C and C++ to develop bioinformatics software utilities to parse sequences,
convert formats and data extraction. Datamining and identification novel RNA molecules in
genomic sequence database using computational techniques.
 2D profile matching, computational search, identification and modeling of enzyme RNase MRP
in yeast genome to determine its role in disease called Cartilage-hair hypoplasia.
 Administered UNIX, SGI and Solaris parallel computing clusters.
My work resulted in a publication in journal of 'Lecture notes in Computer Science' (2004).
Software Engineer, Nagpur, India
Premier Technology Group alliance EZData Corporation, Pasadena CA.
7/01 – 7/02
 Worked on Enterprise CRM platform, programming in Java, front-end back-end communication,
JSP and Servlet handling, hands on with server configuration, database handling and
management, query generation, data submission and retrieval.
 Written approx 10000 lines of code in java to design a web based email client using Java Mail
APIs. Worked on a number of modules for generation of crystal reports, dynamic pdf
generations.
ACADEMIC BACKGROUND
Syracuse University, Syracuse, NY
Masters in Chemical Engineering, Spn. in Bioinformatics [3.4/4.0]
Thesis: Computational Identification RNA Motifs in Genome Sequences
(Advisor: Mark Schmitt, SUNY Upstate Medical Univ, NY)
Laxminarayan Institute of Technology, India
Bachelors in Chemical Engineering [3.9/4.0]
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Awards and Honors
'Young Investigator', Young Investigator Sponsorship Program, eCheminformatics 2003
Conference, Application of Cheminformatics to Drug Discovery, Nov 10-14
College of Engineering Merit Scholarship, Syracuse University, NY.
Publications
Gaurav Narale, Jacques Beaumont, Philip A. Rice, Mark E. Schmitt. Computational
Identification of RNA Motifs in Genome Sequences, Lecture Notes in Computer Science,
Publisher: Springer-Verlag Heidelbergpp. 138 : 143 (2004)
Gaurav Narale, Mark Schmitt. RNA Motif Identification in Genomic Databases. Proceedings at
Biomedical Science Retreat, Skaneateles Falls, NY.05 Sep (2003)
Posters
eCheminformatics 2003, Virtual conference in ‘Application of cheminformatics to drug
discovery’, 10-14 Nov, 2003
Biomedical Science Retreat, Skaneateles Falls, NY.05 Sep, 2003.