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Am J Physiol Cell Physiol 299: C537, 2010; doi:10.1152/ajpcell.00159.2010. Letter To The Editor Reply to “Letter to the editor: ‘Systemic cell theory, protoplasmic theory, and their logic of explanation’” G. Rickey Welch1 and James S. Clegg2 1 Department of Biological Sciences and Department of History, University of Maryland, Baltimore, Maryland; and 2Bodega Marine Laboratory and Section of Molecular and Cellular Biology, University of California, Davis, California REPLY: Address for reprint requests and other correspondence: G. R. Welch, Dept. of History and Philosophy of Science, Univ. of Cambridge, Free School Lane, Cambridge CB2 3RH, UK (e-mail: [email protected]). http://www.ajpcell.org braced the idea. Indeed, this notable metaphor has a rich history in the annals of cell biology and biochemistry [see articles by D. J. Haraway (1) and G. R Welch (3)]. Regarding Müller-Strahl’s concern over a “systemic cell theory,” we would respond that the entire final section of our article is devoted to the seminal query: What is “cellular systems biology?” Every cell biologist today reckons that the cell is a “system,” though the meaning and implication of that term have (and, likely, always will be) subject to diverse interpretation. Far be it for us to attempt to define a unified “systemic cell theory” in our perspectives article. A critical point, which we raise in the last section, is that cell biologists today—faced with an overwhelming mass of “-omic” data hailed under the rubric of so-called “systems biology”—are, indeed, scratching their heads anew over what “system” signifies. With the “protoplasmic theory” (which is the first widespread attempt to address the “cellular systems” issue in the era of modern biology) coming to the fore 150 years ago, it seemed to us a propitious time to “reflect” on the thematic concepts then and now. Our hope is that such a reflection may give some bearing to today’s “cellular systems biology.” For those readers interested in a more philosophically oriented “analytical history” based on a “logical structure of explanation,” we might refer them to the following article (4): Welch, GR, “Physiology, physiomics, and biophysics: a matter of words” (which is also cited in our perspectives article). We would like to thank Dr. Müller-Strahl for his engaging response and for his opinion that our article will “serve as a valuable starting point for further epistemological research pertaining to cell physiology.” We could not wish for more. DISCLOSURES No conflicts of interest, financial or otherwise, are declared by the authors. REFERENCES 1. Haraway DJ. Crystals, Fabrics, and Fields: Metaphors of Organicism in Twentieth-Century Developmental Biology. New Haven, CT: Yale University Press, 1976. 2. Welch GR, Clegg JS. From protoplasmic theory to cellular system biology: a 150-year reflection. Am J Physiol Cell Physiol 298: C1280 –C1290, 2010. 3. Welch GR. An analogical “field” construct in cellular biophysics: history and present status. Prog Biophys Mol Biol 57: 71–128, 1992. 4. Welch GR. Physiology, physiomics, and biophysics: a matter of words. Prog Biophys Mol Biol 100: 4 –17, 2009. 0363-6143/10 Copyright © 2010 the American Physiological Society C537 Downloaded from http://ajpcell.physiology.org/ by 10.220.33.3 on June 16, 2017 We appreciate the interest expressed by Dr. MüllerStrahl in our article (2) for American Journal of PhysiologyCell Physiology (AJP-Cell). He raises concerns regarding our historiographical approach to the notions of “protoplasmic theory” and “cellular systems biology” that feature prominently in our treatise. We are a bit perplexed by the contention that “readers of the article are left alone to establish their own concepts of the theoretical backgrounds of systemic cell and protoplasmic theory.” Judging from Müller-Strahl’s evocation that AJP-Cell should require “metatheoretical” historical studies which apply the methods of “an analytical history of science” and account for a “logical structure of explanation,” it would seem that he is proposing that AJP-Cell follow the modus operandi of a history (or philosophy) of science journal. It is beyond our purview to say whether or not AJP-Cell should follow this model for the design of its future historical articles. As the title of our article indicates, it is a “reflection” commentary submitted under the auspices of the journal’s “historical perspectives” schema. Our historical approach is thematic, episodic, and saltatory. We do not, in fact, present “a harmonious evolution of atomistic physiology with a continuous progression of empirical knowledge which is integrated into a rather stable conceptual framework.” Quite the contrary, we discuss the controversies surrounding the key ideas, as they emerged and evolved. In particular, we take great care in the elaboration of the “protoplasmic theory”— both in its conceptual origination and in its historical implications. Müller-Strahl proposes that a dualistic “cell versus protoplasm” view constitutes the correct historical assessment of the 19th century. We could not agree more, and this is how we tried to depict that era. When the dualistic duel was over, the term “cell” lived on in the biological lexicon, and the word “protoplasm” died out. Müller-Strahl offers that “the search for mechanisms is one concept which collides neither with cell nor with protoplasmic theory.” We wholeheartedly concur. This is our closing point in the final paragraph of the article. It is physiology that ranks supreme. Müller-Strahl emphasizes the “quasi-crystalline” image in relation to cellular infrastructure. Many thinkers have em-