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IUBMB Life, 56(2): 65–81, February 2004 Critical Review Aneuploidy, the Primary Cause of the Multilateral Genomic Instability of Neoplastic and Preneoplastic Cells Peter Duesberg1,2, Alice Fabarius2 and Ruediger Hehlmann2 1 Dept. Mol. and Cell Biol., Donner Laboratory, UC Berkeley, Berkeley, CA 94720, USA III. Medizinische Klinik Mannheim of the University of Heidelberg at Mannheim, Wiesbadener Str.7-11, 68305 Mannheim, Germany 2 Summary Cancers have a clonal origin, yet their chromosomes and genes are non-clonal or heterogeneous due to an inherent genomic instability. However, the cause of this genomic instability is still debated. One theory postulates that mutations in genes that are involved in DNA repair and in chromosome segregation are the primary causes of this instability. But there are neither consistent correlations nor is there functional proof for the mutation theory. Here we propose aneuploidy, an abnormal number of chromosomes, as the primary cause of the genomic instability of neoplastic and preneoplastic cells. Aneuploidy destabilizes the karyotype and thus the species, independent of mutation, because it corrupts highly conserved teams of proteins that segregate, synthesize and repair chromosomes. Likewise it destabilizes genes. The theory explains 12 of 12 specific features of genomic instability: (1) Mutagenic and nonmutagenic carcinogens induce genomic instability via aneuploidy. (2) Aneuploidy coincides and segregates with preneoplastic and neoplastic genomic instability. (3) Phenotypes of genomically unstable cells change and even revert at high rates, compared to those of diploid cells, via aneuploidy-catalyzed chromosome rearrangements. (4) Idiosyncratic features of cancers, like immortality and drug-resistance, derive from subspecies within the ‘polyphyletic’ diversity of individual cancers. (5) Instability is proportional to the degree of aneuploidy. (6) Multilateral chromosomal and genetic instabilities typically coincide, because aneuploidy corrupts multiple targets simultaneously. (7) Gene mutation is common, but neither consistent nor clonal in cancer cells as predicted by the aneuploidy theory. (8) Cancers fall into a near-diploid (2 N) class of low instability, a near 1.5 N class of high instability, or a near 3 N class of very high instability, because aneuploid fitness is maximized either by minimally unstable karyotypes or by maximally unstable, but adaptable karyotypes. (9) Dominant phenotypes, because of aneuploid genotypes. (10) Uncertain developmental phenotypes of Down and other aneuploidy syndromes, because supply-sensitive, diploid programs are Received 10 October 2003; accepted 8 December 2004 Address correspondence to: Peter Duesberg, Department of Molecular and Cell Biology, Donner Laboratory, UC Berkeley, Berkeley, CA 94720, USA. Tel: 510-642-6549. Fax: 643-6455. E-mail: [email protected] ISSN 1521-6543 print/ISSN 1521-6551 online # 2004 IUBMB DOI: 10.1080/15216540410001667902 destabilized by products from aneuploid genes supplied at abnormal concentrations; the maternal age-bias for Down’s would reflect age-dependent defects of the spindle apparatus of oocytes. (11) Non-selective phenotypes, e.g., metastasis, because of linkage with selective phenotypes on the same chromosomes. (12) The target, induction of genomic instability, is several 1000-fold bigger than gene mutation, because it is entire chromosomes. The mutation theory explains only a few of these features. We conclude that the transition of stable diploid to unstable aneuploid cell species is the primary cause of preneoplastic and neoplastic genomic instability and of cancer, and that mutations are secondary. IUBMB Life, 56: 65–81, 2004 Keywords Autocatalytic karyotype evolution; speciation; aneuploidy-dependent gene mutation; drug-resistance; immortality; metastasis; developmental uncertainty. INTRODUCTION Cancers are at once clonal (1 – 3) and non-clonal (3 – 11) – and thus a geneticist’s nightmare. Even though cancers are derived from a single cell, their cells are, more or less, heterogeneous with regard to DNA content (12), chromosome numbers and abnormal structures (3, 6, 13, 14), gene mutations (15 – 17), ‘immortality’ in vitro and on transplantation (18 – 21), abnormal expression of genes (11, 16, 22), abnormal numbers of spindle poles (23, 24), abnormal metabolism (25), resistance to cytotoxic drugs (26, 27), ability to metastasize (28), a risk for ‘delayed reproductive death’ (29 – 32), and even carcinogenicity itself (see below), (4, 5, 8). There is but one solution to this apparent paradox: Cancers are clones, which are derived from single, genomically unstable cells. Owing to this cellular genomic instability cancers are heterogeneous, consisting of subclones with subclone-specific karyotypes, genes and phenotypes. The rates at which cancer cells and tumorigenic cell lines spontaneously change their karyotypes range from lows of a 66 DUESBERG ET AL. few percent to highs approaching 100% per mitosis (33 – 35). At the same time such cells spontaneously change phenotypes, such as drug-resistance and cell morphology, at the abnormally high rates of 1073 to 1076 per mitosis (26, 27). As a result of this genomic instability ‘No single tumor is composed of genetically identical cells’ (36), and cancers are said to be ‘chock-full of mutations and chromosomal abnormalities’ (15). By contrast, the rates at which normal, diploid cells spontaneously lose, gain or rearrange chromosomes are only 1073 to 1075 per mitosis (37, 38). Spontaneous phenotype alterations occur in normal cells only at rates of 1076 to 1077 based on mutations of haploid genes and at rates of 10712 to 10714 based on mutation of diploid genes (21, 26, 27, 39). However, genomic instability is not limited to cancer cells. It is also observed in previously normal, but as yet untransformed cells soon after treatment with carcinogens as well as in congenital aneuploidy syndromes (39, 179). For example, in the 1940s Charlotte Auerbach et al. first observed ‘unstable genes’ with ‘a tendency to mutate, which remains latent until a later cell division’ in Drosophila cells treated with alkylating carcinogens (40). Mammalian cells are also rendered genomically unstable by experimental carcinogens applied in vivo or in vitro (2, 25, 31, 41), or just by propagating normal cells in vitro (42 – 44). In addition to a persistent ‘tendency to mutate’, genomically unstable mammalian cells also have a tendency to undergo ‘a delayed reproductive death’ (2, 29, 30, 45, 46) and an even more delayed tendency to transform themselves into cancer cells. In vivo, the delay from carcinogen to cancer takes a minimum of many months in carcinogen-treated rodents, and takes years to decades in humans accidentally or occupationally exposed to carcinogens (2, 47 – 50). Because of their inherent risk to become neoplastic, genomically unstable cells are considered ‘initiated’ or ‘preneoplastic’ (2, 45, 47, 51). To account for the heterogeneous karyotypes and phenotypes of cancers, researchers have long postulated that carcinogenesis must be initiated by genomic destabilization (3, 5, 7, 45, 50, 52). For example, von Hansemann wrote in 1890, ‘The anaplastic cell is one in which, through some unknown agency, a progressive disorganization of the mitotic process occurs’ (53, 54). Nowell proposed in 1976, ‘Acquired genetic instability permits stepwise selection of variant sublines and underlies tumor progression’ (3). However, Nowell, as well as his predecessors, left open the question, whether gene mutations or chromosomal alteration are the primary cause of the underlying genomic instability, which he called ‘the genetic-versus-epigenetic debate’ (3). This defines the challenge: which and how many of the multiplicity of chromosomal alterations and genetic mutations of cancer cells and their preneoplastic precursor cells are responsible for genomic instability? Despite over 100 years of cancer research, it is still debated, whether aneuploidy or gene mutation is the primary cause of genomic instability (15, 17, 49, 50, 55 – 58). Aneuploidy is defined as an abnormal balance of chromosomes or ‘by loss or duplication of chromosomes or chromosomal segments’ by the textbook, Genes (21), which defines mutation as ‘any change in the sequence of genomic DNA’ (21). Here we briefly review the mutation and aneuploidy theories of genomic instability. Then we determine which theory is better suited to explain 12 specific features of the genomic instability of neoplastic and preneoplastic cells. The Theory that Gene Mutation is the Primary Cause of the Genomic Instability of Neoplastic and Preneoplastic Cells Several gene mutation theories are currently advanced to explain the genomic instability of cancer cells (15, 56 – 62). According to a recent review, ‘In general, these theories assume that genomic instability is derived from mutations in genes that are involved in processes such as DNA repair and chromosomal segregation. The mutations of the ‘‘mutator genes’’ have no direct selective advantage or disadvantage, only an effect on the mutation rates of other genes.’ (58). However, the necessity of such ‘‘mutator genes’’ (63, 64) for carcinogenesis has recently been questioned for four different reasons: (1) (2) (3) Mutator genes are only detected in a small minority of cancers (15, 29, 33, 36, 49, 56, 58, 60, 65 – 69). Likewise, the mutations that are thought to create them are neither consistent nor clonal in cancers (see Feature #7 below). In view of this Rajagopalan et al. proposed, ‘epigenetic events that do not involve mutational changes in nucleotides could certainly have a significant role.’ (57). Among the mutator genes that have been found, some, as for example the adenomatous polyposis coli (Apc) and the p53 tumor suppressor genes, are now considered consequences rather than causes of genomic instability (70 – 73). According to a review by Lengauer et al., ‘p53 mutations do not usually occur until much later [after initiation of carcinogenesis]’ and thus ‘are unlikely to be its primary cause’ (36). There is as yet no functional proof for a direct role of mutator genes in carcinogenesis (28, 32, 49, 74). For example, in experimental mice with a transgenic lambda phage as indicator of mutagenesis, ‘the frequencies of lambda cII-mutants were not significantly different in normal mammary epithelium, primary mammary adenocarcinomas, and pulmonary metastases’ (75). Moreover, mice with null mutations of p53 and with deletion mutants of Apc proved to be ‘surprisingly’ procreative, and thus not genomically unstable (76, 77). In view of this, the study on p53 concluded, ‘an oncogenic mutant form of p53 is not obligatory for the genesis of many types of tumours’ (76), and the study on Apc concluded, ‘Most importantly, Apc1638T/1638T animals that sur- ANEUPLOIDY, THE PRIMARY CAUSE vive to adulthood are tumor free’ (77). ‘Surprisingly’ encore, mice with null mutations of the cyclin-dependent kinase 2, another hypothetical tumor suppressor and cell cycle control gene (78), were recently also found to be sufficiently stable to survive to adulthood – again cancer free (79). Some studies of mice with mutated tumor suppressor genes point out that such mice have higher risks of cancer than untreated controls owing to their artificial mutator genes (16), as for example the study on mice without p53 (76). However, carcinogenesis in such animals is both age- and ‘strain-dependent’ (76), indicating that their artificial genes are not sufficient for carcinogenesis. A calculation of the cellular cancer risk of these mice makes this point even more obvious. Since cancers originate from single cells (2, 6, 80), and since mice consist of about 5 6 1010 cells and have renewed many of their cells by the time they develop cancers, their cellular cancer risk is less than 5 6 10710. This extremely low cellular cancer risk undermines the argument for a direct role of such genes in carcinogenesis. (4) The hypothesis, that an elevated rate of mutation is necessary for carcinogenesis, is also burdened by an inherent paradox, which was described in a recent review as follows, ‘an elevation of mutation rate must generally be regarded as a growth disadvantage to the cell. Models which disregard such mechanisms are particularly incompatible with the growing amount of data indicating that practically all neoplastic cells express some form of genomic instability’ (50). Tomlinson et al. expressed the same reservations about the mutator gene hypothesis, ‘The scenarios for a role of a raised mutation rate assume that there is no selective disadvantage to a cell in having an increased number of mutations. This may not be the case: for example, a deleterious or lethal mutation may be much more likely than an advantageous mutation. More subtly, an accumulated mutational load might induce apoptosis’ (67). Thus, there is as yet no consistent correlative or functional proof for any of the mutation theories. Moreover the suicidal consequences of persistent and autocatalytically escalating numbers of mutator genes are hard to reconcile with the long latency and many cell generations between initiation of preneoplastic genomic instability and cancer, and even harder with the immortality of cancer cells (49). In view of this we advance here the theory that aneuploidy is the primary cause of genomic instability. The Theory that Aneuploidy is the Primary Cause of the Genomic Instability of Neoplastic and Preneoplastic Cells The aneuploidy theory proposes that corruption of the highly conserved chromosome balance of a diploid species, alias aneuploidy, is the cause of genomic instability (Fig. 1). 67 Aneuploidy destabilizes the numbers and structures of chromosomes because it unbalances the highly conserved teams of proteins, which segregate, synthesize and repair chromosomes. Since unbalanced teams of mitosis proteins are error-prone, they are likely to change the numbers and structures of chromosomes, and thus the cell’s species, every time the cell divides (35). In other words, aneuploidization is analogous to phylogenesis, which also generates new species by rearranging old genes into new sets of chromosomes (81). Aneuploidy also increases the spontaneous rates of gene mutations by corrupting protein teams that repair DNA and synthesize nucleotide pools (82, 83). Thus the aneuploidy theory postulates that the genomic and phenotypic heterogeneity of preneoplastic and neoplastic cells is a direct consequence of the inherent instability of aneuploidy. In contrast to the mutation theory, the aneuploidy theory proposes that genomically unstable preneoplastic and neoplastic cells are new, albeit unstable species of their own, rather than mutations of their precursors. Further, the aneuploidy theory proposes, that the inherent instability of aneuploidy is sufficient for the somatic evolution of neoplastic cells from randomly aneuploid precursors. According to the theory, carcinogenesis is initiated by a random aneuploidy, which is either induced by a carcinogen or arises spontaneously (49) (Fig. 1). The inherent instability of aneuploidy then initiates and catalyzes a chain reaction of aneuploidizations, which would provide ever-more aneuploid species for selection for autonomous growth. However the theory also predicts that carcinogenesis is not a necessary consequence of aneuploidy, because the probability that a random karyotype variation generates a cell species that is more viable than its diploid precursor, with a 3 billion-year advantage of evolution, is much lower than the probability of generating a less viable or non-viable species. Such less viable and non-viable species would derive either from nullisomies, or other non-viable or less viable chromosome combinations or from gene mutations (Fig. 1). Specific Features of Neoplastic and Preneoplastic Genomic Instability In the following we first describe 12 specific features, which define the genomic instability of neoplastic and preneoplastic cells, and then test the aneuploidy and mutation theories for their ability to explain these features. (1) Mutagenic and non-mutagenic carcinogens induce genomic instability. Both mutagenic and non-mutagenic carcinogens induce genomic instability. The mutagenic carcinogens include ionizing radiation (31, 84 – 86), alkylating agents (20, 87, 88), DNA chain-terminators (41) and others (89). The non-mutagenic carcinogens include polycyclic aromatic hydrocarbons (41, 89 – 91), mineral oil (92, 93), butter yellow (94), bisphenol (95), colcemid (96), hormones (97), inert plastic and metallic ‘solid bodies’ (30, 98), nonmutagenic tumor promoters (99), nickel and cadmium ions 68 DUESBERG ET AL. Aneuploidy-catalyzed cell death nullisomies non-viable chromosome assortments lethal mutations Chromosomes: * normal, collateral mutations, large-scale rearrangement, substantial deletion Figure 1. Genomic instability and carcinogenesis via aneuploidization. The aneuploidy theory predicts that almost any nonlethal aneuploidy generates numerical and structural instability of chromosomes by unbalancing teams of proteins that segregate, synthesize and repair chromosomes and maintain the integrity of genes – independent of gene mutation. Thus aneuploid cells undergo chromosome non-disjunctions and gene mutations due to error-prone chromosome segregation and error-prone DNA repair and synthesis. This inherent instability of aneuploidy initiates and then catalyzes a chain reaction of aneuploidizations and mutations. The initiating aneuploidy is generated either by a carcinogen or spontaneously. Most products of this aneuploidy-catalyzed karyotype evolution will be cells, which are non-viable due to nullisomies, non-viable chromosome combinations or lethal mutations, or cells, which are less viable than their diploid progenitors with a 3 billion-year advantage of evolution. However, there is a low probability of chromosome rearrangements with selective advantages for semi-autonomous growth in the permissive habitat of the host organism. These will be the basis for the somatic evolution of cancer cells. Thus carcinogenesis is analogous to phylogenesis, which generates new species with new phenotypes by regrouping old, phylogenetically conserved genes into new sets of chromosome (see text). Accordingly genomically unstable, aneuploid cells and cancer cells are new cell species, rather than mutants of diploid precursor cells. However, in contrast to autonomous phylogenic species, cancer cells contain unbalanced, aneuploid and thus genomically unstable karyotypes. ANEUPLOIDY, THE PRIMARY CAUSE (18, 30, 100), and asbestos (89, 101). Even ‘extranuclear’ (86), or ‘cytoplasmic’ (31), or ‘non-DNA damage’ (102) radiation induces chromosomal instability in animal and human cells. (2) Aneuploidy coincides and segregates with preneoplastic and neoplastic genomic instability. Since aneuploidy is ubiquitous in human cancer cells (6, 13, 14, 103 – 105, 205), numerous investigators have asked whether aneuploidy precedes carcinogenesis. All of these have found aneuploidy at ‘an early stage’ (106) or as an ‘early event’ (114, 205) in human precancerous neoplasias of the cervix, throat, colon (with and without microsatellite mutations (205, 206)), lung, skin, pancreas, gonads, esophagus and acute leukemias (6, 56, 68, 103, 106 – 121, 207). Animal experiments with carcinogens, undertaken to study the origin of aneuploidy in carcinogenesis, have also found aneuploidy prior to carcinogenesis in the liver, skin and subcutaneous tissues of carcinogen-treated rodents (90, 94, 98, 122 – 125), (unpublished observations). It is relevant in this context to point out that carcinogens can induce two different types of lesions, namely aneuploidies with or without neoplastic phenotypes, and diploid hyperplasias, possibly via gene mutation (80, 90, 126). Treatments of diploid human and animal cells in vitro with carcinogens, at carcinogenic doses, also generate aneuploidy and persistent or ‘delayed’ genomic instability (18, 41, 87, 88, 127 – 135). In all of these experiments aneuploidy always segregates with preneoplastic genomic instability and subsequently with morphological transformation and tumorigenicity (41, 88). For example, Holmberg et al. report in 1993 ‘an increased frequency of sporadic chromosome aberrations was only observed in irradiated cells with aberrant karyotypes and not in irradiated cells with normal karyotypes, which suggests that the ‘‘genomic instability’’ in these clones is associated with the abnormal karyotype rather than with the radiation exposure as such’ (133). Aneuploidy also precedes and subsequently segregates with transformation of human and animal cells by Simian Virus 40 and other DNA tumor viruses (136 – 138). Even spontaneous transformation of cells in vitro is preceded by, and inevitably associated with aneuploidy (42 – 44). By contrast, events that induce balanced chromosome translocations are not expected to induce genomic instability according to the aneuploidy theory. The Philadelphia chromosome and its reciprocal counterpart, which are associated with most chronic myelocytic leukemias (CML), are a classical example. The two reciprocally rearranged chromosomes are thought to induce a hyperplasia of genomically stable, terminally differentiating myeloblasts, probably via gene mutation involving the genes at the breakpoints of the two chromosomes (14, 28, 139). Indeed, the cellular risk of CML cells to become aneuploid is extremely low. Since the chronic phase of CML lasts on average 3 years and generates about 5 6 109 cells per patient, which have an approximate turn over time of 2 months (139, 140), the cellular risk of aneuploidiza- 69 tion is only about 10711 (1:3[yrs] 6 6[months] 6 5 6 109) (141). However, it is the occurrence of this rare cellular aneuploidy, which initiates the terminal, cancerous blast crisis of CML (14, 139). (3) Phenotypes of genomically unstable cells change and even revert at high rates, compared to those of diploid cells. Genomically unstable cells generate and even lose new, abnormal phenotypes at very high rates compared to normal diploid cells. For example, cancer cells may mutate to drug and multidrug-resistance at rates of up to 1073 per mitosis and many can mutate back at similarly high rates (26, 27). By contrast, the phenotypes of normal diploid cells, which are controlled by haploid genes, mutate spontaneously only at rates of 1076 to 1077 and those controlled by diploid genes only at rates of 10712 to 10714 (26, 27, 29). Even malignancy is reversible at high rates in the non-selective condition of cell culture. For example, extraction of ‘less virulent clones’ from highly malignant ascites tumors was achieved by Hauschka et al. (45). Hsu derived even benign cultures from a virulent rat Novikoff hepatoma (142). Eagle et al. obtained ‘loss of neoplastic properties’ in clonal derivatives of a human carcinoma cell line in parallel with ‘characteristic’ karyotype alteration (4). Simi et al. and Sachs et al. also observed loss of the transformed phenotypes together with specific chromosomal alterations at high rates in transformed Chinese hamster cells, as well as subsequent reversion to malignancy (143 – 145). And Fidler et al. observed reversibility and backreversibility of metastatic phenotypes of mouse melanoma cells at relatively high rates (8). (4) Idiosyncratic phenotypes of cancer and other genomically unstable cells, such as immortality and drug-resistance, are never observed in diploid biology. A given cancer as well as cultures of immortal cell lines survive many adverse conditions, such as toxic drugs, otherwise lethal mutations, metastasis to heterologous sites, transplantation to heterologous hosts and even to heterologous species, indefinite generations in cell culture or in transplants from animal to animal, as if they were immortal (see Introduction). By contrast, none of these phenotypes have been observed in diploid cell populations of the same size, or in diploid biology, despite 3 billion years of evolution and mutation. (5) Chromosomal and phenotypic instabilities are proportional to the degrees of aneuploidy. Based on analyses of clonal cultures of cells with distinct degrees of aneuploidy, it was found that the rates of chromosomal alterations are proportional, even ‘exponentially’ (35) to the degrees of aneuploidy (34, 35, 146). In addition, karyotype and phenotype heterogeneity was reported to correlate with the degree of aneuploidy in primary human cervical, lung, colon, pancreatic, breast and gastric cancers (147 – 152). This karyotypic and phenotypic heterogeneity of most clonal cancers is an inevitable consequence of the inherent chromosomal instability of aneuploid cells. Structural heterogeneity of the chromosomes of human cancers has also been reported to 70 DUESBERG ET AL. correlate with degrees of malignancy, without data on aneuploidy (153). However, since malignancy is directly proportional to the degree of aneuploidy (3, 49, 68, 103, 105, 154 – 157), degrees of malignancy serve as surrogate markers for degrees of aneuploidy. Transplantability of rodent cancers to heterologous hosts is also proportional to the degree of aneuploidy, because the range of variant sub-species with distinct host ranges depends on the degree of aneuploidy (158). As expected heterogeneity of centrosome numbers and structures is also proportional to the degrees of aneuploidy (24, 159). (6) Multilateral chromosomal and genetic instabilities typically coincide in the same cells. Most genomically unstable cells, above all cancer cells, differ from normal cells not only in abnormal chromosome numbers, but also in abnormal chromosome structures and gene mutations (13, 15, 29, 32, 36, 50, 55, 56, 160). Thus there is a coincidence of multiple mechanisms of genomic instability in most genomically unstable cells, particularly in cancer cells: one that alters chromosome numbers, one that rearranges chromosome structures and simultaneously some genes at the respective breakpoints, and one that mutates individual genes. (7) Gene mutation is common, but neither consistent nor clonal in cancer cells. About 50% of all cancers of a given kind contain various gene mutations of hypothetical oncogenes and tumor suppressor genes (24, 66, 68, 161 – 163). However, consistent correlations between such mutations and specific kinds of cancers have not been found (28, 66, 74, 141). For example, Little reports ‘While radiation-induced cancers show multiple unbalanced chromosomal rearrangements, few show specific translocations or deletions as would be associated with the activation of known oncogenes or tumor suppressor genes’ (31). Grosovsky et al. also find, ‘no consistent elevation of specific locus mutation rate has been reported’ (29). Further Gisselson et al. note, ‘the correlation coefficient between breakpoint frequency and telomere length [a potential mutator] was low in both osteosarcomas and pancreatic sarcomas’ (208). A recent statistical analysis of the relation between gene mutations and cancer arrived at the conclusion that ‘no tumor has the same spectrum of mutations’ (208). A survey of genomic instability by Lengauer et al., in addition to discounting a role for p53 (see above), states in 1998 (a) ‘no consistent pattern of defects in polymerases has been found in tumors’ and (b) mismatch repair deficiencies are only in ‘13% of colorectal, . . . endometrial and gastric cancers . . . other types are rarely (5 2%) MMR-deficient’ (36). Moreover, mutations of oncogenes and tumor-suppressor genes of many clonal cancers are non-clonal, and thus not necessary for carcinogenesis (16). In the words of a recent survey by Scientific American, ‘A few cancer-related genes, such as p53, do seem to be mutated in the majority of tumors. But many other cancer genes are changed in only a small fraction of cancer types, a minority of patients, or a sprinkling of cells within a tumor’ (17). However, if gene mutations are found, they are proportional to the degree of aneuploidy (165) or of malignancy (163), which is also proportional to aneuploidy (49, 154 – 157, 165). The following two studies on the occurrence of gene mutations in colon cancers illustrate the resulting confusions. After finding at least 11,000 random mutations in human colon cancers, Stoler et al. concluded, ‘Together these results support the model of genomic instability being a cause rather than an effect of malignancy, facilitating vastly accelerated somatic cell evolution . . .’ (166). But, Wang et al., who found about 3000 mutations, concluded that, ‘The accumulation of approximately one nonsynonymous somatic change per Mb of tumor DNA is consistent with a rate of mutation in tumor cells that is similar to that of normal cells. These data suggest that most sporadic colorectal cancers do not display a mutator phenotype at the nucleotide level’ (65). (8) Cancer cells fall into a near-diploid class of low and two most aneuploid classes of high genomic instability. The theory that cancer results from selections of random mutations among genomically unstable cells predicts a continuum of cancers with increasing degrees of genomic abnormalities. However, known cancers and even tumorigenic cell lines fall into a near diploid (2 N) class of low instability and two highly aneuploid classes of high instability – a relatively rare, near 1.5 N class and a very common, near 3 N class (14, 33, 34, 152, 167 – 170). (9) The phenotypes of genomically unstable, neo- and preneoplastic cells are dominant. In contrast to the recessive phenotypes of hereditary instability syndromes such as xeroderma pigmentosum, Fanconi’s anemia, hereditary nonpolyposis colon cancer, hereditary hyperplastic polyposis and Bloom syndrome (32, 58, 62, 69, 80, 171), the phenotypes of genomically unstable neoplastic and preneoplastic cells are dominant either directly or after a delay of several cell generations. The evidence for this dominance was gained from the following combinations of experimental fusions between cells with and without certain instability-specific phenotypes: (i) (ii) (iii) (iv) Instant or delayed tumorigenicity is dominant in hybrids consisting of normal and cancer cells (74). The delayed tumorigenicity typically follows a spontaneous loss and reassortments of various chromosomes (28, 74, 172). Delayed ‘reproductive death’ of irradiated Chinese hamster cells is dominant in hybrids with un-irradiated counterparts (173). Immortality is dominant in all ‘hybridomas’ made from normal, antibody producing immune cells and aneuploid, immortal mouse myeloma cells (74). Chromosomal instability of highly aneuploid colon cancer cells is dominant in cell hybrids made with near-diploid, chromosomally relatively stable counterparts (33, 34). ANEUPLOIDY, THE PRIMARY CAUSE (10) Uncertain developmental phenotypes and maternal age bias of Down and other congenital aneuploidy syndromes. Congenital aneuploidy syndromes such as Down syndrome are characterized not only by standard, but also by uncertain, developmental phenotypes (39, 179, 209). For example, a Down patient has a ‘300 times risk increase . . . for annular pancreas, cataracts and duodenal atresia, an about 100 times risk increase for megacolon and small choanal atresia, [and a] 10 and 30 times [risk increase for] esophageal, anal and small bowel atresia, preaxial polydactyly, and omphalocele’ compared to non-Down controls (210). In addition Down patients have 20-fold increased risks of leukemias compared to non-Down cases, which appear ‘at an age about 3 years younger than in the general population’ (179). Moreover, they have an increased risk (less than-20fold) of other cancers. The occurrence of Down syndrome is sporadic, but its risk is known to increase exponentially with the age of the mother (6, 39, 211, 212). However, the mechanism of this maternal age effect is as yet unknown. For example, Hassold et al. acknowledged in 1993 that ‘we know almost nothing about its basis’ (211), while Pellestor et al. proposed ‘an agedependent deterioration of some cellular factors’ in 2003 based on the analysis of the karyotypes of 1397 oocytes from women aged 19 – 46 (212). (11) Phenotypes without selective advantages are common in cancer cells. The theory that cancers evolve via a genetic variation-selection scheme, which conserves advantageous and discards deleterious mutations, predicts that all phenotypes of cancer cells are selected to contribute to malignancy (3, 42, 45, 60, 64, 174). However, contrary to this theory, the following non-selective phenotypes are common in cancers: (i) Immortality. Although many cancer cells are immortal, immortality is not required for carcinogenesis. Even a tumor of 1% of the mass of an adult animal or human would require only 1/6 of the cell generations, which the descendants of a fertilized egg normally achieve in ontogenesis. In culture normal, diploid human cells can grow about 50 generations (175), and thus about 18 generations more than a genomically unstable, preneoplastic cell needs to generate a potentially fatal tumor of 100 ml or 1010 cells (60). (ii) Resistance to cytotoxic drugs and even to multiple, unrelated cytotoxic drugs. Resistance to cytotoxic drugs is inherent in a minority of cells of practically all cancers and preneoplastic cell lines. But, drug-resistance is not a selective advantage for natural carcinogenesis (26, 27). In addition other non-selective, new morphological phenotypes co-segregate with some drug-resistant variants from transformed Chinese hamster, mouse and human cells (26, 27), (unpublished observations). (iii) The ability to metastasize. A minority of cells of nearly all cancers is able to metastasize (7, 8). However, even proponents of the mutation theory acknowledge that growth 71 at a heterologous site ‘would not seem to confer increased proliferative benefit at the native site’, as for example Bernards and Weinberg in a recent article entitled, ‘A progression puzzle’ (174). (iv) Transplantability to heterologous hosts even to heterologous host species. Transplantability is one of the definitions of cancer (7, 158). But, transplantability does not confer any selective advantages to natural carcinogenesis. (v) Susceptiblity to viruses whose host range does not include normal cell counterparts. This phenotype is common in cancer cells (45), but is of no selective value for carcinogenesis. (vi) ‘Silent’ or non-coding gene mutations. Some cancer cells accumulate non-selective mutations at abnormally high rates. But such silent or ‘selectively neutral’ mutations are irrelevant for the competitive survival of cancer cells (176). (12) The target, induction of genomic instability, is several 1,000-times bigger than the target, gene mutation. Since human cells contain 35,000 genes, at most a few of 35,000 cells irradiated with a dose that inactivates one gene per cell are likely to acquire a mutator gene that may cause genomic instability (assuming haploid genes). But, all strategies developed to aim at the target, mutator gene, or the ‘target genes’ of genomic instability have obtained an unexpectedly ‘high frequency’ of hits in view of the gene mutation theory (18). The following examples illustrate this point: (i) (ii) (iii) (iv) In 1992 Kadhim et al. observed ‘chromosomal instability’ at ‘high frequency’, namely in about 50% of mouse bone marrow cells that had survived alpha-irradiation. Since 10% of the cells had survived the treatment, the size of the target, genomic instability, was similar to that of cell lethality. Sabatier et al. also reported in 1992 that 50% of dermal fibroblasts from a normal human donor that had survived ionic neon radiation developed ‘chromosomal instability’ (85). In 1993, Holmberg et al. observed in irradiated cultures of human T-lymphocytes ‘unstable karyotypes . . . in about half of the X-irradiated clones’ (133). Bols et al. observed in 1992 that a single treatment with non-mutagenic benzpyrene was enough to render 3 – 10% of Syrian hamster embryo cells ‘immortal’, compared to none of the untreated controls (19). Trott et al. found that single treatments with ionizing alpha, gamma and neutron radiation at about half lethal doses, or treatments with non-mutagenic nickel chloride, at non-toxic doses, converted over 5% of surviving Syrian hamster embryo cells to immortality and chromosomal heterogeneity, compared to none of the controls (18). And 30% of the immortalized cultures generated morphologically transformed sub-clones spontaneously, soon after selection for clonogenicity or ‘immortality’ (18). 72 DUESBERG ET AL. Since mutagenic carcinogens, like radiation, mutate, at half-lethal doses, a specific gene in only 1 out of 10576 cells (29, 177), but induce genomic instability in 1 out of 2 – 30 surviving cells, the target, genomic instability, is about 3 – 6 orders bigger than the target, gene mutation. The features of genomic instability according to the aneuploidy hypothesis In the following we show how the aneuploidy theory explains the 12 features of genomic instability (see also Table 1). Feature #1. Non-mutagenic carcinogens can cause aneuploidy by disrupting the spindle apparatus (28, 89). For example, polycyclic aromatic hydrocarbons and colcemid can cause aneuploidy by intercalating into, and thus depolymerizing microtubules. Likewise ‘extranuclear’ (86) or ‘cytoplasmic’ (31) or ‘non-DNA damage’ (102) radiation can target the spindle apparatus at various non-chromosomal sites, as for example centrosomes. The non-DNA damage-study has indeed advanced ‘the hypothesis that . . . the mitotic spindle apparatus, may be involved in aberrations in chromosome segregation after X irradiation’ (102). Feature #2. Neoplastic and preneoplastic aneuploidy is self evident according to the aneuploidy theory. Feature #3. The high rates of variation and even reversion of cancer-specific phenotypes, such as drug-resistance, tumorigenicity, and metastasis, reflect the high rates of aneuploidycatalyzed chromosome reassortments and rearrangements of aneuploid cells (26, 27, 35), (Fig. 1). Feature #4. According to the aneuploidy theory, most cancers and cell lines are veritable zoos of chromosomally distinct, cellular species, despite their clonality. Such ‘polyphyletic’ cell populations, as Hauschka and Levan have called them previously (5), include species that can survive many adverse conditions, such as toxic drugs, otherwise lethal mutations, transplantation to heterologous sites and species etc., which are lethal to normal diploid cells and even to most cancer cells. As a result a given cancer survives many adverse conditions via preexisting, resistant subspecies from within its diverse, ‘polyphyletic’ population. By contrast, a given population of the same number of homogeneous, diploid cells would be unable to survive the same lethal conditions, because the normal rates of gene mutations would be many orders too low to save the population via pre-existing resistant variants (see Feature #3, above). Take, for example, the consistent failures of the normal cells of cancer patients to survive toxic chemotherapy, or the fact that despite 3 billion years of mutations (!) no diploid organism has ever achieved immortality, which all cancers do in matter of months or years. Feature #5. Aneuploidy-dependent chromosome instability is self evident according to the aneuploidy theory. Feature #6. The coincidence of different hypothetical mutator genes, generated by multiple, independent mutations in most cancers, is improbable. Therefore, several investigators have previously postulated a common underlying mechanism. For example, Grosovsky et al. postulated, ‘Elevated rates of chromosomal-scale and intragenic mutations may be attributable to independent processes, but their Table 1 Compatibility of 12 specific features of genomic instability with the aneuploidy and the gene mutation theories Feature of genomic instability 1 2 3 4 5 6 7 8 9 10 11 12 Induction by mutagenic and non-mutagenic carcinogens Aneuploidy coincides and segregates with preneoplastic and neoplastic genomic instability Phenotypes of unstable cells change and even revert at high rates, compared to gene mutation Idiosyncratic phenotypes of unstable cells, e.g. immortality and drug-resistance, are never observed in diploid biology Instability is proportional to the degree of aneuploidy Coincidence of multilateral chromosomal and genetic instabilities in the same cells Gene mutations are common, but neither consistent nor clonal in cancer cells Cancers fall into a near-diploid (2 N) class of low instability, a near 1.5 N class of high instability, and a near 3 N class of very high instability Dominant phenotypes Uncertain phenotypes and maternal age-bias of congenital aneuploidy syndromes like Down Syndrome Phenotypes without selective advantages The target, genomic instability, is several 1000-times bigger than the target, gene Mutation theory Aneuploidy theory +/7 7 + + 7/+ + 7 + 7 7/+ 7 7 + + + + 7/+ 7 + + 7 7 + + ANEUPLOIDY, THE PRIMARY CAUSE coincident appearance in the same clones indicates that they may each be a manifestation of a single underlying mechanism’ (29). Kobayashi et al. proposed, ‘the same molecular backgrounds’ because ‘MSI and LOH [microsatellite instability and loss of heterozygosity] tend to be coincident (72). Further, Masuda and Takahashi proposed ‘some overlap in their underlying mechanisms’ (149), which Matzke et al. confirmed with reference to them, ‘Chromosome numerical and structural alterations usually coexist in cancer cells, however, suggesting that they are inextricably linked’ (55). Indeed, aneuploidy provides a simple explanation for the coincidence of different mechanisms of genomic instability in most cancer cells (35), because it simultaneously unbalances thousands of functionally linked proteins (see Fig. 1). Feature #7. Gene mutations, including mutator genes, would only be generated in those genomically unstable cells, in which teams of enzymes involved in the synthesis and maintenance of DNA are corrupted by aneuploidy (35), (Fig. 1). Clonal mutations would derive from preneoplastic aneuploidy and non-clonal mutations would derive from neoplastic aneuploidy. This explains not only why gene mutations are common, but also why they are not consistently associated with genomically unstable cells and why they tend to be late and non-clonal (see Mutation theory). Feature #8. The distribution of cancers into different ploidy classes reflects two alternatives to maximize aneuploid fitness: a near-diploid class with a minimally unbalanced karyotype approaching the stability of normal karyotypes, and two highly aneuploid classes, a relatively rare, near 1.5 N and a common, near 3 N class, which are maximally unstable but also maximally adaptable (28, 178). This latter principle is analogous to the immune system, which is maximally effective if it consists of maximally recombinogenic stem cells. The high risk of lethal nullisomies also explains why the near 1.5 N aneuploidy is rare compared to the near 3 N aneuploidy (Fig. 1). Feature #9. Aneuploidy-generated genomic instability is inevitably dominant, because the aneuploid dosages of thousands of genes dominate gene expressions and phenotypes (22, 179 – 182). Feature #10. According to the aneuploidy theory, the standard phenotypes of Down syndrome are direct consequences of the abnormal gene dosage of the trisomic chromosome 21. By contrast the uncertain developmental phenotypes of Down syndrome, like endocardial defects and polydactyly, would be indirect consequences of trisomy 21. For example, supply-sensitive diploid developmental programs could be rendered error-prone by abnormal dosages of chromosome 21 products. This particular kind of genomic instability has been termed, ‘amplified developmental instability’ by Shapiro (179,209). Indeed, a high risk of ‘nonconcordant’ phenotypes is typical for all aneuploidy syndromes (39,179). Likewise, certain phenotypes of cancer cells may result from diploid genes whose functions are rendered 73 error-prone by abnormal dosages of products from aneuploid genes. Thus aneuploidy is able to generate not only certain phenotypic abnormalities, but also uncertain developmental abnormalities. The higher-than-normal leukemia and cancer risks of Down syndrome are also predicted by the aneuploidy theory based on the modestly enhanced degree of chromosomal instability (Fig. 1). According to the aneuploidy theory the maternal age-bias of Down’s would reflect age-dependent defects of the spindle apparatus of oocytes, which increase the risk of nondisjunction either during meiosis or an early mitosis. Indeed, rare Down syndromes, which are generated by translocations of chromosome #21 to other chromosomes, are not agedependent (6,39). And about 2% of the age-dependent trisomies 21 are mosaics derived from non-disjunction during the first or second mitosis of the fertilized egg (39). Feature #11. The non-selective phenotypes of cancer cells are those which are linked to selective phenotypes on the same aneuploid chromosome (26, 27). They are common in cancers because any chromosome with selective genes also carries a large excess of non-selective genes. Feature #12. The large target, genomic instability, has intrigued many investigators in the past, particularly in view of the prevailing gene mutation hypothesis. For example, Bols et al. deduced in 1992 from the high yields of immortalization of Syrian hamster embryo cells by benzpy-rene, ‘according to the mutation hypothesis immortalization is hardly to be expected. . . . However, immortalization was frequently observed. Therefore the induction of immortalization appears indirect’ (19). Studying the same system, Trott et al. concluded in 1995 that the ‘high frequency change in the treated population’ was ‘an indirect consequence of carcinogen exposure’, ‘rather than . . . direct targeted mutagenesis’ (18). Murnane found in 1996, ‘The high percentage of cells that develop induced genetic instability after exposure . . . to ionizing radiation or alkylating agents . . . and the prolonged period over which the instability occurs, indicates that the instability is not in response to residual damage in the DNA or mutations in specific genes. Instead, changes affecting most of the exposed cells, such as epigenetic alterations in gene expression or chain reactions of chromosome rearrangements, are a more likely explanation’ (32). Hall asked in 1997, ‘At least one aspect of the model [of carcinogenesis] must cause consternation to the radiation biologist, namely how can a single brief exposure to a low dose of radiation result in six or seven mutations at different loci?’ [A reference to the hypothesis that 4 – 7 mutations cause cancer (49, 183, 184)]. Holmberg et al. noted in 1998, ‘The phenotype [genomic instability] is not likely caused by single gene mutation, since it is expressed in a large fraction of surviving cells . . . 10% or more of the surviving cells, a frequency that is at least three orders of magnitude greater than expected for a specific locus mutation. Thus one would have to assume there are hundreds of genes . . . [or] epigenetic 74 DUESBERG ET AL. perturbations . . . or some persistent impression of the genotoxic [mutation] stress response . . .’ (185). Wright wrote in 1999, ‘The instability phenotype is usually induced in a relatively large proportion of the irradiated cell population (generally *10 – 20%). This is orders of magnitude greater than conventional gene mutation’ (86). Little made that same point in a review in 2000, ‘It has been widely assumed that the initial genetic events by radiation in mammalian cells occur as a direct result of DNA damage . . . There is now increasing evidence, however, that exposure of cell populations to ionizing radiation may also produce non-targeted effects; . . . The first was a frequent event which involved a large fraction (20 – 30%) of the irradiated cell population, and enhanced the probability of the occurrence of a second event.’ But, the question of ‘how it is initiated and how it is maintained’ was left open (31). Morgan noted in 2003, ‘This observed frequency of instability is grossly in excess of the frequency reported for gene mutations at similar doses, suggesting that it is unlikely that mutation in a single gene or gene family is responsible for the unstable phenotype in all unstable clones’ (186). All these questions are basically answered by the theory that the target of genomic instability is the chromosome, rather than a gene. The aneuploidy theory predicts that the target, induction of genomic instability, is the loss or gain of a chromosome and thus much larger than the target, gene (Fig. 1). Since humans contain 35,000 different genes (187) on 24 different chromosomes, the average human chromosome is the equivalent of 1458 genes. Thus, in a first approximation the target, genomic instability, is about 1458 times bigger than a human gene (and about 3000 times bigger than a Chinese hamster gene). The higher discrepancies estimated above probably reflect the fact that there are at least two alleles of most genes in diploid cells and even more in aneuploid cells, and thus the likelihood to mutate a corresponding function is only 1/35,000 2 or 4 2. Since the loss of one or more chromosomes is also the cause of cell death (Fig. 1), we have before us an explanation why the targets, induction of genomic instability and lethality, have about the same size. The 12 Features of Genomic Instability According to the Mutation Theory Only 4 of the 12 features of genomic instability can be partially explained by the mutation theory (Table 1). And 3 of these 4 can only be explained via aneuploidy generated by as yet unconfirmed chromosome instability genes (see Mutation theory). In brief: Feature #1, Induction of genomic instability by non-mutagenic carcinogens is un-explained; Feature #3, Phenotypes, which are variable and reversible at high rates, can only be explained via aneuploidy generated by hypothetical chromosome instability genes; Feature # 6, Coincidence of multilateral genomic instabilities with aneuploidy can only be explained as suggested for Feature #3; Feature #9, Dominant phenotypes can only be explained via aneuploidy generated as suggested for Feature #3. Only the Aneuploidy Theory Offers a Coherent Explanation of all Features of Genomic Instability In sum, the aneuploidy theory can offer a coherent explanation for all of 12 features that define genomic instability, listed above and in Table 1. By contrast, the original version of the mutation theory can only explain 1 out of 12 (59), whereas modified versions, which postulate mutator genes that generate aneuploidy (see above and (17, 56, 188)), can explain 3 or more additional features (Table 1). Since aneuploidy is the only theory that provides a coherent explanation for all features analyzed, we conclude that aneuploidy is the primary cause of genomic instability. Aneuploidy Theory Resolves the Paradox that Carcinogens and Hypothetical Cancer Genes Transform Aneuploid Rodent Cell Lines, but not Diploid Cells The convention, to use morphological transformations of aneuploid rodent cell lines as an assay for carcinogens and cancer genes (29, 31, 186, 189), has generated several paradoxes. For example, Parodi and Brambilla have reviewed dozens of studies, which arrived at the conclusion that ‘34 carcinogenic compounds’ are several 1000-times more efficient in transformation of aneuploid rodent cell lines than in mutating any specific gene: ‘The difference in frequency between structural mutations and transformations was about 102–103 and it appears statistically extremely significant. . . . The frequency of morphological transformations is so much higher than the frequency of somatic mutations that it is probably more reasonable to consider the morphological transformation as an event of ‘‘epigenetic’’ type’ (191). Based on morphological transformation of aneuploid mouse cell lines with carcinogens Cairns also arrives at the conclusion, ‘The first step in the sequence seems to be too efficient; in certain situations, even quite low doses of mutagen are capable of initiating the process in almost every exposed cell’ (192). By contrast, the efficiency of carcinogens to transform normal diploid cells to cancer cells in vivo – via a multistep chain reaction of aneuploidizations – is very low and the process is very slow, particularly in humans (see also Cairns (2) and Introduction). Even the popular view that point mutations generate human cancer, as for example mutations of the ras genes, is functionally only based on ‘morphological transformation’ of the highly aneuploid mouse 3T3 cell line (193 – 195). But, as yet, no genes have been isolated from cancer cells that alone or in combination with others are able to transform diploid human or animal cells to cancer cells (31, 49, 138, 172, 196, 197). By contrast, a retroviral ras gene with a retroviral promoter isolated from a virus-transformed cell, transforms diploid cells under the same experimental conditions in which its cellular relatives fail (198). ANEUPLOIDY, THE PRIMARY CAUSE According to the aneuploidy theory the high frequencies at which carcinogens and hypothetical cancer genes cause ‘morphological transformations’ in aneuploid cell lines simply reflect the low thresholds of phenotype alterations of aneuploid cells. In aneuploid cell lines transforming agents would function as exogenous catalysts that accelerate spontaneous, aneuploidy-catalyzed karyotype variations. In such cells carcinogens and hypothetical cancer genes do not have to initiate de novo the lengthy and inefficient steps of immortalization and transformation, because these steps have already been taken by all aneuploid cell lines (see Introduction and Feature #4). Accordingly, all cell lines are immortal and practically all are tumorigenic, even if they appear morphologically untransformed in vitro (190, 199 – 201). Even the specific-gene-mutation standards, to which the transformation frequencies of aneuploid cell lines were compared by Parodi and Brambilla (191), are elevated by aneuploidy-catalyzed gene mutations and thus are also not directly relevant to the natural mutation rates of diploid cells (see Aneuploidy theory and Fig. 1). Instead of being relevant to the causation of cancer in diploid cells, the studies of morphological transformations of aneuploid cell lines are only relevant to either the progression of preneoplastic to neoplastic cells or to the progression of carcinogenesis (7). The Relationship Between the Genomic Instability of Hereditary Syndromes that Predispose to Cancer and the Genomic Instability of Aneuploid Cells The cells of humans with hereditary genomic instability syndromes that predispose to cancer, such as the Bloom’s syndrome, Fanconi’s anemia, hereditary nonpolyposis colorectal cancer, hereditary hyperplastic polyposis and xeroderma pigmentosum carry a higher risk of spontaneous carcinogenesis than normal cells (14, 36, 58, 62, 69, 80). But, in contrast to the cancer-related phenotypes of aneuploid cells (see Feature #9, above), the phenotypes of the hereditary syndromes are recessive. Further, the karyotypes of these syndromes are ‘generally not associated with visible cytogenetic changes’, i.e. are diploid (14, 69). Some of these hereditary syndromes generate hyperplastic phenotypes, as for example diploid hyperplastic polyposis (69). However, the associated cancers can originate either from the hyperplastic or from normal tissues (51, 69). According to the aneuploidy theory the elevated cancer-risk of these syndromes is an elevated risk of spontaneous aneuploidization. Indeed, Hoeijmakers points out that the genetic ‘lesions frequently induce various sorts of chromosomal aberrations, including aneuploidy’ (62). The Bloom’s syndrome is a classical point in case (202). Since the hereditary, genomic instability syndromes increase the low, normal risk of spontaneous aneuploidization, their genetic defects are functionally equivalent to exogenous carcinogens. Thus the cancer-relevant genetic defects of the hereditary 75 instability syndromes are risk factors for spontaneous aneuploidization. Aneuploidy, the Common Cause of Genomic Instability and Cancer Considering that carcinogens and spontaneous errors in chromosome segregation each cause random aneuploidy, and that aneuploidy is inherently unstable and thus able to generate new species with new phenotypes – we have before us the facts to explain the entire multistep sequence of carcinogenesis (Fig. 1). This sequence begins with a random aneuploidy, which is caused either by a carcinogen or arises spontaneously. Since almost any aneuploidy unbalances at least some conserved teams of proteins that segregate, synthesize and repair chromosomes, the karyotypes of aneuploid cells are perpetually at risk of autocatalytic variations. The risk and rates of karyotype variation would be proportional to the degree of aneuploidy. The basis for the somatic evolution of cancer cells from randomly aneuploid precursor cells is selection for advantages in growth. Thus aneuploidy is necessary, but not sufficient for carcinogenesis. Since cancer cells are generated from precursor cells by rearranging old genes into new sets of chromosomes – just like new species are generated in phylogenesis (81) – cancer cells are new species of their own, rather than mutants of any precursor cells. However, due to the inherent instability of aneuploidy, aneuploid cell species are unable to achieve phylogenetic autonomy, since they are too unstable to maintain the many genetic investments that are necessary for autonomy, but as parasites they are able to progress from bad to worse autocatalytically, i.e. from phenotype-less preneoplastic to highly malignant cancer cells. The many idiosyncratic phenotypes of cancer cells, such as immortality, reproductive death, invasiveness, drug-resistance, metastasis, abnormal gene expression, etc. (see Introduction and Feature #4), represent distinct subspecies from within the inherent ‘polyphyletic’ diversity (5) of individual cancers. Since aneuploidy and genomic diversity are incompatible with the identity and survival (203, 204) of an autonomous, diploid species, the idiosyncratic phenotypes of cancer cells are never observed in diploid biology. We conclude that the transition of stable diploid to unstable aneuploid cell species is the primary cause of preneoplastic and neoplastic genomic instability and of cancer. Accordingly the many heterogeneous and non-clonal gene mutations of cancer cells are just inevitable, but probably nonselective consequences of aneuploidy. ACKNOWLEDGMENTS We thank Paul La Rosee (III Med. Klinik, Mannheim of the University of Heidelberg), Rainer Sachs (Dept. Mathematics, UC Berkeley), Rudi Werner (University Miami, Medical School) and Lynn Hlatky (Dana-Farber at Harvard, 76 DUESBERG ET AL. Boston) for critical reviews of and helpful suggestions for the manuscript, and Sachs also for the original design of Fig. 1. 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