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Chapter 5: A Tour of the Cell
AP Biology
http://vimeo.com/37107992
Overview of Cells
AP Biology
elements
p+, no, e-
Cell structure & function
 Cell structure correlates to cell function
AP Biology
Structure-function: red blood cells
need to be able to squeeze through
one-cell wide capillaries…you
would want them to be squishy and
balloon like, not wirey like neurons
or long and spindly like muscle
cells etc…
These are neurons, shaped like
wires to carry electrical information
between cells. They act like wires.
AP Biology
These striped (striated) cells are skeletal
muscle cells (the ones you voluntarily control
to move your bones, etc…). I outlined part of
one in black below. They are multi-nucleated
(each cell has many nuclei) because they
form from the fusion (joining together) of many
individual cells. The stripes are the actin and
myosin proteins, which contract (shorten) the
cells.
nuclei
AP Biology
Brief History of the Microscope
Leeuwenhoek made major
advances in microscopy and was
the first to observe free living
protists and bacteria (both known
as microorganisms of Mos),
which combined he called
animalcules …
Antonie Philips van Leeuwenhoek (1632 – 1723)
AP Biology
http://inventors.about.com/od/mstartinventions/a/microscope.htm
Dutch Scientist, The Father of
Microscopy/Microbiology
Brief History of the Microscope
Robert Hooke (1665)
Communicated with and confirmed
Leeuwenhoek’s findings, improved
on the microscope and coined the
term “cell”.
Drawing of the structure of cork as appeared
in Hooke’s book Micrographia in 1665
AP Biology
Robert Hooke (1635 – 1703)
English Scientist
The “English” Father of Microscopy
How do we describe the strength
of a microscope?
1. Magnification
- Simply how much larger the object appears to be
relative to its actual size.
2. Resolution
- Measure of the clarity of the image
- The distance two points can be separated and still be
distinguished as two points
AP Biology
10 m
Human height
Different Microscopes
 Light Microscope
Length of some
nerve and
muscle cells
0.1 m
1 cm
Frog egg
1 mm
100 µm
 Image is a called a
micrograph
Most plant
and Animal cells
10 µ m
Nucleus
Most bacteria
Mitochondrion
1µm
Smallest bacteria
100 nm
Viruses
10 nm
Ribosomes
Proteins
1 nm
Lipids
Small molecules
AP Biology
http://learn.genetics.utah.edu/content/cells/scale
0.1 nm
Atoms
Electron microscope
Visible light
passing through a
specimen
Light Microscope

Chicken egg
Unaided Eye
1m
Light Microscope
sperm
Ovum
AP Biology
Cells are for the most part colorless like the
sea urchin egg (ovum) and sperm shown
here. If they are colored, they have either
been stained by the scientist or they are
naturally colored like red blood cells by
some type of molecule that gives off
colored light.
Light Microscope
Bamboo Vascular
(transport) Cells
Here you are looking at
cells from a bamboo plant.
These cells have been
stained to make them
more visible.
AP Biology
Light Microscope
Plants cells
The small green structures inside
the rectangular plant cells are their
chloroplasts.
AP Biology
Very important, these cell are
ALIVE!! You can view living cells as
they exist in nature with a light
microscope… (just an aside: if you
stain them they die)
Methods for viewing cellular
structures
TECHNIQUE
Differential-interference-contrast
(Nomarski).
Uses optical modifications to
exaggerate differences in density,
making the image appear almost 3D.
Brightfield (unstained
specimen).
Human cheek epithelial
cell
Brightfield (stained
specimen).
Staining with various dyes
enhances
contrast.
Phase-contrast.
Enhances contrast
in unstained cells by
amplifying
variations in density within
specimen
AP Biology
50 µm
Fluorescence.
Tags specific molecules with dyes
50 µm
Confocal.. A sharp image results, as
seen in stained nervous
tissue (top), where nerve cells are
green, support
cells are red, and regions of overlap
are yellow. A
standard fluorescence micrograph
(bottom) of this
relatively thick tissue is blurry.
Electron Microscopes
 Focus a beam of
Cross
section of
cilium
electrons through a
specimen

TEM – transmission
 Detailed study of
internal structure

SEM- surface
 Detailed study of the
surface of specimen
AP Biology
Cilia
1 µm
Red Blood Cells
Compare the SEM micrograph to
the Light Micrograph in the bottom
right
AP Biology
Viruses
This is a colored SEM micrograph
of a number of viruse particles
(herpes virus – virus that causes
herpes). Each viral particle is
around 50nm which is about 100x
smaller than bacteria.
AP Biology
Bacteria being eaten by a
The bacteria WBC
are in green and the
WBC is tan. Bacteria (prokaryotes)
are around 100X smaller than
eukaryotes.
AP Biology
A mosquito.
AP Biology
TEM showing internal structure of a plant
cell (outlined in blue)…
AP Biology
Yet even higher Magnification of the EUKARYOTIC
CELL
Mitochondri
a
AP Biology
Cell Fractionation
 Takes cells apart and
separates major
organelles from one
another
 The centrifuge

Is used to fractionate
cells into their
component parts
AP Biology
Cell Fractionation
APPLICATION
Cell fractionation is used to isolate
(fractionate) cell components, based on size and density.
Homogenization
Tissue
cells
TECHNIQUE
1000 g
Homogenate
(1000 times the
force of gravity)
Differential centrifugation
10 min
First, cells are homogenized in a blender to
break them up. The resulting mixture (cell homogenate) is then
centrifuged at various speeds and durations to fractionate the cell
components, forming a series of pellets.
Supernatant poured
into next tube
20,000 g
20 min
RESULTS
In the original experiments, the researchers
used microscopy to identify the organelles in each pellet,
establishing a baseline for further experiments. In the next series
of
experiments, researchers used biochemical methods to
determine
the metabolic functions associated with each type of organelle.
Researchers currently use cell fractionation to isolate particular
organelles in order to study further details of their function.
AP Biology
Pellet rich in
nuclei and
cellular debris
80,000 g
60 min
150,000 g
3 hr
Pellet rich in
mitochondria
(and chloroplasts if cells
are from a Pellet rich in
plant)
“microsomes”
(pieces of
plasma membranes and
Pellet rich in
cells’ internal ribosomes
membranes)