Download Navigating Expression Data in FlyBase

Survey
yes no Was this document useful for you?
   Thank you for your participation!

* Your assessment is very important for improving the work of artificial intelligence, which forms the content of this project

page
1
page
2
page
3
page
4
page
5
page
6
page
7
page
8
page
9
page
10
page
11
page
12
page
13
page
14
page
15
page
16
page
17
page
18
page
19
page
20
page
21
page
22
page
23
page
24
page
25
page
26
page
27
page
28
page
29
page
30
page
31
page
32
page
33
page
34
page
35
page
36
page
37
page
38
page
39
page
40
page
41
page
42
page
43
page
44
page
45
page
46
Document related concepts
no text concepts found
Transcript 
Navigating Expression Data in
FlyBase
2011 Drosophila Research
Conference
How To Find Expression Data
When & where is my favorite gene expressed?
Report Pages
GBrowse
BROWSE
What genes are expressed at a given time & tissue?
SEARCH
TermLink
QuickSearch
QueryBuilder
Similarity-Based Comparison
Two Kinds of Expression Data In FlyBase
Old School:
paper by paper, gene by gene
painstaking & qualitative
High Throughput:
data set by data set
expansive & quantitative
Browsing Curated Expression Data
Browsing of Curated Expression Data
Browsing of Curated Expression Data
Location of External Expression Data
Location of External Expression Data
Reporter Expression Data
Reporter Expression Data
Curated Expression Data
Reporter Expression Data
Browse High-Throughput Expression Data:
Gene Reports
Browse High-Throughput Expression Data:
Gene Reports
Browse High-Throughput Expression Data:
Gene Reports
Browse High-Throughput Expression Data:
Gene Reports
Browse High-Throughput Expression Data:
Gene Reports
GBrowse: MicroArray Expression Data
GBrowse: RNA-Seq Coverage Data
GBrowse: RNA-Seq Coverage Data
GBrowse: Other High-Throughput Data Tracks
GBrowse: Exon Junctions
Searching Expression Data
Literature-curated
TermLink
High-throughput
Similaritybased
QuickSearch
Granularity
QueryBuilder
TermLink: A single parameter
Searching Curated Data: Term Link
Searching Curated Data: Term Link
Searching Curated Data: Term Link
CV Term Reports: Identifying related records
Searching Curated Data: Term Link
Searching Curated Data: Quick Search
Searching Curated Data: Quick Search
Searching Curated Data: Quick Search
Searching Curated Data: Query Builder
Searching Curated Data: Query Builder
Searching Curated Data: Query Builder
Searching Curated Data: Query Builder
Searching Curated Data: Query Builder
Searching High-Throughput Data: QuickSearch
Searching High-Throughput Data: QuickSearch
Searching High-Throughput Data: QuickSearch
Searching High-Throughput Data: HitList
Refinement
Searching High-Throughput Data: HitList
Refinement
Searching High-Throughput Data: HitList
Refinement
Searching High-Throughput Data: HitList
Refinement
Similarity-based searches
Similarity-based searches
• Based upon temporal expression pattern
• Correlation of increases and decreases in
expression levels
• Absolute expression level not important
• GO terms matching those for the input
gene are highlighted.
Summary
• There are different ways to search expression data depending upon:
• the type of data
• the type of search you want to do
• Literature curated data and high throughput data must be searched
separately.
• Literature curated data and high throughput data can both be
browsed on the gene report.
• Use the gene expression report to view ALL the curated data for a
particular gene.
Related documents